3300014554: Human oral microbial communities of schizophrenia patients from Maryland, USA - ES_106

Overview

Basic Information

• IMG/M Taxon OID: 3300014554
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0121296 | Gp0151517 | Ga0134345
• Sample Name: Human oral microbial communities of schizophrenia patients from Maryland, USA - ES_106
• Sequencing Status: Permanent Draft
• Sequencing Center: The George Washington University (GWU)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 106703379
• Sequencing Scaffolds: 14
• Novel Protein Genes: 14
• Associated Families: 14

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria → Candidatus Saccharimonas → Candidatus Saccharimonas aalborgensis	1
Not Available	3
All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → unclassified Porphyromonas → Porphyromonas sp. oral taxon 279	4
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Prevotellaceae → Alloprevotella → Alloprevotella sp. oral taxon 473	2
All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Neisseriales → Neisseriaceae → Neisseria → Neisseria flavescens	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas	1
All Organisms → cellular organisms → Bacteria	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Oral Microbial Communities Of Schizophrenia Patients From Maryland, Usa
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Oral Cavity → Throat → Human Oral → Human Oral Microbial Communities Of Schizophrenia Patients From Maryland, Usa

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal secretion

Location Information

• Location: USA: Maryland
• Coordinates
  • Lat. (^o): N/A
  • Long. (^o): N/A
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F040149	Metagenome	162	N
F043235	Metagenome	156	N
F046432	Metagenome	151	Y
F046433	Metagenome	151	N
F047508	Metagenome	149	N
F051213	Metagenome	144	N
F053092	Metagenome	141	N
F054109	Metagenome	140	N
F072446	Metagenome	121	N
F077404	Metagenome	117	N
F090517	Metagenome	108	N
F098763	Metagenome	103	N
F103431	Metagenome	101	N
F103432	Metagenome	101	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0134345_100065	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria → Candidatus Saccharimonas → Candidatus Saccharimonas aalborgensis	44890
Ga0134345_100409	Not Available	16844
Ga0134345_100479	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria	15651
Ga0134345_101034	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → unclassified Porphyromonas → Porphyromonas sp. oral taxon 279	9893
Ga0134345_101604	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Prevotellaceae → Alloprevotella → Alloprevotella sp. oral taxon 473	7540
Ga0134345_103233	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Neisseriales → Neisseriaceae → Neisseria → Neisseria flavescens	4773
Ga0134345_103305	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → unclassified Porphyromonas → Porphyromonas sp. oral taxon 279	4695
Ga0134345_103551	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → unclassified Porphyromonas → Porphyromonas sp. oral taxon 279	4449
Ga0134345_106226	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Prevotellaceae → Alloprevotella → Alloprevotella sp. oral taxon 473	2945
Ga0134345_108665	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → unclassified Porphyromonas → Porphyromonas sp. oral taxon 279	2284
Ga0134345_112477	Not Available	1725
Ga0134345_113132	Not Available	1657
Ga0134345_124630	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas	956
Ga0134345_133435	All Organisms → cellular organisms → Bacteria	713

