Metagenome Family F077414

Basic Information
Family ID	F077414
Family Type	Metagenome
Number of Sequences	117
Average Sequence Length	48 residues
Representative Sequence	LEAWDWREAAEALEVPPAKFGRLLTLQDAVREAARNWPGAAESTV
Number of Associated Samples	90
Number of Associated Scaffolds	117

Quality Assessment
Transcriptomic Evidence	No
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	0.00 %
% of genes near scaffold ends (potentially truncated)	98.29 %
% of genes from short scaffolds (< 2000 bps)	89.74 %
Associated GOLD sequencing projects	82
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.55

Most Common Taxonomy
Group	Bacteria (61.538 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil (27.350 % of family members)
Environment Ontology (ENVO)	Unclassified (41.026 % of family members)
Earth Microbiome Project Ontology (EMPO)	Unclassified (41.880 % of family members)

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 35.62% β-sheet: 0.00% Coil/Unstructured: 64.38%
Feature Viewer

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Pfam ID	Name	% Frequency in 117 Family Scaffolds
PF01521	Fe-S_biosyn	71.79
PF00334	NDK	20.51
PF04055	Radical_SAM	3.42
PF09976	TPR_21	0.85
PF13424	TPR_12	0.85

COG ID	Name	Functional Category	% Frequency in 117 Family Scaffolds
COG0316	Fe-S cluster assembly iron-binding protein IscA	Posttranslational modification, protein turnover, chaperones [O]	71.79
COG4841	Uncharacterized conserved protein YneR, related to HesB/YadR/YfhF family	Function unknown [S]	71.79
COG0105	Nucleoside diphosphate kinase	Nucleotide transport and metabolism [F]	20.51

Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	61.54 %
Unclassified	root	N/A	38.46 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	61.54 %
Unclassified	root	N/A	38.46 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	61.54 %
Unclassified	root	N/A	38.46 %

Name	Rank	Taxonomy	Distribution
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	61.54 %
Unclassified	root	N/A	38.46 %

Name	Rank	Taxonomy	Distribution
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	52.99 %
Unclassified	root	N/A	38.46 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	0.85 %

Name	Rank	Taxonomy	Distribution
Nevskiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales	41.88 %
Unclassified	root	N/A	38.46 %
Xanthomonadales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales	0.85 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	0.85 %

Name	Rank	Taxonomy	Distribution
Steroidobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Steroidobacteraceae	41.88 %
Unclassified	root	N/A	38.46 %
unclassified Xanthomonadales	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → unclassified Xanthomonadales	0.85 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	0.85 %

Name	Rank	Taxonomy	Distribution
Steroidobacter	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Steroidobacteraceae → Steroidobacter	41.88 %
Unclassified	root	N/A	38.46 %
Xanthomonadales bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → unclassified Xanthomonadales → Xanthomonadales bacterium	0.85 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	0.85 %

