3300014137: Human oral microbial communities of schizophrenia patients from Maryland, USA - ES_208

Overview

Basic Information

• IMG/M Taxon OID: 3300014137
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0121296 | Gp0151522 | Ga0134350
• Sample Name: Human oral microbial communities of schizophrenia patients from Maryland, USA - ES_208
• Sequencing Status: Permanent Draft
• Sequencing Center: The George Washington University (GWU)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 92481928
• Sequencing Scaffolds: 18
• Novel Protein Genes: 28
• Associated Families: 28

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria	2
All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria → Candidatus Saccharimonas → Candidatus Saccharimonas aalborgensis	1
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Myoviridae sp. ctYA416	3
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → unclassified Porphyromonas → Porphyromonas sp. oral taxon 279	5
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Prevotellaceae → Alloprevotella → Alloprevotella sp. oral taxon 473	1
All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria	1
Not Available	5

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Oral Microbial Communities Of Schizophrenia Patients From Maryland, Usa
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Oral Cavity → Throat → Human Oral → Human Oral Microbial Communities Of Schizophrenia Patients From Maryland, Usa

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal secretion

Location Information

• Location: USA: Maryland
• Coordinates
  • Lat. (^o): N/A
  • Long. (^o): N/A
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F032313	Metagenome	180	N
F033081	Metagenome	178	Y
F043235	Metagenome	156	N
F045567	Metagenome	152	N
F046433	Metagenome	151	N
F047508	Metagenome	149	N
F053092	Metagenome	141	N
F067846	Metagenome	125	Y
F068942	Metagenome	124	N
F072446	Metagenome	121	N
F077405	Metagenome	117	N
F080164	Metagenome	115	N
F080166	Metagenome	115	N
F081455	Metagenome	114	N
F089057	Metagenome	109	N
F092229	Metagenome	107	N
F092232	Metagenome	107	N
F095629	Metagenome	105	N
F095631	Metagenome	105	N
F095633	Metagenome	105	N
F098763	Metagenome	103	N
F099452	Metagenome	103	N
F099453	Metagenome	103	N
F103432	Metagenome	101	N
F103433	Metagenome	101	N
F103435	Metagenome	101	N
F105376	Metagenome	100	N
F105379	Metagenome	100	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0134350_1000005	All Organisms → cellular organisms → Bacteria	143385
Ga0134350_1000009	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria → Candidatus Saccharimonas → Candidatus Saccharimonas aalborgensis	101799
Ga0134350_1000016	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Myoviridae sp. ctYA416	80298
Ga0134350_1000018	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Myoviridae sp. ctYA416	73733
Ga0134350_1000027	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Myoviridae sp. ctYA416	63393
Ga0134350_1000067	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → unclassified Porphyromonas → Porphyromonas sp. oral taxon 279	40885
Ga0134350_1000258	All Organisms → cellular organisms → Bacteria	19748
Ga0134350_1000276	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → unclassified Porphyromonas → Porphyromonas sp. oral taxon 279	19139
Ga0134350_1000313	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → unclassified Porphyromonas → Porphyromonas sp. oral taxon 279	17547
Ga0134350_1000321	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → unclassified Porphyromonas → Porphyromonas sp. oral taxon 279	17221
Ga0134350_1000477	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Prevotellaceae → Alloprevotella → Alloprevotella sp. oral taxon 473	13131
Ga0134350_1000777	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → unclassified Porphyromonas → Porphyromonas sp. oral taxon 279	9232
Ga0134350_1001267	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria	6426
Ga0134350_1001483	Not Available	5705
Ga0134350_1005105	Not Available	2214
Ga0134350_1020957	Not Available	859
Ga0134350_1025457	Not Available	755
Ga0134350_1040363	Not Available	553