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0134345_100065	Ga0134345_10006517	F046433	MIELPTSPDALSELSPVAPPKLLLQAQDASRDNLMVYVKADDYLRTETSDPSFMKSRCETTEYKALNEFLYFMKMVEPYVPDHIKDDARELRNELVFLGMSELHFAATALAKRLRHLLKVDNNPVYVDVGNSLSQCRVKKEMKSSQYILSLVLSKFLDDEFEEYEGRLKVYGGRGEIDKSSKILFLDDWIINGSQIEERIAGFEVDNDPEDHEASVLVMAASSNYIDNGIGVDSLWGEATYPVEAYYRLKNDHNDWGVSRVTGIHSSTDSAFGYEVDDIAYRAIEGGILKGERIDRLTLPALVNIVRPYRNGEDFDGLSRFRQLLEKG*
Ga0134345_100409	Ga0134345_1004096	F054109	MFKEETYMTGRPKSKKGVKVHTAFKIYPKDKERAQVMADNLDMSLSAYINKAVLEKLEHDEKSEA*
Ga0134345_100479	Ga0134345_1004797	F046432	MQMTENELSEVITKFQMPEGRYSIEQEGSFGRGEFFWIIKNQSTNQKYLLMNTYSHHGVESELECYREEGFDNLEAIPRKIETLEIPSDAEDEISKYLFGFYSIFEIKS*
Ga0134345_101034	Ga0134345_1010341	F090517	MNRRIFSFCGLLLGLLFLASSCKKDTPLPPQLSEGELRQTAWYGTLEYKNPKRDNYSVYLNFLSDSEVEVIADDWIDPTDSQVRYYYTITDGIFTLKAQVNRELHPQMDQDTWYLIRKEPSLLVFQANAGNPDREATLTLRKQL*
Ga0134345_101604	Ga0134345_1016041	F077404	MTCSRSRNPPNTDGSTDHYAPQAGPALSRKKPTQIGNTKNPFAMNTLKTIFTFFFTLCFMMVANGYAQKTDSINTEAGKSVLHRNAIYIPPALEQYADTTLLHQRFNVENKGNYLYTPFTEDNEPTIPFNYGFLHPLGERFYNCFMGKVDRILRPKADKGFIILTSYLVVLGDSYAFDTSNKDTSKLADLKYLDFRHIKRDFSYGHPYQGFTPNDRIELSNFVQSYGRQAALETANAWVMASYPFSLQSTKFENRYTRGRKLILTDGHSTPYLYFLMIDSVA
Ga0134345_103233	Ga0134345_1032332	F103431	MINLDALVVGMLFFIQLFLQGIAWRVAIAHFFHAERGNAAAAAFDGAFGEDIADCHAKDDNDKNAESEEEGFHVCIPEG*
Ga0134345_103305	Ga0134345_1033054	F043235	MDEVIPSDEGHLLIDLCDDDPRSLCGGLGIVTRYPEGAIALFIGLAHRDQCDIDRIDTIPKEVWEFMEVTREIVDTLIQVSGAAILVKEVKDGMYMPHHLWAEVPRLGKVQHVEGFHVREALAIIVEGFGEAAGGCHSMAKDQEVPALYCRSHGFESGRSMASNVLLPGSAH*
Ga0134345_103551	Ga0134345_1035512	F098763	MNGRASLRVLSTALHLATKLFEAVVWATIADNSSNEVEGKGGMNAIPTAVDE*
Ga0134345_106226	Ga0134345_1062262	F072446	MHEFDAQAQKNKFNPPTHPQMKKLVFLLFGLCLYCFTACDNDHEPTKPVRPFHGDTLAQIAWNFPYIVEHHYHSIPGIVPEGTTYRVPVIPRSVEDRTKKEYNEQDVDKVAHLVFRATVHGDTLNRHKKELETLARQLHALTLPTIGTSPVLCGVKSIKAVGVAENGRTYDLRREMKLRIRDYKSRRKYNSGRIVTLDCEDTESMTARYVVVLGEIREAELAEHIQPELKFYLPVKRCMDFSSIRFDITLFNGEVLSFQHKLPSKSVLQELPNKSVLENYKQYGFIPESTYFTTLWPVPEKEIER*
Ga0134345_108665	Ga0134345_1086653	F053092	MQSDQGLILCLTHALLVLGALILEPAEMEDTMDDHTVQLFGILIAKELGIATHRIKADEHVPRDHIPLTLVEGDDIGIVVMIEKVLIGLQDALITTELVAELADTTVIASSDLTDPVAEDTLSEARLLDIFVSIVSYKLRFFRHK*
Ga0134345_112477	Ga0134345_1124772	F047508	SPLGTDIVVARTVEAIATDAVLVVEFVGEPVHIGMLGHRLVEGRIKYPYLRRIGEYLRHSFDTEDVGWVVKRSELCALMEHIYYLWGDTYALSKALCTVYEAVTNGINLIEGLYEVLFFENVEDNLYATRVVRNVKVALNLLSFGVTEGDEGVVDPYALFVPRGQDLVVGELDEGELQRGAATVEDQDFHKVLYYMVRCELILSSP*
Ga0134345_113132	Ga0134345_1131322	F103432	MKLIHSLFSLSLLLALSGLFCTTACQDDAEPTQRAGLISTDSLIHAAQEVYDGKAFEHVVSTTAAGLRVSEPRRVVPMLPRQLHVEMEGKTIFRRHNLPSVSAYSFQVLAVGDTIYRQKESDAQFNADLDALFHQSIGIAPRLFGVKELSVLGIDSRGKTRDLGNYSCPLLQGKIKNVNYRTREGVFHEHYEAARVDTFSVKDDWLLKTKAEPSLYVPSFRLLVWDQPADDCTKLRFTLTLVDGRSLVAEVPLR*
Ga0134345_124630	Ga0134345_1246301	F051213	MKASKLLWAVVIAFTFVFTSCDRVGDEPTIEGKLDKFFDSQAQRKSFRILTGSGKPYNQKVDWHIIGITAPYSDTYLTKKVDTLSNGDLKISYDWVSFTVRENKSVIDVEVQKNETGKVRAVYLNTSTSGRQITLPDMRVTQRAE*
Ga0134345_133435	Ga0134345_1334352	F040149	PVLFVEVEAWYDGRVSSSEILRSVGIAFEREPRLAPVWSHDSKDAIHDFIYDTSVPKGHTLTAVRERETVVAQLLNIHRYVYYP*