Name	Rank	Taxonomy	Distribution
Steroidobacter denitrificans	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Steroidobacteraceae → Steroidobacter → Steroidobacter denitrificans	41.88 %
Unclassified	root	N/A	38.46 %
Xanthomonadales bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → unclassified Xanthomonadales → Xanthomonadales bacterium	0.85 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	0.85 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000955\|JGI1027J12803_108459004	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	2338	Open in IMG/M
3300001213\|JGIcombinedJ13530_108419598	Not Available	537	Open in IMG/M
3300003858\|Ga0031656_10070568	All Organisms → cellular organisms → Bacteria → Proteobacteria	1330	Open in IMG/M
3300003860\|Ga0031658_1039177	All Organisms → cellular organisms → Bacteria → Proteobacteria	810	Open in IMG/M
3300004050\|Ga0055491_10089363	Not Available	749	Open in IMG/M
3300004146\|Ga0055495_10198051	Not Available	528	Open in IMG/M
3300004151\|Ga0066602_10238501	Not Available	795	Open in IMG/M
3300004155\|Ga0066600_10604710	Not Available	547	Open in IMG/M
3300004184\|Ga0066401_1006465	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	1697	Open in IMG/M
3300004282\|Ga0066599_101244413	Not Available	558	Open in IMG/M
3300004481\|Ga0069718_10012272	Not Available	540	Open in IMG/M
3300005293\|Ga0065715_10808713	Not Available	607	Open in IMG/M
3300005827\|Ga0074478_1454266	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	1128	Open in IMG/M
3300005833\|Ga0074472_10331317	Not Available	724	Open in IMG/M
3300006237\|Ga0097621_101478377	Not Available	644	Open in IMG/M
3300009081\|Ga0105098_10774441	Not Available	516	Open in IMG/M
3300009085\|Ga0105103_10859139	Not Available	530	Open in IMG/M
3300009091\|Ga0102851_11550888	Not Available	740	Open in IMG/M
3300009091\|Ga0102851_11646423	Not Available	719	Open in IMG/M
3300009091\|Ga0102851_12296967	Not Available	615	Open in IMG/M
3300009091\|Ga0102851_13253973	Not Available	522	Open in IMG/M
3300009111\|Ga0115026_10532379	All Organisms → cellular organisms → Bacteria → Proteobacteria	880	Open in IMG/M
3300009111\|Ga0115026_11203937	Not Available	617	Open in IMG/M
3300009120\|Ga0117941_1014519	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	2091	Open in IMG/M
3300009153\|Ga0105094_10237601	All Organisms → cellular organisms → Bacteria → Proteobacteria	1045	Open in IMG/M
3300009167\|Ga0113563_10157364	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	2198	Open in IMG/M
3300009167\|Ga0113563_11586197	All Organisms → cellular organisms → Bacteria → Proteobacteria	773	Open in IMG/M
3300009167\|Ga0113563_13481548	Not Available	533	Open in IMG/M
3300009170\|Ga0105096_10121992	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	1305	Open in IMG/M
3300009176\|Ga0105242_10644317	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	1029	Open in IMG/M
3300009179\|Ga0115028_10635152	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	804	Open in IMG/M
3300009179\|Ga0115028_11692264	Not Available	546	Open in IMG/M
3300009430\|Ga0114938_1029811	All Organisms → cellular organisms → Bacteria → Proteobacteria	2150	Open in IMG/M
3300009430\|Ga0114938_1039246	Not Available	1817	Open in IMG/M
3300009455\|Ga0114939_10336634	Not Available	647	Open in IMG/M
3300009509\|Ga0123573_11220251	Not Available	701	Open in IMG/M
3300009870\|Ga0131092_10052026	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	5473	Open in IMG/M
3300010399\|Ga0134127_12589960	Not Available	587	Open in IMG/M
3300011405\|Ga0137340_1114620	Not Available	518	Open in IMG/M
(restricted) 3300013136\|Ga0172370_10422840	Not Available	726	Open in IMG/M
3300013833\|Ga0119880_1008971	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	3442	Open in IMG/M
3300014266\|Ga0075359_1025131	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	909	Open in IMG/M
3300014268\|Ga0075309_1200333	Not Available	528	Open in IMG/M
3300014295\|Ga0075305_1087104	Not Available	615	Open in IMG/M
3300014305\|Ga0075349_1051657	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	839	Open in IMG/M
3300014306\|Ga0075346_1018099	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	1217	Open in IMG/M
3300014322\|Ga0075355_1038844	All Organisms → cellular organisms → Bacteria → Proteobacteria	1027	Open in IMG/M
3300014325\|Ga0163163_12775161	Not Available	546	Open in IMG/M
3300015371\|Ga0132258_10135515	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Steroidobacteraceae → Steroidobacter → Steroidobacter denitrificans	5880	Open in IMG/M
3300018469\|Ga0190270_12827024	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Steroidobacteraceae → Steroidobacter → Steroidobacter denitrificans	548	Open in IMG/M
3300022204\|Ga0224496_10419273	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Steroidobacteraceae → Steroidobacter → Steroidobacter denitrificans	539	Open in IMG/M
3300022213\|Ga0224500_10266348	Not Available	623	Open in IMG/M
3300022214\|Ga0224505_10147936	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Steroidobacteraceae → Steroidobacter → Steroidobacter denitrificans	907	Open in IMG/M
3300024895\|Ga0208508_1014399	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Steroidobacteraceae → Steroidobacter → Steroidobacter denitrificans	1697	Open in IMG/M
3300025958\|Ga0210069_1034920	Not Available	696	Open in IMG/M
3300025981\|Ga0207640_11739913	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → unclassified Xanthomonadales → Xanthomonadales bacterium	563	Open in IMG/M
3300026026\|Ga0210129_1102471	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Steroidobacteraceae → Steroidobacter → Steroidobacter denitrificans	586	Open in IMG/M
3300027427\|Ga0207472_104116	Not Available	533	Open in IMG/M
3300027715\|Ga0208665_10024597	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Steroidobacteraceae → Steroidobacter → Steroidobacter denitrificans	1630	Open in IMG/M
3300027871\|Ga0209397_10038759	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Steroidobacteraceae → Steroidobacter → Steroidobacter denitrificans	1689	Open in IMG/M
3300027871\|Ga0209397_10159784	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Steroidobacteraceae → Steroidobacter → Steroidobacter denitrificans	1008	Open in IMG/M
3300027877\|Ga0209293_10672601	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Steroidobacteraceae → Steroidobacter → Steroidobacter denitrificans	548	Open in IMG/M
3300027885\|Ga0209450_10037504	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Steroidobacteraceae → Steroidobacter → Steroidobacter denitrificans	2903	Open in IMG/M
3300027890\|Ga0209496_10160587	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Steroidobacteraceae → Steroidobacter → Steroidobacter denitrificans	1036	Open in IMG/M
3300027890\|Ga0209496_10507326	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Steroidobacteraceae → Steroidobacter → Steroidobacter denitrificans	641	Open in IMG/M
3300027897\|Ga0209254_10549027	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Steroidobacteraceae → Steroidobacter → Steroidobacter denitrificans	825	Open in IMG/M
