3300014935: Human fecal microbial communities from infant at 12 months in Denmark - 598_12M

Overview

Basic Information

• IMG/M Taxon OID: 3300014935
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0127429 | Gp0193812 | Ga0169825
• Sample Name: Human fecal microbial communities from infant at 12 months in Denmark - 598_12M
• Sequencing Status: Permanent Draft
• Sequencing Center: Beijing Genomics Institute (BGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 91346478
• Sequencing Scaffolds: 5
• Novel Protein Genes: 5
• Associated Families: 5

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Tannerellaceae → Parabacteroides	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	2
All Organisms → cellular organisms → Bacteria	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Host-Associated Microbial Communities From Fecal Samples Of Mother And Infant In Denmark
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human Host-Associated → Human Host-Associated Microbial Communities From Fecal Samples Of Mother And Infant In Denmark

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal distal gut

Location Information

• Location: Denmark
• Coordinates
  • Lat. (^o): 55.678
  • Long. (^o): 12.531
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F051936	Metagenome	143	N
F052660	Metagenome	142	N
F062845	Metagenome	130	N
F070093	Metagenome	123	N
F078693	Metagenome	116	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0169825_100075	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Tannerellaceae → Parabacteroides	138638
Ga0169825_100723	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	16911
Ga0169825_101957	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	5242
Ga0169825_113651	All Organisms → cellular organisms → Bacteria	883
Ga0169825_119198	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	642

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0169825_100075	Ga0169825_10007522	F051936	MKQEGTGQVLFFPLALRGKAFGFSVLQEHAVMAPVISIFSAMLIIKHLSIHISIKK*
Ga0169825_100723	Ga0169825_1007239	F052660	MCILRVLPEKTSERIGQERAGTEWTVVKSKIRLCIRNRSYGRFLHGGILMGIALPIPAHRAKSHDFACWWPAAADHSRSADALPGKSNF*
Ga0169825_101957	Ga0169825_1019574	F062845	MKKTPFILHEKFRSDNNEQRKEWFQKEFERYIIDGLLNAVPSSSCA*
Ga0169825_113651	Ga0169825_1136512	F070093	PFRIDPPMEPEQEHLSKLYSGSGIHSLPELNPKSI*
Ga0169825_119198	Ga0169825_1191982	F078693	MVVAPVRGAERFFIKADCSLLMSKENQKTTSDFDALDPRERGCSPLSDPKGVVETEKS*