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0134350_1000005	Ga0134350_1000005142	F033081	MYTDITVVHRPKKGVMAWLFRRAMPQDTRPTFVWSRLVAEIENAGYFSRWKFSILAVGLIIMTIATIKMLLFVPGLNQSVVSLLTRGLETFLPTRWATVTAWTVGMAGVFLMGNFTNYTPSQKFLHKIKATRYEVYNTILLLALLEEQAFRSGSERWNWRERVRASVCFGLLHITNIWYSFAAGIALSVTGFGFLLVYLWYYRKYRIQIIATAAAATVHALYNAIALSLIAIVLAIDITKLL*
Ga0134350_1000009	Ga0134350_1000009104	F046433	MVYVKADNYLGTETSDPSFMESRCETTEYEAINDFVQFIEMTKHYLPDYMENCAKELIDELAFLGMPELNFAANALAKRLRHHLEIDNKPVYIDVGNSLSQYRAKNEMKSSQYILSLVLSKFPDDEFEEYEGRLKVYGGRGEIDKSSKILFLDDWIIGGDQVRERISGFEVDNDPESHEASVLVMAASGDYLDNGISAYSRYGGTIYPVEACYVLKNSSDAGGVSRVTGIHSSTDNTFGYEVDGIAYCAIERGILKGERIDDLSLPALANIVRPYRNGKNFDGLSRFRQLLEKE*
Ga0134350_1000009	Ga0134350_100000975	F095633	MKNYENFTEVGRGEGLTEGELRTMGTLAVKATEELKKTTIRKEAVLLGSVPFGSWDEFAKAVQEMAAHKMTAYSYEPIPVKINTKRLIATAFLDDGGEMSVEERFVPEEVFIDLSRTRCDAEEDRNHKSYEFTCPALMEHPDGKLYLTRKAYVISVIDVNGSQEVDFNIIYGGLN*
Ga0134350_1000016	Ga0134350_100001615	F081455	MEITNTENKNLFQQLSSLGFDVNESLLELEKDYSPVEEIGMQNVEIIDSAEEAIQQPLANTDSSIAVNFSQMINKPETEEVKTELVSTPDNGEAKVNVVFPKNEHILGNYVDYESFNKIKESNTETVVRAIHLLNYKMADQNAAMKFGQFVSEFNSECDPNKRLRYELIRHQGREKDLVVRLSTVINGTTKYYADIYPDLNKIDIDHHLISSARK*
Ga0134350_1000016	Ga0134350_100001616	F080166	VNILANFENYTKVVEQIFELNYQLTLKMEVTFNNIIKRINTEIKENFHTEYVVGANKLTTNLRYRYRMRLSPRGETVGVIIDWDNYDDLCNIIDEAIDICDPNNKTSPFKRMYSTAGDLLDIKCDSLKVRYLHLEDRFGDRLDLMPFVLIDDHNGTLIEAMKFRFNNDLIFDVPVSRLKGFRRFLMTYNPLLHAGSMARYMAITPLLGNNRQNMMK*
Ga0134350_1000016	Ga0134350_100001618	F099453	MNRFDIIELAQETLIFVYNTFNGKVNTLDPYTRLNFVAGYLDTKTNIARTTPYGCIYISLEAFADTVEAHKFIDTDQIRNLALEIIIHELTHVDQLIDYKYIKFNNGYRDEIELQCVKQSCQWILDNIQYIRSFGLVVIPEVYQARLANLTNEVYTPKYPMAIAMGKLEYMLGRKFREFSNNNIEIEYVDRLKTHYTFMVCENRIYINSANLNDLGERLLNDKQYTVEYLEYGDSKLVIKITQGA*
Ga0134350_1000016	Ga0134350_100001638	F092229	MNKEYRFKHIPEVVLRNVKFIRENNIDIGTGDDVLECMMDINPVLRQRIYDDYDLAKDVAERRFNSTIEDLDLTTILQKCTTRPYIAILNNIYFRYFNSKLIEDMFKLGESIKVLDLAIEYECEYYTVNSAKTNIRRYMQQAYFDKYAADADIISSHRVLSDPQVNAVKSAEFTYDLLVAARSENFNPEMVRDIFLKYGLKTNSSRNLYNRMDNNLSLFYYLEDYLEEYVNTGKFTYGSQEYHTIKEFKYLPLMNVLTQLTRSNPSGYILNYKLELVKG*