3300027899\|Ga0209668_10010241	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Steroidobacteraceae → Steroidobacter → Steroidobacter denitrificans	4378	Open in IMG/M
3300028889\|Ga0247827_11158664	Not Available	534	Open in IMG/M
3300031665\|Ga0316575_10116486	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Steroidobacteraceae → Steroidobacter → Steroidobacter denitrificans	1091	Open in IMG/M
3300031740\|Ga0307468_101799506	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Steroidobacteraceae → Steroidobacter → Steroidobacter denitrificans	580	Open in IMG/M
3300031834\|Ga0315290_10507002	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Steroidobacteraceae → Steroidobacter → Steroidobacter denitrificans	1053	Open in IMG/M
3300031873\|Ga0315297_10680041	Not Available	862	Open in IMG/M
3300031903\|Ga0307407_11021716	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Steroidobacteraceae → Steroidobacter → Steroidobacter denitrificans	640	Open in IMG/M
3300032002\|Ga0307416_101519629	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Steroidobacteraceae → Steroidobacter → Steroidobacter denitrificans	775	Open in IMG/M
3300032004\|Ga0307414_11030455	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Steroidobacteraceae → Steroidobacter → Steroidobacter denitrificans	758	Open in IMG/M
3300032092\|Ga0315905_11051218	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Steroidobacteraceae → Steroidobacter → Steroidobacter denitrificans	680	Open in IMG/M
3300032126\|Ga0307415_102205639	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Steroidobacteraceae → Steroidobacter → Steroidobacter denitrificans	539	Open in IMG/M
3300032143\|Ga0315292_11247364	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Steroidobacteraceae → Steroidobacter → Steroidobacter denitrificans	610	Open in IMG/M
3300032157\|Ga0315912_11387217	Not Available	555	Open in IMG/M
3300032256\|Ga0315271_10979608	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Steroidobacteraceae → Steroidobacter → Steroidobacter denitrificans	730	Open in IMG/M
3300032401\|Ga0315275_10707441	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Steroidobacteraceae → Steroidobacter → Steroidobacter denitrificans	1120	Open in IMG/M
3300033406\|Ga0316604_10046517	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Steroidobacteraceae → Steroidobacter → Steroidobacter denitrificans	2229	Open in IMG/M
3300033408\|Ga0316605_10504751	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Steroidobacteraceae → Steroidobacter → Steroidobacter denitrificans	1114	Open in IMG/M
3300033408\|Ga0316605_10522962	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Steroidobacteraceae → Steroidobacter → Steroidobacter denitrificans	1096	Open in IMG/M
3300033408\|Ga0316605_10722487	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Steroidobacteraceae → Steroidobacter → Steroidobacter denitrificans	941	Open in IMG/M
3300033413\|Ga0316603_10882320	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Steroidobacteraceae → Steroidobacter → Steroidobacter denitrificans	842	Open in IMG/M
3300033413\|Ga0316603_11693868	Not Available	599	Open in IMG/M
3300033413\|Ga0316603_12218056	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Steroidobacteraceae → Steroidobacter → Steroidobacter denitrificans	518	Open in IMG/M
3300033414\|Ga0316619_11660371	Not Available	576	Open in IMG/M
3300033416\|Ga0316622_100338280	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Steroidobacteraceae → Steroidobacter → Steroidobacter denitrificans	1669	Open in IMG/M
3300033416\|Ga0316622_100499464	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Steroidobacteraceae → Steroidobacter → Steroidobacter denitrificans	1385	Open in IMG/M
3300033416\|Ga0316622_101610515	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Steroidobacteraceae → Steroidobacter → Steroidobacter denitrificans	757	Open in IMG/M
3300033416\|Ga0316622_102798714	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Steroidobacteraceae → Steroidobacter → Steroidobacter denitrificans	559	Open in IMG/M
3300033419\|Ga0316601_100066229	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Steroidobacteraceae → Steroidobacter → Steroidobacter denitrificans	2761	Open in IMG/M
3300033419\|Ga0316601_101159241	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Steroidobacteraceae → Steroidobacter → Steroidobacter denitrificans	774	Open in IMG/M
3300033419\|Ga0316601_101694917	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Steroidobacteraceae → Steroidobacter → Steroidobacter denitrificans	637	Open in IMG/M
3300033434\|Ga0316613_10393005	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Steroidobacteraceae → Steroidobacter → Steroidobacter denitrificans	931	Open in IMG/M
3300033434\|Ga0316613_10953730	Not Available	590	Open in IMG/M
3300033481\|Ga0316600_10479478	All Organisms → cellular organisms → Bacteria → Proteobacteria	861	Open in IMG/M
3300033481\|Ga0316600_11022823	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Steroidobacteraceae → Steroidobacter → Steroidobacter denitrificans	585	Open in IMG/M
3300033482\|Ga0316627_101349944	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Steroidobacteraceae → Steroidobacter → Steroidobacter denitrificans	713	Open in IMG/M
3300033482\|Ga0316627_102521825	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Steroidobacteraceae → Steroidobacter → Steroidobacter denitrificans	542	Open in IMG/M
3300033482\|Ga0316627_102757094	Not Available	521	Open in IMG/M
3300033483\|Ga0316629_10790987	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Steroidobacteraceae → Steroidobacter → Steroidobacter denitrificans	727	Open in IMG/M
3300033485\|Ga0316626_10821371	All Organisms → cellular organisms → Bacteria → Proteobacteria	816	Open in IMG/M
3300033485\|Ga0316626_12116414	Not Available	510	Open in IMG/M
3300033487\|Ga0316630_11240404	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Steroidobacteraceae → Steroidobacter → Steroidobacter denitrificans	663	Open in IMG/M
3300033487\|Ga0316630_11272657	Not Available	655	Open in IMG/M
3300033488\|Ga0316621_10100610	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Steroidobacteraceae → Steroidobacter → Steroidobacter denitrificans	1622	Open in IMG/M
3300033488\|Ga0316621_10381647	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Steroidobacteraceae → Steroidobacter → Steroidobacter denitrificans	954	Open in IMG/M
3300033493\|Ga0316631_10123043	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Steroidobacteraceae → Steroidobacter → Steroidobacter denitrificans	940	Open in IMG/M
3300033521\|Ga0316616_102930638	Not Available	643	Open in IMG/M
3300033521\|Ga0316616_104066144	Not Available	550	Open in IMG/M
3300034052\|Ga0373889_074265	Not Available	551	Open in IMG/M
3300034128\|Ga0370490_0028030	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Steroidobacteraceae → Steroidobacter → Steroidobacter denitrificans	1873	Open in IMG/M
3300034147\|Ga0364925_0232043	Not Available	684	Open in IMG/M

