3300014815: Human oral microbial communities from Los Angeles, CA, USA - S21-03-R

Overview

Basic Information

• IMG/M Taxon OID: 3300014815
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0113963 | Gp0134645 | Ga0119815
• Sample Name: Human oral microbial communities from Los Angeles, CA, USA - S21-03-R
• Sequencing Status: Permanent Draft
• Sequencing Center: University of California, Los Angeles
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 231058693
• Sequencing Scaffolds: 9
• Novel Protein Genes: 9
• Associated Families: 8

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → unclassified Porphyromonas → Porphyromonas sp. oral taxon 279	2
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	1
All Organisms → cellular organisms → Bacteria	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1
All Organisms → Viruses → Predicted Viral	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → unclassified Eubacteriales → Clostridiales bacterium	2
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Oral Microbial Communities From Los Angeles, Ca, Usa
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Oral Cavity → Subgingival Plaque → Human Oral → Human Oral Microbial Communities From Los Angeles, Ca, Usa

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal secretion

Location Information

• Location: USA: Los Angeles
• Coordinates
  • Lat. (^o): 34.0722
  • Long. (^o): -118.4441
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F046431	Metagenome	151	Y
F054109	Metagenome	140	N
F061926	Metagenome	131	N
F092230	Metagenome	107	N
F092232	Metagenome	107	N
F094006	Metagenome	106	Y
F095632	Metagenome	105	N
F098763	Metagenome	103	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0119815_1000665	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → unclassified Porphyromonas → Porphyromonas sp. oral taxon 279	28370
Ga0119815_1000675	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	28148
Ga0119815_1000834	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → unclassified Porphyromonas → Porphyromonas sp. oral taxon 279	24507
Ga0119815_1001353	All Organisms → cellular organisms → Bacteria	17276
Ga0119815_1003909	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	7256
Ga0119815_1012608	All Organisms → Viruses → Predicted Viral	2741
Ga0119815_1016841	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → unclassified Eubacteriales → Clostridiales bacterium	2167
Ga0119815_1019855	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → unclassified Eubacteriales → Clostridiales bacterium	1885
Ga0119815_1054284	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium	789

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0119815_1000665	Ga0119815_10006658	F094006	MWSALEPAGPTGALYESTVCVEAHIGELQTGGIACRGLFAFEGSNVLAVAELGAEAPHAIDMYDIALCKPLSELFAKELEYAFNFGA*
Ga0119815_1000675	Ga0119815_100067538	F095632	MSFKESTGYKVVNFVASTTASITAGAVVSALCPPAGVALTVVYSLGSGVLGSYVGDKAGQQYAENFAETIDSIKTDSNN*
Ga0119815_1000834	Ga0119815_100083412	F098763	MDRRASIRILSPALYLATKLFEAVVRTTISYDSSDEVEGKGGMNAIPTTVDE*
Ga0119815_1001353	Ga0119815_100135317	F092230	MVDKLQTHLLKAFLPLFIVCIIFVAFFRQIDCGGEGGYAFQISEWGAKLKNIYGTDFINKEIIVRDNTVQVDGIRCLYAVNRNEDGLSIYLLLSGGEYLTHNYVGSSFVKFSHSSEYSNMAYGEGSVEVSDSTSTGEVQNTEEKEALNKVDEAINNMRHLFASAIMVNLRVVELYKILTGCMILIAIVVIAGYYSYLKPETVYELYCKLRRKEKYSSDVNLVKRIGFLTIILPPCMLFLLIL*
Ga0119815_1003909	Ga0119815_10039095	F054109	MVGRPKTERGMKVHTAFKIYPDDKARAQAMADKLEMTLSAYINKAVLEKVARDEKSED*
Ga0119815_1012608	Ga0119815_10126082	F092232	MINQAKFIADYNERNRPKFNDKFFQKSDDDIIEDLKDVILSCQRDKFYTIRVEKFEVIDDYAEIQRLLTGEETPTISIKDSDLKILKVTYYTAIGNQEDTFDVLIAVPRVIDGAYIHLNGNDYFPLFQLVDGSTYNNTSSASAKTQSITLKTNSNAVKMLRNFFEFKLSDGETFKKLASFSVYLFDHKVTLFEYYLARFGWYRTISEFKFDHVIKVTEEDPQDDEYDTFVVQNSHMKTPIYISAVRSVLDADRILQSFVAFIISINKYATKKFTLDNIYNTDFWICKLGFNFVSSETSVFTKGNAIIESLENSYDIPTQKRLRLPDEIKSNIYSVLKWMASEFSYIRLKDNLDASSKRIRWSEYIAAMYIMIINLKLRRLPEKPDPNVEVLRIKQQLNTPPMALIAELQKSNLKGFRNMVNDRDSFLQLKYTIKGPSGPGEGNGKKVAQNIRAVDISQLGIIDVNTSSASDPGVGGMLCPLNDKVFEYNSFTNEPEPNTWDANFDELLKIYRDQKGYTSAIALAEDAGLELTDDRNPESVAFDTEYLGNLIGKIAPTKAFETQLRPAFINMEDSGSIIFED*
Ga0119815_1016841	Ga0119815_10168411	F046431	SELTLTPKPETNNIHLKWTGPQNSSYKVYQKKPGSSTFETIGLTDFSNNATDEEVKVLNIYPTPDYNNTQLSSSYPMPNITVTYLDGQTETIPKSAILKAWMEGRNSYRRINCDKL*
Ga0119815_1019855	Ga0119815_10198554	F046431	MKIFKKMTIVSILLIIMLTYTQTLVFAAESELTLTPKPETNNIHLKWTGPQNSSYKVFQKKPGATQFETIGLTDFSNTDEEVRVLNVYPVSIAEYNTPYVNVTYLDGTSEDIPKSALLKVWMEGRNSK*
Ga0119815_1054284	Ga0119815_10542841	F061926	ASMLLIIFVMNVSGLFVRLHHQETHQKTEKIAECSDKVCYHKAHLQTKNDCDCGFLCTLNYFYILPEKPLTEIRVNEYFSYFSSYKIFVSERIILLWQSRAPPVLS*