3300014148: Groundwater microbial communities from the Aspo Hard Rock Laboratory (HRL) deep subsurface site, Sweden - OS_PW_MetaG

Overview

Basic Information

• IMG/M Taxon OID: 3300014148
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0127568 | Gp0198139 | Ga0180010
• Sample Name: Groundwater microbial communities from the Aspo Hard Rock Laboratory (HRL) deep subsurface site, Sweden - OS_PW_MetaG
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 97053588
• Sequencing Scaffolds: 9
• Novel Protein Genes: 9
• Associated Families: 8

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	9

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Groundwater Microbial Communities From Three Deep Subsurface Sites In Europe
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Freshwater → Groundwater → Unclassified → Groundwater → Groundwater Microbial Communities From Three Deep Subsurface Sites In Europe

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): freshwater biome → planetary subsurface zone → groundwater
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Subsurface (non-saline)

Location Information

• Location: Sweden: Oskarshamn
• Coordinates
  • Lat. (^o): 57.4344
  • Long. (^o): 16.66
  • Alt. (m): N/A
  • Depth (m): 448

Associated Families

Family	Category	Number of Sequences	3D Structure?
F039402	Metagenome / Metatranscriptome	164	Y
F061521	Metagenome / Metatranscriptome	131	Y
F061881	Metagenome / Metatranscriptome	131	Y
F065402	Metagenome	127	Y
F067408	Metagenome	125	Y
F075675	Metagenome	118	Y
F083668	Metagenome / Metatranscriptome	112	Y
F100338	Metagenome / Metatranscriptome	102	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0180010_1006419	Not Available	1050
Ga0180010_1011235	Not Available	822
Ga0180010_1012038	Not Available	795
Ga0180010_1012582	Not Available	780
Ga0180010_1016565	Not Available	689
Ga0180010_1017891	Not Available	665
Ga0180010_1029481	Not Available	526
Ga0180010_1030809	Not Available	516
Ga0180010_1032254	Not Available	505

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0180010_1006419	Ga0180010_10064191	F100338	ERRVVMDKSLRYRVNVSTSVKGIKTWDCTVDGEGYTMEEVLERSDILVNELEIRYPVKTE
Ga0180010_1011235	Ga0180010_10112351	F067408	MLVKVNVPLVTMDGQVMKDNIDGQAVDATVRMAIVNAVLAPVQKESGIEKVTKYELAKQIFTNDEVDLNEDEIKLIKGCVGENFAPIVVGQIFELLKV*
Ga0180010_1012038	Ga0180010_10120381	F083668	MKWSPDKITALVLIAGCFVLLFTGIDGEVKSILTLAAGYFFGTAIAERRKR*
Ga0180010_1012582	Ga0180010_10125821	F075675	MAKITIIPVYCWHCEKRFYIEIANVYAGKLFCSDKCRIDNLKNEMKIEKMRREVITNDL*
Ga0180010_1016565	Ga0180010_10165652	F075675	MAKVTVIPIYCWHCGKRFYIEIADVYAGKLLCSDKCRIDNLKNEIEIEKMREEAKSQWTNNRPN*
Ga0180010_1017891	Ga0180010_10178913	F065402	MLKVVIGFETSKEFKERVIEAGKNYKIDGVANPVNLSMFCRIAVAKLLNEIENKEMKL*
Ga0180010_1029481	Ga0180010_10294811	F061881	MSLSRDSRQERKLKALRRAQFRLKQRFEVIDFEEDVLLPEIEALKSGKSVLGLLEGAAFDIQVVDEGMTN*
Ga0180010_1030809	Ga0180010_10308091	F061521	MQEAQIRIEIERIVNLVAGFGWTKVEEKTSAGEVLLTLRKVVPVTKE*
Ga0180010_1032254	Ga0180010_10322541	F039402	MPLTDYSSLEKEIKEAPEPKTLPRGSEVKARIISVREGISDKNNAQWYQPVFDILNEPLAMEFNDFFWDLADRDKLDEKSAARSLRKFKMFASAFDIDYSRPFSWEDDLLGKTGWVILGVKKSEEYGDQNTVQKYILKK*