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	88.03%
Host-Associated	Host-Associated	9.40%
Engineered	Engineered	2.56%

Habitat	Taxonomy	Distribution
Aquatic	Environmental → Aquatic	47.01%
Terrestrial	Environmental → Terrestrial	41.03%
Plants	Host-Associated → Plants	9.40%
Wastewater	Engineered → Wastewater	1.71%
Bioremediation	Engineered → Bioremediation	0.85%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	39.32%
Freshwater	Environmental → Aquatic → Freshwater	35.04%
Marine	Environmental → Aquatic → Marine	7.69%
Rhizosphere	Host-Associated → Plants → Rhizosphere	5.13%
Sediment	Environmental → Aquatic → Sediment	4.27%
Rhizoplane	Host-Associated → Plants → Rhizoplane	2.56%
Roots	Host-Associated → Plants → Roots	1.71%
Deep Subsurface	Environmental → Terrestrial → Deep Subsurface	0.85%
Floodplain	Environmental → Terrestrial → Floodplain	0.85%
Activated Sludge	Engineered → Wastewater → Activated Sludge	0.85%
Industrial Wastewater	Engineered → Wastewater → Industrial Wastewater	0.85%
Metal	Engineered → Bioremediation → Metal	0.85%

Habitat	Taxonomy	Distribution
Wetlands	Environmental → Terrestrial → Soil → Wetlands	33.33%
Sediment	Environmental → Aquatic → Freshwater → Sediment	13.68%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	5.98%
Unclassified	Environmental → Terrestrial → Soil → Unclassified	5.98%
Lake	Environmental → Aquatic → Freshwater → Lake	5.13%
Wetlands	Environmental → Aquatic → Marine → Wetlands	5.13%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	5.13%
Lentic	Environmental → Aquatic → Freshwater → Lentic	4.27%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	4.27%
Groundwater	Environmental → Aquatic → Freshwater → Groundwater	2.56%
Pond	Environmental → Aquatic → Freshwater → Pond	2.56%
Sediment	Environmental → Aquatic → Marine → Sediment	2.56%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	1.71%
Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere	1.71%
Unclassified	Environmental → Aquatic → Freshwater → Unclassified	0.85%
Unclassified	Environmental → Terrestrial → Deep Subsurface → Unclassified	0.85%
Sediment	Environmental → Terrestrial → Floodplain → Sediment	0.85%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	0.85%
Unclassified	Engineered → Wastewater → Activated Sludge → Unclassified	0.85%
Unclassified	Engineered → Wastewater → Industrial Wastewater → Unclassified	0.85%
Unclassified	Engineered → Bioremediation → Metal → Unclassified	0.85%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	33.33%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	13.68%
Unclassified	Environmental → Aquatic → Freshwater → Wetlands → Unclassified	5.98%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	5.13%
Sediment	Environmental → Aquatic → Freshwater → Lentic → Sediment	4.27%
Sediment	Environmental → Aquatic → Freshwater → Lake → Sediment	4.27%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	4.27%
Unclassified	Environmental → Aquatic → Marine → Wetlands → Unclassified	3.42%
Unclassified	Environmental → Aquatic → Freshwater → Groundwater → Unclassified	2.56%
Sediment	Environmental → Aquatic → Freshwater → Pond → Sediment	2.56%
Unclassified	Environmental → Aquatic → Marine → Sediment → Unclassified	2.56%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	2.56%
Sediment	Environmental → Aquatic → Marine → Wetlands → Sediment	1.71%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	1.71%
Soil	Host-Associated → Plants → Roots → Rhizosphere → Soil	1.71%
Unclassified	Environmental → Aquatic → Freshwater → Lake → Unclassified	0.85%
Unclassified	Environmental → Aquatic → Freshwater → Unclassified → Unclassified	0.85%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	0.85%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	0.85%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	0.85%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	0.85%
Unclassified	Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified	0.85%
Unclassified	Environmental → Terrestrial → Floodplain → Sediment → Unclassified	0.85%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	0.85%
Unclassified	Engineered → Wastewater → Activated Sludge → Unclassified → Unclassified	0.85%
Unclassified	Engineered → Wastewater → Industrial Wastewater → Unclassified → Unclassified	0.85%
Unclassified	Engineered → Bioremediation → Metal → Unclassified → Unclassified	0.85%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	27.35%
Wetland	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Wetland	7.69%
Freshwater Wetlands	Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Freshwater Wetlands	5.98%
Natural And Restored Wetlands	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Natural And Restored Wetlands	5.13%
Freshwater Lake Sediment	Environmental → Aquatic → Freshwater → Lentic → Sediment → Freshwater Lake Sediment	4.27%
Sediment	Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment	4.27%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere	4.27%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Freshwater Sediment	3.42%
Natural And Restored Wetlands	Environmental → Aquatic → Marine → Wetlands → Unclassified → Natural And Restored Wetlands	3.42%
Groundwater	Environmental → Aquatic → Freshwater → Groundwater → Unclassified → Groundwater	2.56%
Freshwater	Environmental → Aquatic → Freshwater → Pond → Sediment → Freshwater	2.56%
Sediment	Environmental → Aquatic → Marine → Sediment → Unclassified → Sediment	2.56%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Freshwater Sediment	1.71%
Wetland	Environmental → Aquatic → Marine → Wetlands → Sediment → Wetland	1.71%
Sediment (Intertidal)	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Sediment (Intertidal)	1.71%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	1.71%
Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Sediment	0.85%
Freshwater	Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater	0.85%
Freshwater	Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater	0.85%
Soil	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Soil	0.85%
Lake Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Lake Sediment	0.85%
Mangrove Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Mangrove Sediment	0.85%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	0.85%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	0.85%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	0.85%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	0.85%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	0.85%
Untreated Peat Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Untreated Peat Soil	0.85%
Deep Subsurface	Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface	0.85%
Sediment	Environmental → Terrestrial → Floodplain → Sediment → Unclassified → Sediment	0.85%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	0.85%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Miscanthus Rhizosphere	0.85%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	0.85%
Miscanthus Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere → Soil → Miscanthus Rhizosphere	0.85%
Switchgrass Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere → Soil → Switchgrass Rhizosphere	0.85%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.85%
Activated Sludge	Engineered → Wastewater → Activated Sludge → Unclassified → Unclassified → Activated Sludge	0.85%
Sewage Treatment Plant	Engineered → Wastewater → Industrial Wastewater → Unclassified → Unclassified → Sewage Treatment Plant	0.85%
Sediment Slurry	Engineered → Bioremediation → Metal → Unclassified → Unclassified → Sediment Slurry	0.85%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000955	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
3300001213	Combined assembly of wetland microbial communities from Twitchell Island in the Sacramento Delta (Jan 2013 JGI Velvet Assembly)	Environmental	Open in IMG/M
3300002961	Wetland microbial communities from Twitchell Island in the Sacramento Delta, sample from surface sediment Feb2011 Site A1 Bulk	Environmental	Open in IMG/M
3300003858	Freshwater lake sediment microbial communities from the University of Notre Dame, USA, for methane emissions studies - DIP11 DI	Environmental	Open in IMG/M
3300003860	Freshwater lake sediment microbial communities from the University of Notre Dame, USA, for methane emissions studies - PLP11 PL	Environmental	Open in IMG/M
3300004050	Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - RushSE_CattailNLA_D2	Environmental	Open in IMG/M
3300004146	Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - RushSE_TuleB_D2	Environmental	Open in IMG/M
3300004151	Freshwater pond sediment microbial communities from the University of Edinburgh, under environmental carbon perturbations - High cellulose week 5	Environmental	Open in IMG/M
3300004155	Freshwater pond sediment microbial communities from the University of Edinburgh, under environmental carbon perturbations - Low cellulose week 11	Environmental	Open in IMG/M
3300004184	Freshwater sediment methanotrophic microbial communities from Lake Washington under simulated oxygen tension - Sediment Metagenome 1_LOW4	Environmental	Open in IMG/M
3300004282	Freshwater pond sediment microbial communities from the University of Edinburgh, under environmental carbon perturbations - Initial sediment	Environmental	Open in IMG/M
3300004481	Combined Assembly of Gp0112041, Gp0112042, Gp0112043	Environmental	Open in IMG/M
3300005293	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Bulk Soil Replicate 1 : eDNA_1	Host-Associated	Open in IMG/M
3300005827	Microbial communities from Cathlamet Bay sediment, Columbia River estuary, Oregon - S.188_CBA	Environmental	Open in IMG/M
3300005833	Microbial communities from Cathlamet Bay sediment, Columbia River estuary, Oregon - S.174_CBK	Environmental	Open in IMG/M
3300006237	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 (version 2)	Host-Associated	Open in IMG/M
3300009081	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P7 Core (1) Depth 19-21cm May2015	Environmental	Open in IMG/M
3300009085	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P7 Core (6) Depth 10-12cm September2015	Environmental	Open in IMG/M
3300009091	Freshwater wetland microbial communities from Ohio, USA, analyzing the effect of biotic and abiotic controls - Mud 3 Core 4 Depth 3 metaG (Illumina Assembly)	Environmental	Open in IMG/M
3300009111	Wetland microbial communities from Old Woman Creek Reserve in Ohio, USA - Mud_0915_D1	Environmental	Open in IMG/M
3300009120	Lake sediment microbial communities from Tanners Lake, St. Paul, MN	Environmental	Open in IMG/M
3300009153	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P8 Core (3) Depth 10-12cm March2015	Environmental	Open in IMG/M
3300009167	Freshwater wetland microbial communities from Ohio, USA, analyzing the effect of biotic and abiotic controls - Mud 3 Core 4 Depth 3 metaG - Illumina Assembly (version 2)	Environmental	Open in IMG/M
3300009170	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P7 Core (1) Depth 1-3cm May2015	Environmental	Open in IMG/M
3300009176	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG	Host-Associated	Open in IMG/M
3300009179	Wetland microbial communities from Old Woman Creek Reserve in Ohio, USA - Plant_0915_D1	Environmental	Open in IMG/M
3300009430	Groundwater microbial communities from Big Spring, Nevada to study Microbial Dark Matter (Phase II) - Ash Meadows Big Spring	Environmental	Open in IMG/M
3300009455	Groundwater microbial communities from Big Spring, Nevada to study Microbial Dark Matter (Phase II) - Ash Meadows Crystal Spring	Environmental	Open in IMG/M