Ga0134350_1000016	Ga0134350_100001666	F105379	MVIHFPLSQSDIESLLSISKLLKCDKILYDRNYVNPIIGVGPEKSYFQTTSFMVDLSPHINNLLVNISDLKNLGKITQLEPSKENPEIAIHKPVVSVFNWDAEYVKACMNSLREYQIDDNIIARTDEFHNTDDYNELMAGSASTGAFRINVGGYMIDIPKSAIPTLKSDHVVATVYNAPNKDFNVLRFKITKRNGIIVNQSMLFLPY*
Ga0134350_1000016	Ga0134350_100001672	F095629	MEVFKMRELIICACLLGCFGVANADAPVEQPKEVKVVHNDDSVALHKKVYKLEQRIERLEKLLAEKEGK*
Ga0134350_1000018	Ga0134350_100001813	F089057	MTNIIPLIAKKYNRKGDTSGTLKSLVDDLVFIEDVDDSLLFITNIPRETKYSIEEVFNIISSNDKYSEVLSNVLSSLNIDLDYHKLLLNAIDSESYKIISLISDNIPTPDLFLSKNNYGCLTTALGKSYTIFDKVLGMVISQLLHTSSKEDKILSIFMIICIINKDIDKLASLCTGYLAITKDEVLVKDLMNESATNAFQYMSEEDIHDVVDDINSRSVLARYLSRM*
Ga0134350_1000018	Ga0134350_100001821	F103435	MKFVFCTEPIYQYYRSYLYADDKDKLDKQLMIEYGDYKDIWDLKQQQDALPENIFVAELTARDYPRNPWNYVSQLISKLTYQYLIDSPDFETIFSEVLFNQSEAEFYEFYKAIDRFYNGSEVFIVVCNDEYSDMVTQMMCNVIRRTYGIHPQIIYDMDDVNSIRDDIDFSPQGAQLAYLQRAAYYKLEAKKNFEPLQIWYPFDMNTYTNALE*
Ga0134350_1000018	Ga0134350_100001849	F095631	MASDAVSVNKTLRSYQETVLNTVQNDTLLNANIYDIHQYIENIKKRYVDEDEITLSMGIFGYLGDVNSNALQNAVTMAAEYSNEAIPIKAKFEKNVISHALMLGINKIFAEPATMQAMFVFYEDELVLNTISDAFRFDRDIKIMVGDYEFHLPYDLIIKRIELPTGEYIYTGMYDTTQSNPIITRNSNDVDPYLKPTVRSKIDGRNVVMLLVDLRQYEYMTYHKTIITNNPLESKMLQFEFDNQLAGFDVDVKEYDQPTRKLKPVYNGLNTDGVQNFCNYTYIDSSTIRVMFDNTSYLPTANTEVTVNLYTSQGANGNISYKDSIYFRVKSDKMNYDRLNLLVIPTSDSQYGIDKKSIADLKRLIPKEALARGSVTNSTDINNYFNTIDDDDNKLFFFKKMDNPLARLYYAFVLMDSPTNIIPTNTIPIEAIRRDFDNISDSNYILTAGNIIKYDGTTNASIAYQASEDELNAARKNEFLYMNPFMCIVNKKPLYVSYYMNIMDVNKLLEFTYVNQDSKVQFIATKMNWYRHYLTERDTYFGDISIMQNIQSDIGLVHKDDPYDPEKITGVDIKVLAVFYTDDKYQVPYRWAEAEFVNYDQGTYVMDYKFKLNTDNKIDKNIKLKINNVYEVGNATRLSPGYMANNMHMKIFVFAKDVFGYNAGLHKSDQIFTADFLEGYSLTNEYTVKYGIDFLYNYSDLIESHIKVKKQDNGQISYIVDRVPVISYDYVNTEERIQDFINNLEKKRIHILDCLDVLEDSFGIDIKFFNTYGPSKLFYVNDGVPLNRVNLSMTFKVKFLTTTDKYLSEYIKNDIRKYIEDKSRISDIHIPNIITYITQKYAENVTYFEFLDFNGYGPGYQHIYRKDESIVGRIPEFLNINTIGTENNALDINIIIA*
