3300013833: Sewage treatment plant microbial communities from Vermont, USA - CLO_W

Overview

Basic Information

• IMG/M Taxon OID: 3300013833
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0116849 | Gp0137222 | Ga0119880
• Sample Name: Sewage treatment plant microbial communities from Vermont, USA - CLO_W
• Sequencing Status: Permanent Draft
• Sequencing Center: Norwich University
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 395172049
• Sequencing Scaffolds: 27
• Novel Protein Genes: 27
• Associated Families: 22

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria	3
All Organisms → cellular organisms → Bacteria → Proteobacteria	5
All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	2
All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	4
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	2
All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	1
All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Planctomycetales → Planctomycetaceae → Crateriforma → Crateriforma conspicua	1
All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Isosphaerales → Isosphaeraceae	1
All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Isosphaerales → Isosphaeraceae → Singulisphaera → Singulisphaera acidiphila	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1
Not Available	4
All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium SCN 57-15	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Sewage Treatment Plant Microbial Communities From Vermont, Usa
• Type: Engineered
• Taxonomy: Engineered → Wastewater → Industrial Wastewater → Unclassified → Unclassified → Sewage Treatment Plant → Sewage Treatment Plant Microbial Communities From Vermont, Usa

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Water (non-saline)

Location Information

• Location: USA: Vermont
• Coordinates
  • Lat. (^o): 43.727094
  • Long. (^o): -72.425964
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000690	Metagenome / Metatranscriptome	935	Y
F001844	Metagenome / Metatranscriptome	627	Y
F004010	Metagenome / Metatranscriptome	457	Y
F004285	Metagenome / Metatranscriptome	445	Y
F009010	Metagenome / Metatranscriptome	324	Y
F011492	Metagenome / Metatranscriptome	290	Y
F012885	Metagenome / Metatranscriptome	276	Y
F021596	Metagenome / Metatranscriptome	218	Y
F028103	Metagenome / Metatranscriptome	192	Y
F033377	Metagenome	177	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0119880_1000016	All Organisms → cellular organisms → Bacteria	130554
Ga0119880_1000648	All Organisms → cellular organisms → Bacteria → Proteobacteria	18124
Ga0119880_1002828	All Organisms → cellular organisms → Bacteria	7432
Ga0119880_1004589	All Organisms → cellular organisms → Bacteria → Proteobacteria	5406
Ga0119880_1004639	All Organisms → cellular organisms → Bacteria	5356
Ga0119880_1004810	All Organisms → cellular organisms → Bacteria → Proteobacteria	5238
Ga0119880_1005514	All Organisms → cellular organisms → Bacteria → Proteobacteria	4794
Ga0119880_1005773	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	4646
Ga0119880_1006473	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	4290
Ga0119880_1008971	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	3442