3300009509	Mangrove sediment microbial communities from Mai Po Nature Reserve Marshes in Hong Kong, China - Maipo_11	Environmental	Open in IMG/M
3300009870	Activated sludge microbial diversity in wastewater treatment plant from Taiwan - Linkou plant	Engineered	Open in IMG/M
3300010399	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-3	Environmental	Open in IMG/M
3300011405	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMLT400_2	Environmental	Open in IMG/M
3300013136 (restricted)	Freshwater microbial communities from Kabuno Bay, South-Kivu, Congo ? kab_022012_11.5m	Environmental	Open in IMG/M
3300013833	Sewage treatment plant microbial communities from Vermont, USA - CLO_W	Engineered	Open in IMG/M
3300014266	Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - WestPond_TuleB_D1	Environmental	Open in IMG/M
3300014268	Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - MayberryNE_CattailA_D1	Environmental	Open in IMG/M
3300014295	Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - Joice_CattailNLB_D1	Environmental	Open in IMG/M
3300014305	Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - RushSE_TuleB_D1	Environmental	Open in IMG/M
3300014306	Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - RushSE_CattailNLB_D1	Environmental	Open in IMG/M
3300014322	Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - WestPond_CattailA_D1	Environmental	Open in IMG/M
3300014325	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG	Host-Associated	Open in IMG/M
3300015371	Combined assembly of cpr5 and col0 rhizosphere and soil	Host-Associated	Open in IMG/M
3300018469	Populus adjacent soil microbial communities from riparian zone of Weber River, Utah, USA - 320 T	Environmental	Open in IMG/M
3300022204	Sediment microbial communities from San Francisco Bay, California, United States - SF_Jul11_sed_USGS_8_1	Environmental	Open in IMG/M
3300022213	Sediment microbial communities from San Francisco Bay, California, United States - SF_Oct11_sed_USGS_4_1	Environmental	Open in IMG/M
3300022214	Sediment microbial communities from San Francisco Bay, California, United States - SF_Jan12_sed_USGS_4_1	Environmental	Open in IMG/M
3300024895	Freshwater sediment methanotrophic microbial communities from Lake Washington under simulated oxygen tension - Sediment Metagenome 1_LOW4 (SPAdes)	Environmental	Open in IMG/M
3300025958	Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - RushSE_TuleB_D2 (SPAdes)	Environmental	Open in IMG/M
3300025981	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026026	Wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - WestPond_CattailB_D2 (SPAdes)	Environmental	Open in IMG/M
3300027427	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-G08A2-11 (SPAdes)	Environmental	Open in IMG/M
3300027715	Deep subsurface shale carbon reservoir microbial communities from Ohio, USA - Methanogen_OWC (SPAdes)	Environmental	Open in IMG/M
3300027871	Wetland microbial communities from Old Woman Creek Reserve in Ohio, USA - Open_0915_D1 (SPAdes)	Environmental	Open in IMG/M
3300027877	Wetland microbial communities from Old Woman Creek Reserve in Ohio, USA - Mud_0915_D1 (SPAdes)	Environmental	Open in IMG/M
3300027885	Freshwater lake sediment microbial communities from the University of Notre Dame, USA, for methane emissions studies - LWP11 LW (SPAdes)	Environmental	Open in IMG/M
3300027890	Wetland microbial communities from Old Woman Creek Reserve in Ohio, USA - Plant_0915_D1 (SPAdes)	Environmental	Open in IMG/M
3300027897	Freshwater lake sediment microbial communities from the University of Notre Dame, USA, for methane emissions studies - DIP11 DI (SPAdes)	Environmental	Open in IMG/M
3300027899	Freshwater lake sediment microbial communities from the University of Notre Dame, USA, for methane emissions studies - PLP11 PL (SPAdes)	Environmental	Open in IMG/M
3300028889	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 12C_Control_Day2	Environmental	Open in IMG/M
3300031665	Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J5-7_050615r2r3	Host-Associated	Open in IMG/M
3300031740	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gases AM2C_05	Environmental	Open in IMG/M
3300031834	Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G12_0	Environmental	Open in IMG/M
3300031873	Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G15_0	Environmental	Open in IMG/M
3300031903	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-1	Host-Associated	Open in IMG/M
3300032002	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-3	Host-Associated	Open in IMG/M
3300032004	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-3	Host-Associated	Open in IMG/M
3300032092	Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 4 MA121	Environmental	Open in IMG/M
3300032126	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-2	Host-Associated	Open in IMG/M
3300032143	Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G13_0	Environmental	Open in IMG/M
3300032157	Garden soil microbial communities collected in Santa Monica, California, United States - V. faba soil	Environmental	Open in IMG/M
3300032256	Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - C3_top	Environmental	Open in IMG/M
3300032401	Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G03_0	Environmental	Open in IMG/M
3300033406	Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_soil_day20_CT	Environmental	Open in IMG/M
3300033408	Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_soil_day20_noCT	Environmental	Open in IMG/M
3300033413	Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_soil_day10_noCT	Environmental	Open in IMG/M
3300033414	Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_Aug_M1_C1_D4_B	Environmental	Open in IMG/M