Ga0134350_1000027	Ga0134350_100002716	F092232	MNTQAKFIADYNDKNRPKFNDKFFTKSDDDIIEDLKDVILSCERNKFYTIKVLGFEVIDDYTEVQKLLIGDETPSISIKDSDLKILKVTYHVACTKDEDTFDVLIAIPRVIDGAYIHLNGNDYFPLFQLVDGSTYNNTTAAAAKTQSITLKTNSNAVKMLRNFVDLNTTKEKTLRMAMFSVYLFDHKVTLFEYYLARFGWYKTLSKFNFEDIIKISDHDIDDPEYYTFAIANAHMKNPFYISAVKSFVDNDRILQSFIASFAKAISLYATKKTTLDQIYTTEFWVCKLGYNFVSSETSVFTKGNAIIESLENSYDIPTKKRLRLPDHIKEDIYSVLKWMACEFSSIRLKNNLDASSKRIRWSEYIAAMYIMLINVKLRRLPEKHDPNMEAYRIKQQLNTPPMALIAELQKSNLKGFRNMVNDRDSFLQLKYTIKGPSGPGESNSKNVARNVRAIDPSHLGIIDLNTSSASDPGVGGMLCPLNYGVYEWNSFTNEEEPNVWDDNFSKMLNIYREEKGYTSAIMLADDAGLELTDTRDPEAVAFDANLLGQTIAKVARTRAFEKQLRPALINMEDSCSIYFEEV*
Ga0134350_1000027	Ga0134350_100002761	F099452	MDKTYTELLQETLYKIYELKDLNNRDRGKALTIFIGERLNRELILSSMNVFTLYKDIINLDDVSLLAELRHTEWYKDWFTSDKRNSDLIDLSKFNFRVLERFEKEEYLRDAEHYDFEGVSEVDSYDLFDTLREDEDIELFKLAAENILINHGFFNNTDYNLYEIPDEYMSNQEVCLYMCLLNTDNLDFMDKKTFDSTLLYNIVKDRICGSVYFTIFDSLNEDTRTRAR*
Ga0134350_1000067	Ga0134350_10000675	F047508	MLGHRLVECCVKYPYLRRIGEYLRHSFDTEDVGWVVKRSKLCALMEHIYYLWGDTYALSKALCTVYEAVTDGVDLIEGLYEVLFFENVEDNLYATRVVRNVKVALNLLSFGVTEGDKGVVDPYALFVPRGQDLVVGELDEGELQGGATTVEDQDFHKVLYYMVRCELIPSSP*
Ga0134350_1000258	Ga0134350_10002583	F103433	MKEWSKNKPGVVFFFVVWFILSISFIGNFFGTGLWNGWFDGFQKDSSAIVEKTAYCKNKYDYKGPLIAADSKDYNKIMMSQDCNPSQVKPYVSQYGLQARVIAGLSPNDASKIPAYIKRVSIFLAVLTAFLLALVVQKIRALFGRITASVFVVMLAFSPWIAGYARNIYWIEPLLIAPFVISFVGYQYFKKLKKLWLFYIIESVAMFLKLLNGYEYVSTIAISVLVPIIFFELVHKNVKIINLWKQAVPVFAAAVVAFFGAYWVNFISLTDYYGSSDKAANAINARASDRGISGIRSMRAYAVGNFKILRPETYNFINQLVNLDNMANNSGKTYKYIIVNVVNYLLLPAITLPVHINGMFGEFIQSILFWTILGYLIILSSRKIIGKKYSRPFLWSMNFSVIGAFCWLALMPGHALPHAHINGIIFYIPLLLFVYMLIGLWADYVVKRTVKYE*
Ga0134350_1000276	Ga0134350_10002768	F045567	MVTEDVVHTSTHRVEDALLPVDGDILTPRDGTHIVQTERVVVVLVSQEDSIDTIDTETCGLVVEVRATVDEDTLPALGDDEGRGAQTTVTSIRAMAHRAATAYLGDTSAGARTEKNYLHVSRRESYHGKEIPSLSSERGCVVERVVR*
Ga0134350_1000313	Ga0134350_10003134	F098763	MDRRASLRVLSTALYLATKLFEAVVRTTISYDSSDEVEGKGGMNAIPTTVDE*
Ga0134350_1000321	Ga0134350_100032114	F043235	VDEFGTQLTDALLDRPDRSKRELYQGTVNGDDIVQLRHMDEVVPSDEGHLLIDLCDDDPRSLCGGLGIVTRYPEGAIALFIGLAHRDQCDIDRIDTIPKEVWEFMEVTREIVDTLIQVSGTAILVKEVKDGMYMPHHLWSEVPRLGKVQHVEGFHVREALAIIVEGFGEAAGGCHSMAKDQEVPALYCRSHGFEGGRSMASNVLLPGSAH*