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0119880_1000016	Ga0119880_1000016120	F064854	LRFPARRATVLNMHTVSQTPLGTLLYKEFPELDLVDASEARFLTLAVRDAVRTARREGRFDGSFHHYRVRAWREQLGSRLVTVTWRVSLDGRPLVGDTEILEAPLCVSV*
Ga0119880_1000648	Ga0119880_100064814	F075045	MWTGQVPMNGDHFNATFSGHMYEGDHFPDGTNHGTTSMMIDHHSTSTTSGRYTGSGDAGTFNMSLSPMWNRPASLGSVAGVYTRTTSNGYTMTMTVGANGQIMASDSRGCLINGTVTVPDATHNMYGMAATVTSCGSLNGHYQGMGTLLDADAMTDWMIAMHPLEHGGHSRGGSMMGGSPMMGRNTVPTGQHNLFMFSMANGQNAIMDALAR*
Ga0119880_1002828	Ga0119880_10028287	F004010	MPLGHNVQKNIKELYADNKKSGKAKGAQGRPRSREQIIAVAYAAAKPKKKKNSY*
Ga0119880_1004589	Ga0119880_10045891	F012885	MPYRIRWEGHGVYRRFYGVVTRQEFRDAYEEMCGDVRYEGIRYIISDYLEALPDPDLTERDLRAQARLERLRFYDSPDTVQAMIGTDPEIVEYIRYYESLRVSPHCLGYFATVADARRWIAGNPRHGWSRPPASAASGPTAP
Ga0119880_1004639	Ga0119880_10046395	F050165	MNPTIERALGASTPALRCLAVLDAMLVPALGLYWIKTLPATGGLVGAVLGVFCLWIGARRAYRALYEFEAYRWLTLRLAKLAIATWVVMAMVKLVWFIQGSL*
Ga0119880_1004810	Ga0119880_10048105	F064854	MYSVSQFGGGTLLYQESPALALVDAPEARFLTSAVRDAVRMARQQGQFDARFHHYRVRAWRDSLGSRLVTVSWRVTRDSQPVAGDTHILPAP*
Ga0119880_1005514	Ga0119880_10055146	F064854	MTVSNATDGTLLYQSFPALDLIEASEARFLSSAVRDAVRTAQRQGRFEASFHQYRVRAWRESLGSRLVTVTWRVTRGPEPVAGDTHVLPAS*
Ga0119880_1005773	Ga0119880_10057732	F011492	MFGFGKAQREPLVDIKSTERWLASFPTNDPLAIHGEVLAELGRIAAPAAKRSPQGLEAVFHLDSHCAGLRKSLTTQYIEHATRSSKIENQLWSAMFDLTQAFLVSYYAFAREVSHHAQSAKWQQLLPELLCHQIIHMGLDAKIRLYRYEQWIPAKWAELHELFSLACSRQFERAQLVPDEGGSATTIEHEYLIALLLQLMNAGNMTARHLEWVAGQLDDWCAQLRLSLEPSSVTSFYVDLGSREGLRRRTPAPLEGRVLFLDTRPLHSVLMQNVVMLEQKIRAQPLSDRTPKRSEQLGLLSKLASQVDPEFKPFARRGERTAAVGTVDAIVGFAKISGFLREEDQAPEPRLVAGKSFGNTMELAVFGRVRNETDQRVEQARRRFATFAAPGGPWEVKDVSQTGFRLLAPMSVANAVTLGTLAAIRPHGQAPWALGIVRRMKRMTADRAEIGLQVIGNSLIGVDLVEQRRSADADYSVDGEATTINGRTFHGLFLALRKRDADSAVQSLIVPAVEYQPAKRLKLMTSQAVNPVRFGRLLEQQPDWVWATVESLDLTSPLPSISTILGEKIPPAAANE*
Ga0119880_1006473	Ga0119880_10064731	F000690	MRLASLFGPDAIAQAPRAPRLQTEAEVRVVVGLQALTRSVAEIDRLPEQARTRGVAASYDEVTQIVNPNANPESVARRIRGAMWRLTDRSETGCRLTAPAKEAPGKLGELIAIKEGQLWTLAVVRRMQRLQVDEVTVGVEIIARRLVRVLMRSWVAPPDSGRTNTERPFFGLYLPAHPENRQSSHRSLIGPEDKFGSGGMVELDTGNARYLIRFTQTLEQQAGWSWAMFNAVRKLSG*
Ga0119880_1008971	Ga0119880_10089711	F077414	DWREAAEALEVPAAKFGRLLTVQDAVRDAARNWRVARASTV*
Ga0119880_1009801	Ga0119880_10098015	F004285	MSLIWIANRSINVSPRVRLVADADAEALRRKREALAWRPEGGFLRDQHVERPRVATPRATPSS*
Ga0119880_1010152	Ga0119880_10101522	F068764	LIAVLAAALYLILRGMGIIHDADFAVWVKAALLGVFLLASAINIKIGNALWAAIFAALAVGWNPWVRATGWAEPLPWDKWAMAVSVVCGLVAGAFVVRYWGRGETA*
