3300013869: Clean room microbial communities from NASA Spacecraft Assembly Facility at Jet Propulsion Laboratory, Pasadena, California, USA - InSight In1 SAF170 SPAdes reassembly

Overview

Basic Information

• IMG/M Taxon OID: 3300013869
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0095512 | Gp0111885 | Ga0181468
• Sample Name: Clean room microbial communities from NASA Spacecraft Assembly Facility at Jet Propulsion Laboratory, Pasadena, California, USA - InSight In1 SAF170 SPAdes reassembly
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 33677864
• Sequencing Scaffolds: 30
• Novel Protein Genes: 31
• Associated Families: 14

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta	3
All Organisms → cellular organisms → Eukaryota	4
Not Available	11
All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Acrogymnospermae → Pinopsida → Pinidae → Conifers I → Pinales → Pinaceae → Picea	2
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Sphingobacteriia → Sphingobacteriales	1
All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Acrogymnospermae → Pinopsida → Pinidae → Conifers I → Pinales → Pinaceae → Picea → Picea glauca	1
All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta	2
All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → rosids → rosids incertae sedis → Vitales → Vitaceae → Viteae → Vitis → Vitis vinifera	2
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Cystobacterineae → Myxococcaceae → Corallococcus → unclassified Corallococcus → Corallococcus sp. AB038B	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Bacteroidaceae → Bacteroides → Bacteroides uniformis	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	1
All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → asterids → lamiids → Lamiales → Oleaceae → Oleeae → Olea → Olea europaea → Olea europaea subsp. europaea	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Clean Room Microbial Communities From Nasa Spacecraft Assembly Facility At Jet Propulsion Laboratory, Pasadena, California, Usa
• Type: Engineered
• Taxonomy: Engineered → Built Environment → Unclassified → Unclassified → Unclassified → Clean Room → Clean Room Microbial Communities From Nasa Spacecraft Assembly Facility At Jet Propulsion Laboratory, Pasadena, California, Usa

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Surface (non-saline)

Location Information

• Location: USA: Jet Propulsion Laboratory, Pasadena, California
• Coordinates
  • Lat. (^o): 34.1
  • Long. (^o): -118.1
  • Alt. (m): N/A
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F017428	Metagenome	240	Y
F023843	Metagenome / Metatranscriptome	208	Y
F028713	Metagenome / Metatranscriptome	190	Y
F032009	Metagenome / Metatranscriptome	181	Y
F033665	Metagenome / Metatranscriptome	176	Y
F034461	Metagenome / Metatranscriptome	174	Y
F038985	Metagenome / Metatranscriptome	164	Y
F044253	Metagenome	154	Y
F046363	Metagenome / Metatranscriptome	151	Y
F065766	Metagenome / Metatranscriptome	127	Y
F072954	Metagenome / Metatranscriptome	120	Y
F078089	Metagenome	116	Y
F093243	Metagenome / Metatranscriptome	106	Y
F098287	Metagenome	104	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0181468_100030	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta	19062
Ga0181468_100060	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta	16310
Ga0181468_100122	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta	13388
Ga0181468_100140	All Organisms → cellular organisms → Eukaryota	12751
Ga0181468_100144	Not Available	12579
Ga0181468_100282	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Acrogymnospermae → Pinopsida → Pinidae → Conifers I → Pinales → Pinaceae → Picea	10235
Ga0181468_100295	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Sphingobacteriia → Sphingobacteriales	10023
Ga0181468_100340	Not Available	9444
Ga0181468_100477	Not Available	8254
Ga0181468_100488	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Acrogymnospermae → Pinopsida → Pinidae → Conifers I → Pinales → Pinaceae → Picea	8171
Ga0181468_100728	Not Available	6734
Ga0181468_100832	Not Available	6283
Ga0181468_100907	Not Available	5970
Ga0181468_101048	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Acrogymnospermae → Pinopsida → Pinidae → Conifers I → Pinales → Pinaceae → Picea → Picea glauca	5445
Ga0181468_101226	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta	4890
Ga0181468_101365	Not Available	4525
Ga0181468_101412	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → rosids → rosids incertae sedis → Vitales → Vitaceae → Viteae → Vitis → Vitis vinifera	4435
Ga0181468_101605	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → rosids → rosids incertae sedis → Vitales → Vitaceae → Viteae → Vitis → Vitis vinifera	4004
Ga0181468_101906	All Organisms → cellular organisms → Eukaryota	3428
Ga0181468_102162	Not Available	2981
Ga0181468_102494	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta	2557
Ga0181468_102616	Not Available	2429
Ga0181468_103103	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Cystobacterineae → Myxococcaceae → Corallococcus → unclassified Corallococcus → Corallococcus sp. AB038B	2061
Ga0181468_103164	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Bacteroidaceae → Bacteroides → Bacteroides uniformis	2023
Ga0181468_103352	All Organisms → cellular organisms → Eukaryota	1911
Ga0181468_103446	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	1850
Ga0181468_103531	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → asterids → lamiids → Lamiales → Oleaceae → Oleeae → Olea → Olea europaea → Olea europaea subsp. europaea	1797
Ga0181468_105561	Not Available	1140
Ga0181468_106874	All Organisms → cellular organisms → Eukaryota	942
Ga0181468_112749	Not Available	559