3300033416	Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_Aug_OW2_C1_D5_C	Environmental	Open in IMG/M
3300033419	Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_soil_day5_noCT	Environmental	Open in IMG/M
3300033434	Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_soil_day10_CT_b	Environmental	Open in IMG/M
3300033481	Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_soil_day5_CT	Environmental	Open in IMG/M
3300033482	Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_Aug_M2_C1_D1_C	Environmental	Open in IMG/M
3300033483	Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_May_M1_C1_D1_A	Environmental	Open in IMG/M
3300033485	Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_Aug_T1_C1_D5_A	Environmental	Open in IMG/M
3300033487	Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_May_M1_C1_D6_A	Environmental	Open in IMG/M
3300033488	Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_Aug_OW2_C1_D1_C	Environmental	Open in IMG/M
3300033493	Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_May_M1_C1_D3_A	Environmental	Open in IMG/M
3300033521	Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_Aug_M1_C1_D1_B	Environmental	Open in IMG/M
3300034052	Uranium-contaminated sediment microbial communities from bioreactor in Oak Ridge, Tennessee, United States - A1A4.2	Engineered	Open in IMG/M
3300034128	Peat soil microbial communities from wetlands in Alaska, United States - Frozen_pond_06D_16	Environmental	Open in IMG/M
3300034147	Sediment microbial communities from East River floodplain, Colorado, United States - 44_j17	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Note: Some of these sequences are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI1027J12803_1084590042	3300000955	Soil	WQEVARALDVPPAKYARLLTLQDAVRDLARNWPVGTGSTV*
JGIcombinedJ13530_1084195982	3300001213	Wetland	WREAAEALEVPPAKFGRLLTLQDAVREAARNWPGAAQSTV*
JGI11641J44799_102272331	3300002961	Wetland	WDWREAAEALEVPPAKFGRLLTVQDALRDAARNWPLEPGPGV*
Ga0031656_100705684	3300003858	Freshwater Lake Sediment	AWDWREAATALEVPPAKFGRLLVLQDAVRSLARNWPGDGQSTV*
Ga0031658_10391773	3300003860	Freshwater Lake Sediment	ARRTDLEDWDWREAATALDVPPAKFGRLLTLQDAVRDAARNWPGPQQSTV*
Ga0055491_100893631	3300004050	Natural And Restored Wetlands	DRLRGAGRDELANWDWREAADALEVPPAKFGRLLTLQDAVRAVAGNWPGGAASTV*
Ga0055495_101980512	3300004146	Natural And Restored Wetlands	DGLAAWDWREAAEALEVPAAKFGRLLTVQDAVRDAARNWTVAPGSSV*
Ga0066602_102385011	3300004151	Freshwater	AQAVLGMDCGQLAAWDWQEAARVLDVPPAKFGRLLTLQDAIRAAARNWPGTTRSTV*
Ga0066600_106047101	3300004155	Freshwater	AASWLTDRLRGCDRHDFERWDWREAATALEVPAAKSGRLLVLQDAVHEAARNWPGRGRAPV*
Ga0066401_10064651	3300004184	Freshwater Sediment	CGQLAGWDWQEAARVLDVPPAKFGRLLTLQDALRAAVRNWPGTARSTV*
Ga0066599_1012444131	3300004282	Freshwater	DRHDFERWDWREAATALEVPAAKSGRLLVLQDAVHEAARNWPGRGRASV*
Ga0069718_100122721	3300004481	Sediment	AAETALGLDCGALAAWDWQEAARVLDVPTAKFGRLLTLQDAIRAAARNWPGTTGSTV*
Ga0065715_108087132	3300005293	Miscanthus Rhizosphere	ASWLTERLVGLDRSELDAWDWQEVARALEIPPAKYARLLTLQDAVRDLARNWPVGNGSTV
Ga0074478_14542661	3300005827	Sediment (Intertidal)	GRADLETWDWREAAEALEVPPAKFGRLLTLQDAVREAARNWPGAAQSTV*
Ga0074472_103313173	3300005833	Sediment (Intertidal)	LTDRLRGAGRSEVENWDWREAAEALGVPPAKSGRLLTLQDAVRDAARNWPGAGQSTV*
Ga0097621_1014783773	3300006237	Miscanthus Rhizosphere	AWDWQEVARALEIPPAKYARLLTLQDAVRDLARNWPVGNGSTV*
Ga0105098_107744412	3300009081	Freshwater Sediment	LAEVALGLDCDQLEAWDWQEVARALDVPPAKFGRLLTLQDAIRAVVRNWPGTTRSTV*
Ga0105103_108591392	3300009085	Freshwater Sediment	AEAAIGLDCDQLEAWDWQEVARALDVPPAKFGRLLTLQDAIRAVVRNWPGTTRSTV*
Ga0102851_115508882	3300009091	Freshwater Wetlands	PDQLLAWDWREAAEALDVPAAKFGRLLTLQDAVRALARNWPGPAASTV*
Ga0102851_116464233	3300009091	Freshwater Wetlands	EAATALEVPPAKFGRLLVLQDAVRNLAGNWPGASGSTV*
Ga0102851_122969671	3300009091	Freshwater Wetlands	EALEVPPVKFGRLLTLQDAVRAAARNWPGGTASTV*
Ga0102851_132539732	3300009091	Freshwater Wetlands	DLLKAWDWQEVARALDVPSAKFGRLLTLQDAIRAVVRNWPGTTRSTV*
Ga0115026_105323791	3300009111	Wetland	RADLEAWDWREAAEALEVPPAKFGRLLTLQDAVRAAARNWPGAAQSTV*
Ga0115026_112039372	3300009111	Wetland	AASWAAETALGLDCGALAAWDWQEAARVLDVPPAKFGRLLTLQDAIRASARNWPGTTRSTV*
Ga0117941_10145194	3300009120	Lake Sediment	AVREDLEAWDWREAAEALEVPPAKFGRLLTLQDAVREAARNWPGAAQSTV*
Ga0105094_102376011	3300009153	Freshwater Sediment	WDWREAADAVAVPPAKFGRLLTLQDAVRAVAGNWPGAAASTV*
Ga0113563_101573641	3300009167	Freshwater Wetlands	AGLEAWDWREAAERLEVPPAKFGRLITLQDAVRDAARNWNSETRSTV*
Ga0113563_115861973	3300009167	Freshwater Wetlands	DAATALDVPPAKFGRLLTLQDATRAAAGNWPGGGSSTV*
Ga0113563_134815481	3300009167	Freshwater Wetlands	AETALGLDCGALAAWDWQEAARVLDVPPAKFGRLLTLQDAIRAAARNWPGTTRSTV*
Ga0105096_101219924	3300009170	Freshwater Sediment	AWDWREAAEALQVPPAKFGRLLTLQDAARAAAGNWPGGGSSTV*
Ga0105242_106443173	3300009176	Miscanthus Rhizosphere	EWDWREAADALEIPPSRFGRLITLQDAARAAAAAWPGEIAAAV*
Ga0115028_106351523	3300009179	Wetland	GAGREDLQAWDWREAAEALAVPPAKFGRLLTLQDAVREAARNWPGAAGSTV*
Ga0115028_116922641	3300009179	Wetland	RAELEAWDWQEAAAALEVPPAKFGRLLTLQDALRDAARNWPGAPQSTV*
Ga0114938_10298114	3300009430	Groundwater	EALEVPPAKYGRLLILQDAVHGLARNWPGETGSTV*
Ga0114938_10392461	3300009430	Groundwater	ARRDEIADWDWREVAEALEVPAAKFGRLLTLQDAVRSVVRNWPGTPGSTV*
Ga0114939_103366342	3300009455	Groundwater	REAADALQVPPAKFGRLLTLQDAARAVAGNWPGGGSSTV*
Ga0123573_112202512	3300009509	Mangrove Sediment	RTDVAGWDWREAATELEVPPAKFGRLLVLQDAVRDAAGNWSGRAASTV*
Ga0131092_100520261	3300009870	Activated Sludge	WDWREAADALEVPPAKFARLLTVQDAVRDAARNWPVTPGSTV*
Ga0134127_125899602	3300010399	Terrestrial Soil	EAAEALEIPPARFGRLITLQDAVRAAAAAWPGTAATAV*
Ga0137340_11146202	3300011405	Soil	EAAEALDIPPARFGRLITLQDAARAAAAAWPGTAATAV*
(restricted) Ga0172370_104228402	3300013136	Freshwater	REDLAAWDWREVAEALAVPAGKFGRLLTLQDAVRAAAGNWPGSSGSTV*
Ga0119880_10089711	3300013833	Sewage Treatment Plant	DWREAAEALEVPAAKFGRLLTVQDAVRDAARNWRVARASTV*
