3300014939: Human fecal microbial communities from obese patients in Germany - AS66_6

Overview

Basic Information

• IMG/M Taxon OID: 3300014939
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0121297 | Gp0151630 | Ga0134458
• Sample Name: Human fecal microbial communities from obese patients in Germany - AS66_6
• Sequencing Status: Permanent Draft
• Sequencing Center: University of Hohenheim
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 68274437
• Sequencing Scaffolds: 6
• Novel Protein Genes: 6
• Associated Families: 5

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	2
Not Available	2

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Fecal Microbial Communities From Obese Patients In Germany
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human Fecal → Human Fecal Microbial Communities From Obese Patients In Germany

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal distal gut

Location Information

• Location: Germany
• Coordinates
  • Lat. (^o): N/A
  • Long. (^o): N/A
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F042936	Metagenome	157	N
F044554	Metagenome	154	N
F052660	Metagenome	142	N
F076190	Metagenome	118	Y
F089053	Metagenome	109	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0134458_101535	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	4968
Ga0134458_102401	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae	3461
Ga0134458_105579	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	1704
Ga0134458_113108	Not Available	882
Ga0134458_119428	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	661
Ga0134458_120908	Not Available	626

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0134458_101535	Ga0134458_1015354	F089053	MEGPRPDKFAFGVKLERVVDECRPIKGCIRKWLYVFANGQQELSAAEEANVKNMEAFL*
Ga0134458_102401	Ga0134458_1024011	F042936	MGRGEGKGRVWKTKEGIMKTSGIVDRGEDTIRHFEKVEQEGALTPPYLGKVYFRSRLRGK
Ga0134458_105579	Ga0134458_1055791	F052660	MCILRVLPENTPEKIGQERAGTEWTVVKSKIRLCIRNRSYGQLLHGGILMGIALPIPSYRAKSHDFAHWWPAAAGHSRSADALPGKSNS*
Ga0134458_113108	Ga0134458_1131081	F044554	VLAGRFIPVLCASIARLFPCRTEIARCLTLDFAISRYLLLSFPFSFRTNFAQALFSSLLFVSDTCAKSILFLLFENEIAHLQ
Ga0134458_119428	Ga0134458_1194281	F076190	SWARTAGGSITISVKNVFTAASRVSGRVWSLVRITIPNGLKYVKIRGRKTQNNSLYSYFQREPL*
Ga0134458_120908	Ga0134458_1209081	F076190	VKNVFTAASRVSGRVWSLVRITVPNGLKSVRIRGRKTQNNSLYPYFQKEPL*