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0181468_100013	Ga0181468_10001316	F072954	MFDKRVKAEDFYIGDKVLRWDSRREDKGKHAKFYFLWKGPFIISVVQGNNTYFLKSEEGNTAEEGPVNGRMLKHYHDPF*
Ga0181468_100030	Ga0181468_10003024	F017428	MGSLQGITIDIEGASTLADFEVIEIVDENNPYPALLGIDWATDMNRVINLKKRKMIFEKKSLRVVVPLDHVEGALYTEPVHDDDSDDDLDCIYKITVRE*
Ga0181468_100060	Ga0181468_1000601	F078089	MGLPEGKIIEKNMLSSSSLIKNKEVLVSNDWGKIGKKT*
Ga0181468_100122	Ga0181468_1001223	F078089	MGFPEGKIIEQAYVILLKLDKNKEVLVSNDWGKIEKKT*
Ga0181468_100140	Ga0181468_10014022	F046363	MVLDSLACINMYCNIERNIMKNQAGSPGFWIQGKISVYMCFMCYALTLFIFCVLEFVCK*
Ga0181468_100144	Ga0181468_1001449	F023843	MASSGKIEIEKFNGQGFELWKVKMEDLLVDKDQWIAVDPGTKPMGVPDEEWKTLDRKEKSTI*
Ga0181468_100282	Ga0181468_1002825	F017428	MVRLQGITVDIEGASALADFELIEIVDDNNPYPVLLGIEWASDMNGVINLKKRKMIFEKKSLCVFVPLDLAEGSRCMEPVRDYERDNELDYIYKITT*
Ga0181468_100295	Ga0181468_10029510	F032009	MKYIFLVALLSFTADRCFSQTYISLAPSLTNDAGTIAEKTNLALEVGRQWDVFSLGLDVGKTSLGKVSGRDTTAYLEIRPNLNIFQQGKFTNTFTAGIGYIFNSKQSLMTELTSGIEYSFRPTVHFNIFFGQYYYSGRYDASSTTFFGISVMRYFSDSKSSPLINQKAQK*
Ga0181468_100340	Ga0181468_1003408	F034461	MLGYDFEIIYEKGKQNVVADALSRKDEDVEEFLCATCIIQLDWVKEARDEWKDDKEVWALI*
Ga0181468_100477	Ga0181468_1004772	F033665	MLIWGSIGCALAMKIGGEAKAHEISKTQKWFGQIVPGLENIKIINIFNGVPKSKLRKNKILMGINIKLG*
Ga0181468_100488	Ga0181468_1004881	F017428	MGRLQEVIVDTEGASTLADFEVIEIVNDRNPYPTLLGIDWASDMNGVINLKKRKMIFEKKDLHTVVPLDPAEGPRYIELVHDYESDDDLDQIYKIMA*
Ga0181468_100728	Ga0181468_1007286	F065766	MADEKKDEVGGDPIKILLEEALERQWNVMMDSFAQIL*
Ga0181468_100832	Ga0181468_1008322	F044253	MLLEYVPMEEKYADILTKDLSRCKFEFHRDRIEVANNIFLVEREC*
Ga0181468_100907	Ga0181468_10090711	F033665	LFDFSQQTPLQKIELTILLIWGSIGYALAMKIGGEAKAHEISKIQKWFGQILTILGDIKIINIFNGVPKSKLRKN*