Ga0134350_1000477	Ga0134350_10004778	F072446	MKKLVFLLFGLCLYCFTACDSDHEPTKPVRPFHGDTLAQIAWNFPYIVEEHYHSISGIVPEGTTYRVPVIPRSVEDRTKKEYNERDVDKVAHLVFRATVHGDTINRHKKELETIVRQLHALALGTIGTSPVLCGVKSIEAVGIAENGNTYDLSREIKLRIRDYSGRVKYNSGIVTLNCEDTQSKTAKYVVPLGLIREHELAEHIQPELKFYLPVKRCMDFSSIRFAITLFNGKVLSFEHKLPSKSVLQELLQELPNKSVPPNYEPYGFEREATYFTTLWPLPDNKYNEREW*
Ga0134350_1000777	Ga0134350_10007773	F053092	MQSDQGLILCLTHALLVLRTLILEPAEMEDTMDDHAVQLFGVLVAKELSIATHRIKADEHVPRNHIPLTLVEGDDIGIVVMIEKVLIGLQDALITTELVAELADTTVIAGSDLTDPVAKDTLSEARLLDVFVSIVSYKLRFFRHK*
Ga0134350_1001267	Ga0134350_10012672	F105376	MNEKPEVSAKEFGALWANVEHIKESVDRHTTTLERIENIARANVTQAQLAQHEKESEEKYVKRTEIEGVMNFWSLVTSNLAKLFAIALVGLAIYATNNLIQQNKAVTELQEEVQTQVRSK
Ga0134350_1001483	Ga0134350_10014834	F067846	MESLQAQWERKTFDDYDRRCCAEDAYNEAVEREIECIEDDISNGDSDAICAFSEKMFDDEEFLKAVALGTDYEEMRIKILTAMAEDRLEQLEKDYRNGYILND*
Ga0134350_1005105	Ga0134350_10051051	F103432	MKLINSLFSLSLLLALSGLFCTTACQDDAEPTQRAGLISTDSLIHAAKFYDGKAFEHVVSTTAAGLRVSEPRRVVPMLPRQLHVEMEGKTLFRRHNLPSVSAYSFQVLAVGDTIYRQKESDAQFNADLDALFHQSIGIAPRLFGVKELSVLGIDSRGKTRDLGNYSYPLLRGVRIYMAFRSREGVFHEHYEAARVDTFSVKDDWLLNTKAEPSLYVPSFRLLVWDRPADSCCTKLRFTLTLVDGRSLVTEVPLY*
Ga0134350_1005105	Ga0134350_10051052	F080164	MVGLTLCAAPQVTLRERANAFPLITEKDESEIIAPYAWRLPVVPLSLDNREIRNFAKYPALPSLSEGKLTVRVLVVGDTVAVHQDLMDDFAKRCRTTLGFGVRTAPKLFGIKGMHVYGVQKDGSRQAVDKQVTLHLPGFEKAEKPLHYKGQAGQLVLCEYYESHRGDLFLDVANAHPEIFGELCPVVDFHFPVELRRAYAWLLLEIELEDGTKLSTSLQHYDEQTSILDHPARS*
Ga0134350_1020957	Ga0134350_10209572	F077405	GRALPTELFPRLLVAKQRGVFYGFISLCQIKFVKKVFDWLKIVQKQKARLK*
Ga0134350_1025457	Ga0134350_10254571	F032313	LMACDNDTPQEKPREQEKHEVPVPKPKPQFDEVGERIWYGQTPAMRLDSTDYGAGLIWVLEMRTSSIPKQRFDSLFKQTVWEIKDICAVETDWSLAKKIPRFVGGSITKEFTCRNGVILRHMQGIDINQVDTVNYVYNEDLNEIVLEGTRIRWYVLRLNKNAVEFLQQGRPLWGPFDWYYGRNSGRSEVTLEEK*
Ga0134350_1040363	Ga0134350_10403631	F068942	CFTLCTALFAGCGENNLGFVTEVRWSNVKNPKYGDDINITLKAEGETFTTVGDHSQIFFGYDASTLDTFTRHRFPEMDKDTAYYKDIVIYLTRNESKGTATLKLVAPPNRTQQPKQFDFSIEVTPPGTYFFKVRQPALPAKAQ*