3300014140: Human oral microbial communities of schizophrenia patients from Maryland, USA - ES_104

Overview

Basic Information

• IMG/M Taxon OID: 3300014140
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0121296 | Gp0151516 | Ga0134344
• Sample Name: Human oral microbial communities of schizophrenia patients from Maryland, USA - ES_104
• Sequencing Status: Permanent Draft
• Sequencing Center: The George Washington University (GWU)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 97297032
• Sequencing Scaffolds: 11
• Novel Protein Genes: 12
• Associated Families: 12

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → unclassified Porphyromonas → Porphyromonas sp. oral taxon 279	5
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pasteurellales → Pasteurellaceae → Haemophilus → Haemophilus parainfluenzae	1
Not Available	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium	2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Lactobacillales → Streptococcaceae → Streptococcus	1
All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Oral Microbial Communities Of Schizophrenia Patients From Maryland, Usa
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Oral Cavity → Throat → Human Oral → Human Oral Microbial Communities Of Schizophrenia Patients From Maryland, Usa

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal secretion

Location Information

• Location: USA: Maryland
• Coordinates
  • Lat. (^o): N/A
  • Long. (^o): N/A
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F041827	Metagenome	159	Y
F043235	Metagenome	156	N
F045567	Metagenome	152	N
F047508	Metagenome	149	N
F053092	Metagenome	141	N
F061927	Metagenome	131	N
F064818	Metagenome	128	N
F077405	Metagenome	117	N
F084362	Metagenome	112	N
F089055	Metagenome	109	Y
F097527	Metagenome	104	N
F098763	Metagenome	103	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0134344_1000061	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → unclassified Porphyromonas → Porphyromonas sp. oral taxon 279	30534
Ga0134344_1000065	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → unclassified Porphyromonas → Porphyromonas sp. oral taxon 279	29798
Ga0134344_1000111	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → unclassified Porphyromonas → Porphyromonas sp. oral taxon 279	24545
Ga0134344_1000751	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → unclassified Porphyromonas → Porphyromonas sp. oral taxon 279	8690
Ga0134344_1002070	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → unclassified Porphyromonas → Porphyromonas sp. oral taxon 279	4826
Ga0134344_1003466	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pasteurellales → Pasteurellaceae → Haemophilus → Haemophilus parainfluenzae	3567
Ga0134344_1012784	Not Available	1499
Ga0134344_1013965	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium	1396
Ga0134344_1014741	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Lactobacillales → Streptococcaceae → Streptococcus	1340
Ga0134344_1021606	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium	987
Ga0134344_1026064	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria	849

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0134344_1000061	Ga0134344_100006120	F098763	MDRRASLRILSPALYLATKLFEAVVRTTISYDPSDEVEGKGGMNAISTAVDE*
Ga0134344_1000065	Ga0134344_100006510	F053092	MQSDQGLILCLTHTLLVLGALILEPAEMEDPMDDHTVQLFGILIAKELGIATHRIKADEHIPRDHIPLTLVEGDDIGIVVMIEKVLIGLQDALITTELVAELADTTVIASSDLTDPVAKDTLSEARLLDVFVSIVSYKLRFFRHK*
Ga0134344_1000111	Ga0134344_100011114	F043235	MDEVVPSDEGHLLIDLCDDDPRSLCSGLGIVTRYPEGAIALFIGLTHRDQCDIDRIDTIPKEVWEFMEVTREIVDTLIQVSGAAILVKEVKDGMYMPHHLWAEVPRLGKVQHVEGFHVREALAIIVEGFGEAAGGCHSMAKDQEVPALYCRSHGFEGGRSMASNVLLPGSAH*
Ga0134344_1000751	Ga0134344_10007513	F047508	MLGHRLVEGRVKYPYLRNLGEYLRHGFDTEDVGWVVKRSELCALMEHIYYLWGDTYALCKALCTVYEAVTDGVDLIEGLHEVLFFENVEDNLYAACVVRDVKVALDLLSFGVTEGDEGVVDPYALFVPRGQDLVVGELDEGELQGGAATVEDQDFHKVLYYMVRCELILSSP*
Ga0134344_1002070	Ga0134344_10020705	F045567	MRQRDGRDTLTEELEGGITPLLYRAKGEARRPWVRMVTEDVVHTSTHRVEDALLPVDGDILTPRDGTHIVQAERVVVVLVSQEDSIDTIDTETCGLVVEVRATVDEDTLPTLGDDEGRGAQTTVTSIRAMAHRAATAYLGDTCAGARTEKNYLHVSRRESYHGKEIPSLSSERGCVVERVVR*
Ga0134344_1003466	Ga0134344_10034662	F077405	LLVAKQRGVFYGFILLCQIKFVKKVFNWLKIIQK*
Ga0134344_1012784	Ga0134344_10127842	F084362	DENNKPHAKTYATEADAKRAKKWLLEHGVRSVDIAVKINNKPAGSLKDDKQSETKAEQKGFWWEK*
Ga0134344_1013965	Ga0134344_10139651	F041827	LSALALGCLLLSCNRDLENNENNETPAPPKEERLVLAKLFEYISNVRFQYKNGNEINRMTINEASIDFEYDTYGRIVKERRFDHKSDYGETIITYQYDNQSRLTSSHAISTQYYPDTGYTPRCSVEKKHTYTYQGNKVTVKIEMGTDTCSAIPETGKEKTITLFVENGKVVKSLDENNQIIETIEYLNTKNTLRNMKGFPPLVVEFYIRPLTYELPFYNDIEHIEDLRFIDNIKTRDFHNGSYWEYRYSYNKKKTYDNDYLEREKITVYEKSHNDPTHDNYLFSVSPSRYYIKEK*
Ga0134344_1014741	Ga0134344_10147411	F097527	MIYFKMEKIGNSTKTEKKKKTRPENLVFITIPAAGVEPARPCGHW
Ga0134344_1021606	Ga0134344_10216061	F064818	KKLIAFIADNSSELHPKVFKNKIRFGINKSSYTEMRFDYSQNYKGFYLQLASYNREVGDFFEQEMGNAFLKMLEDESKEFRNLFFAQNSFQLSHYYYGFPIMTNDNTGHLYPEMGTTIFNDVLRNLQANHFKFIQAAEVLSPDLLHYIKRFPSCFFNTALVALLTIEKNLLSLDDERVQGLFEYDNMVTKNECKLFSPFDLIFGKKDYQQTAKQRILQRK*
Ga0134344_1026064	Ga0134344_10260642	F089055	LKVEKMNSTPECVTKTPEIEARKKEARKELAAIFPDAKRYDDNSGVKPKLGEAAVDGKDIKNIIKVNSADNGAVDFCNQALGSYEKSLDHINNGPLETVQTIGISLQRLREYKTERSCR*
Ga0134344_1034218	Ga0134344_10342181	F061927	MKNPIFILSAMLILGACSSESAKKAYNDSFRKTFIEEGVKSCIENSGLKESEAREYCECAMNKINENLSND