Ga0181468_101048	Ga0181468_1010484	F028713	MVEYKKVLLVKVDTLKNTTDALTNPLSTKKFSCCRETMGVVGLDQ*
Ga0181468_101226	Ga0181468_1012262	F093243	MLLSYIPTEDQDADILMKALTKRKFEYHRGRIGVANNPYIVEREC*
Ga0181468_101365	Ga0181468_1013658	F017428	MTVDIEGVITKTDFEVIEIFDDSNPYPALLGIDWAIDMNGVINRKRWKMTFERKSLWVIVSLDPAEGKHYTKLVRDKDSDDELECIYR*
Ga0181468_101412	Ga0181468_1014127	F028713	MIEDKRMLLVKVNALKNVADALTKLVSSEKFCWCKETMGVAGLDR*
Ga0181468_101605	Ga0181468_1016052	F093243	MLLSYIPTEDQDADILMKALTRSKFEYHRGRIGVVDNPYLIEREC*
Ga0181468_101906	Ga0181468_1019063	F028713	MIEDRKVLLVKVDTLKNTADALTKSVSSEKFSWCREAMGISGQEK*
Ga0181468_102162	Ga0181468_1021621	F034461	SLIMLLEVLDYDFDIIYKKGKQNVVADALSRKDEDVKTLLCAISIIQPDWITKAKDEWKNEKEVWA*
Ga0181468_102494	Ga0181468_1024941	F044253	MLLQYISTKEQDADILTKALSKCKFEFHRDTIRVADSPFLVEREC*
Ga0181468_102616	Ga0181468_1026162	F033665	FGGEVGAHEISNTQKGLGQILNRLGDIIIINIFNGVPKSKVRENKIVMCINMNLC*
Ga0181468_103103	Ga0181468_1031031	F017428	MVDIEGASIQEDFEVIEIVDDNNPYPVLLGIDSATDMNGFISLKKHKMIFEKKSLHVVVPLDPTEGARYTETVCNDDSDDDIDCVYNITMQE*
Ga0181468_103164	Ga0181468_1031641	F038985	PQNASRSLGPEKLPKIVNYATIKETEKPKETVVGVQVE*
Ga0181468_103352	Ga0181468_1033521	F046363	SMVLDALACINMYCNIERNIMKNHAGGLNFGIQGKISVYMCFICYAIALFIFCVLELVCR
Ga0181468_103446	Ga0181468_1034463	F098287	MEQNIPVGKLWMVVNGWLLDKTAQQNGRGKPDVHIDVKDYINTKYKALNKHVSQNGGFGRDYVTGNKTQPKEIIEEFITVIDNTR*
Ga0181468_103531	Ga0181468_1035314	F033665	LIWGSIECALAIKISGEAKAHEIFKTKKWFGQIPTDFGDIKIINIFNGVPKFKLRINKILMGINIKLG*
Ga0181468_105561	Ga0181468_1055611	F017428	VILDIEGTSTLADFEVIEIVYDNNPYPMLLGISFTIGMNGVINLNKQKMIFEKKSLGVILPLDPAEGSQYTELVRDYESDDDLDYFYKITAQDKD*
Ga0181468_106874	Ga0181468_1068741	F028713	MVEDKKVLLVKVDILKNTLDALKNFVSTKKFSWCIETLDIAWLDQ*
Ga0181468_112749	Ga0181468_1127491	F028713	EDKKVLLVKVDTLKNTADALTKSVSSEKFSWCRETMGVSGLKSY*