Ga0119880_1014534	Ga0119880_10145343	F009010	MFDPENFYLLVNHPTLIVVPIILFAATALWSQSRTAWAATVAWNLYLIYELGMKAGEFCGGDACMKRTPLYVVYPILAILSMLALVQAYVRIRDKRAREQGLAPADISAPTRP*
Ga0119880_1022285	Ga0119880_10222855	F059094	METIAEALRLLKRQACIQNDVRRARGSRVVEERELFLIRNRLAQFPAAVQAITLTAAELHRPVDTLSVGDVEKRC*
Ga0119880_1029922	Ga0119880_10299221	F097376	MKKAVSPKKNKTAADVVPQEKKQTKTGPVELDLADLKKVSGGLPNGTWNRVK*
Ga0119880_1034517	Ga0119880_10345171	F028103	MPLSLSLPAVESRPANPPEIRLAKVSPWLDECLKREPIIAARVIGDALAATNRVAMSDSKRLDLAERYWDAAGLLWLPLERQFVRASHPLSGEALEAAKAALTLSNELAVAYKHLLASEADKRLSMGGQRLLVALVHRCLQGTTRVLVNSYLSYAPVPPRTWHDAHLIYAFARERNIHLIPVAPDQPEATPDRLTIQMLLLALANPYGFLPGQLPIVLRYVQEYAHWAKLTDIAPVHRMAKAVAIVPVGHDFPPFSANKGGSIEGSKLFLLTFDLAFQIQEQLRALEAGYA
Ga0119880_1034675	Ga0119880_10346751	F001844	MIQPMLSWFRSFSDPLASANNASRWIGQLPAADAATLQTEALEVVAGFPGARRDAGPGQVEALLRIDGRVEPIIAELTRQYTQNYQKSTNIESRLWHSVFDLVKAFIAAYGIALKAGYPRADNKRWRAILPWVIVRLAHYRGLDGKYRLFRYSHWIPAQWREFHELYEFARMRGWQREQLIFGVGAFAKPGVSFEQEYLKTLLLMRLDSGNFTPDQVEWVARQLEDWTPTLALTPPPSEGAPFFVDLTGTTGLRRRDRAQAGGRVMFLGFLAPNGSLLP
Ga0119880_1037414	Ga0119880_10374141	F021596	EVREFAGHADIRTTEVYFVRREEDAEVAARRIQIRITGCKSE*
Ga0119880_1038714	Ga0119880_10387141	F087603	FATVAQAEGVSLSVARRLLRVVEGAKATPSVPALGRATREAGTRAGGLLRVLDEAARPKVKQATADEIFLAEGPS*
Ga0119880_1039770	Ga0119880_10397704	F035652	LATGSNDIDEIYRRMAVIRREQHTNVRESVAGAETVVDWGRYTWTYPWIALGAAAVVGYLVYTGCHQTVTTDTTSPADGTNAGEPVTGVKAKGQEGSRIGQRLLLTAWDIVFPVALRAGQNFVLHWLEQQHPPSTVGRAGLASVAGAREGWTGRA
Ga0119880_1050458	Ga0119880_10504582	F033377	VAQERMARDLGDAVPTLLYPRIEEGAHTMAFIEACVRSQASGRWETVARSAAPPRPDGAV
Ga0119880_1062514	Ga0119880_10625142	F075045	HGTTSMMVDHHSTNVTSGRYSGSGDAGTFNMSLSPMWDRPASIGTVAGVYTRSTSNGYTMTMTMSANGQLTASDSRGCVINGSVGVPDATHNLYRIDATVTSCGSLDGTYSGMGALLDADAMQDWMTAMHPLEHGGHSHGGSMMGGSPMMGRNTVPTGQRNLFMFSLVNSQNAMMDALAR
Ga0119880_1066949	Ga0119880_10669493	F009010	MVDLPESFYLLVNSPMLIAIPIVAFAALALWSHSVTAWVAAGAWNLYLIYELGMKAEEFCTGAACLKRTPLYAVYPMLGVLALAIVEVYVRSGLSRMRTHTRT
Ga0119880_1077265	Ga0119880_10772652	F084316	MEQCGMAKFEVGDRVIITEGDFKGERGAIVDKKLIGDGLVVALEDSGREIKTEEGHVNLLERD*
Ga0119880_1098037	Ga0119880_10980371	F033941	RLQYLALLKRLLRQWAIPPARQFNRLPSRARVVMCAGLAGVWQYSKGVHAGVNRPPTGLPPMANCQVINHTPAGYALRQTDSVPAALRIGELVALRIEGRNSLQIAMVRWFRNTLKGSGLEFGCELLSDNPEAAAAAAEDAAPGSYQPVVVLPEDAASGPEASPAQIIVPAGAFGLEQAVTLRRGKDNGFAVLTKLVEQGPGFELYEFVSVG*
Ga0119880_1106922	Ga0119880_11069221	F064854	LSGLDASEARFLHSAVRDAVRMAKRNGNYSARFHNYRVRAWREPLGSRLVTVTWRVSLYDRPLFGDTEILEAPLCAAV*
Ga0119880_1127147	Ga0119880_11271472	F092530	MSRPRTVSLWETVGLLALGAITVFCLMPTLQKNYAEPHLRASLFATIGACLIYPAAILVYARKAISQRNGDWKI