3300014767: Human fecal microbial communities from ulcerative colitis therapy, University of Washington - UWIBD01P788T1

Overview

Basic Information

• IMG/M Taxon OID: 3300014767
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0121299 | Gp0151678 | Ga0134506
• Sample Name: Human fecal microbial communities from ulcerative colitis therapy, University of Washington - UWIBD01P788T1
• Sequencing Status: Permanent Draft
• Sequencing Center: University of Washington
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 90480455
• Sequencing Scaffolds: 5
• Novel Protein Genes: 5
• Associated Families: 5

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Fecal Microbial Commmunities From Fecal Microbiota Transplantation (Fmt) For Ulcerative Colitis - University Of Washington
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human Fecal → Human Fecal Microbial Commmunities From Fecal Microbiota Transplantation (Fmt) For Ulcerative Colitis - University Of Washington

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal distal gut

Location Information

• Location: USA: University of Washington
• Coordinates
  • Lat. (^o): N/A
  • Long. (^o): N/A
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F051936	Metagenome	143	N
F062845	Metagenome	130	N
F068811	Metagenome	124	N
F076189	Metagenome	118	N
F076190	Metagenome	118	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0134506_100452	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales	16736
Ga0134506_106702	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium	2077
Ga0134506_123502	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	739
Ga0134506_125189	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	697
Ga0134506_127693	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	642

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0134506_100452	Ga0134506_10045218	F051936	VLFFPLALRGKAFGFSVLQEHAVMTPVISIFFSVLIITYLSIHISIKK*
Ga0134506_106702	Ga0134506_1067022	F062845	MKKTPFILHEKFRSDNNEQRKEDFQKEFERYIIDGLLNAVPSRVCT*
Ga0134506_123502	Ga0134506_1235022	F076189	MPGRLCYLPGIAFFLSPFIKPLLYVEKLQIGTVLPVVSDLYREFAELAAYFDLYAIQSAQKQLRMLCNFHENTFGLLIFYANYAIL*
Ga0134506_125189	Ga0134506_1251892	F068811	MDQDGSEHNICSNREGLRPGKKQHGASGWKQIFQHGKEPLRNKDSVSQYCNKKVAVSLILNENVSETLCIFSIDKTNGCRI*
Ga0134506_127693	Ga0134506_1276931	F076190	FTAASRVSGRVWSLVRITVPNGLKSVRIWVEKTQNNSLYPYFQREPL*