Ga0075359_10251313	3300014266	Natural And Restored Wetlands	WDWREAADALEVPPAKFGRLLTVQDALRDAARNWPASRVSTV*
Ga0075309_12003332	3300014268	Natural And Restored Wetlands	LAGAVRADLLAWDWREAATALEVPAAKFGRLLTLQDAVRAVAGNWPGGAPSTV*
Ga0075305_10871042	3300014295	Natural And Restored Wetlands	LRGATRDGLAAWDWREAAEALEVPAAKFGRLLTVQDAVRDAARNWPTGAESTV*
Ga0075349_10516571	3300014305	Natural And Restored Wetlands	WDWREAADALEVPPVKFGRLLTLQDAVRAIARNWPGSTGSTV*
Ga0075346_10180993	3300014306	Natural And Restored Wetlands	VTDRLRGASRTELERWDWQELVTTLEVPPAKFGRLLTLQDAVRALARNWPGALRSTV*
Ga0075355_10388441	3300014322	Natural And Restored Wetlands	QLGSWDWREAADALEVPPAKFGRLLTVQDALRDAARNWPASRVSTV*
Ga0163163_127751611	3300014325	Switchgrass Rhizosphere	ASWDWKTVAEALQVPAAKFGRLLTLQDAVRAAARNWAVQTRSTV*
Ga0132258_101355158	3300015371	Arabidopsis Rhizosphere	RAEIEHWDWREAQAALDVPPAKFGRLLTLQDAARDAARNWPSATAV*
Ga0190270_128270241	3300018469	Soil	WDWREAAEALEIPPARFGRLITLQDAARAAAAAWPGTAATAV
Ga0224496_104192732	3300022204	Sediment	VTDRLRGASRTDLERWDWQELVTTLEVPPAKFGRLLTLQDAVRALARNWPGALRSTV
Ga0224500_102663482	3300022213	Sediment	LRDADRARLECWDWREAADVLEVPPVKFGRLLTLQDAVRALARNWPGRTGSTV
Ga0224505_101479363	3300022214	Sediment	EAAAALEVPAAKFGRLLTLQDAVRNAAGNWSGSTASTV
Ga0208508_10143991	3300024895	Freshwater Sediment	CGQLAGWDWQEAARVLDVPPAKFGRLLTLQDALRAAVRNWPGTARSTV
Ga0210069_10349201	3300025958	Natural And Restored Wetlands	AADALEVPPAKFGRLLTLQDAVRAVAGNWPGGAASTV
Ga0207640_117399131	3300025981	Corn Rhizosphere	WQEVARALEIPPAKYARLLTLQDAVRDLARNWPVGNGSTV
Ga0210129_11024711	3300026026	Natural And Restored Wetlands	LVAAASWVTDRLRGATRDDLAAWDWREAADALEVPPAKFGRLLTVQDALRDAARNWPASPVSTV
Ga0207472_1041162	3300027427	Soil	DALEIPPSRFGRLITLQDAARAAAAAWPGEIAAAV
Ga0208665_100245974	3300027715	Deep Subsurface	REAATALDVPPAKFGRLLTLQDAVRDAARNWPGPQQSTV
Ga0209397_100387594	3300027871	Wetland	LAGASWLTERLLGARRTDLEDWDWREAATALDVPPAKFGRLLTLQDAVRDAARNWPGPQQSTV
Ga0209397_101597843	3300027871	Wetland	AGRGDLEAWDWREAADALGVPPAKFGRLLTLQDAVREAARNWPGAAGSTV
Ga0209293_106726012	3300027877	Wetland	GCPHFIASASWITERLRGADRAGLEGWDWRDAAEALEVPPAKFGRLITLQDAVRDAARNWRGETRSTV
Ga0209450_100375045	3300027885	Freshwater Lake Sediment	REAATALEVPPAKFGRLLVLQDAVRTLAGNWPGENGSTV
Ga0209496_101605871	3300027890	Wetland	TGQLVGASRGDLERWDWREAATALEVPPAKFGRLLTVQDAVRDAAGNWPGRAASTV
Ga0209496_105073262	3300027890	Wetland	DLEAWDWREAAEALEVPPAKFGRLLTLQDAVRVAARNWPGAAQSTV
Ga0209254_105490271	3300027897	Freshwater Lake Sediment	SWLTEAIRGCDRTQLAAWDWHEAAAALEVPPAKFGRLLTVQDALRAAVRNWPGAPESTV
Ga0209668_100102417	3300027899	Freshwater Lake Sediment	DRLRGAGRSEVENWDWREAAEALEVPPAKSGRLLTLQDAVRDAARNWPGAGQSTV
Ga0247827_111586642	3300028889	Soil	TEHVRGWSREQLAGWDWHEAARELEVPPAKFGRLLTLQDAVRDAARNWAGETGSTV
Ga0316575_101164861	3300031665	Rhizosphere	EAAEALEVPPHKYGRLLVLQDALLDAAGNWAGVTRSTV
Ga0307468_1017995061	3300031740	Hardwood Forest Soil	EWDWREAAEALEIPPARFGRLITLQDAVRAAAAAWTGTAATAV
Ga0315290_105070023	3300031834	Sediment	TDRLAGATRDELAAWDWRDAAEALDVPPAKFGRLLTLQDAVRAAAENWPGEGGSAV
Ga0315297_106800413	3300031873	Sediment	GAERADLKAWDWREAAGALEVPPAKFGRLLTLQDAVREAARNWPGSAESTV
Ga0307407_110217163	3300031903	Rhizosphere	DLEAWDWQEAARALEIPPAKFGRLLTLQDAVRATARNWASEAGSTV
Ga0307416_1015196293	3300032002	Rhizosphere	AWDWQEVAQALEVPPARFGRLLTLQDAVRQAARNWPGAPQSTV
Ga0307414_110304553	3300032004	Rhizosphere	REQMAAWDWQEVAQALEVPPARFGRLLTLQDAVRQAARNWPGAPQSTV
Ga0315905_110512181	3300032092	Freshwater	ASASWLTDRLRGAGRADLEAWDWREAAEALEVPPAKFGRLLTLQDAVHEAARNWPGAAQSTV
Ga0307415_1022056391	3300032126	Rhizosphere	RGWNREQMAAWDWQEVAQALEVPPARFGRLLTLQDAVRQAARNWPGAPQSTV
Ga0315292_112473642	3300032143	Sediment	TDRLRGAGRADLEAWDWREAAAALEVPPAKFGRLLTLQDAVREAARNWPGAAESTV
Ga0315912_113872172	3300032157	Soil	RVEGFDAGQLDAWEWQETARVLDIPPAKFGRLLTLQDAIRAAARNWPGATVSTV
Ga0315271_109796083	3300032256	Sediment	EALEVPPAKFGRLLTLQDAVREVARNWPGAAQSTV
Ga0315275_107074413	3300032401	Sediment	LEAWDWREAAEALEVPPAKFGRLLTLQDAVREAARNWPGAAESTV
Ga0316604_100465174	3300033406	Soil	AATALEVPPAKFGRLLTLQDALREAVRNWPGTAGSTV
Ga0316605_105047513	3300033408	Soil	ATALEVPPAKFGRLLVLQDAVRILGRNWPGAGQSTV
Ga0316605_105229621	3300033408	Soil	ASWLTDRLRGAARADFEGWDWREAATALEVPPAKFGRLLVLQDAVRTLAGNWPGGNGSTV
Ga0316605_107224873	3300033408	Soil	EAADALAIPPAKFGRLLTLQDAVRAMAGNWPGAAASTV
Ga0316603_108823203	3300033413	Soil	TERLRGSDRAGLEAWDWREAAERLEVPPAKFGRLITLQDAVRDAARNWNSETRSTV
Ga0316603_116938682	3300033413	Soil	ETACGLDRNQLASWEWQEVARLLDVPPAKFGRLLTLQDAIRAVVRNWPGATESTV
Ga0316603_122180561	3300033413	Soil	SWLTGRLAGATREELLAWDWREAAEALQVPPAKFGRLLTLQDATRAAAGNWPGGGSSTV
Ga0316619_116603712	3300033414	Soil	EAWDWREAADALAVPPAKFGRLLTLQDAVREAARNWPGAAGSTV
Ga0316622_1003382801	3300033416	Soil	LADAALGMDCGQLAAWDWQEAARVLEVPPAKFGRLLTLQDALRSVVQNWPGAARSTV
Ga0316622_1004994641	3300033416	Soil	EAATALDVPPAKFGRLLTLQDAVRDAARNWPGPQQSTV
Ga0316622_1016105153	3300033416	Soil	EEIADWDWREAAEALEVPAAKFGRLLTLQDAVRSVVRNWPGTLGSTV
Ga0316622_1027987141	3300033416	Soil	WLTDRLRGAGRADLEAWDWREAAEALEVPPAKFGRLLTLQDAVRAAARNWPGAAQSTV
Ga0316601_1000662291	3300033419	Soil	WREAAEALEVPPAKFGRLLTLQDAVRVAARNWPGAAQSTV
Ga0316601_1011592412	3300033419	Soil	WLTDRLRGAARADFEGWDWREAATALEVPPAKFGRLLVLQDAVRTLAGNWPGGNGSTV
Ga0316601_1016949172	3300033419	Soil	ETWDWREAAEALDVPPAKFGRLLTLQDAVRDVARNWPGTAGSTV
Ga0316613_103930051	3300033434	Soil	GAGRADLEAWDWREAAEALEVPPAKFGRLLTLQDAVREAARNWPGAAQSTV
Ga0316613_109537302	3300033434	Soil	AAALEVPPAKFGRLLTLQDALRDAARNWPGAPQSTV
Ga0316600_104794781	3300033481	Soil	VASASWLTDRLRGAGRADLEAWDWREAAEALEVPPAKFGRLLTLQDAVRAAARNWPGAAQSTV
Ga0316600_110228232	3300033481	Soil	DLGQWDWREAAAALEVPPAKFGRLLTLQDAVRDAAGNWRGGAASTV
Ga0316627_1013499441	3300033482	Soil	HLAGTSRDDLGQWDWREAAAALEVPPAKFGRLLTLQDAVRDAAGNWPGGAASTV
Ga0316627_1025218251	3300033482	Soil	GLDREALLAWDWREAATALEVPPAKFGRLLVLQDAVRILGRNWPGAGQSTV
Ga0316627_1027570941	3300033482	Soil	ATALEVPPAKFGRLLVLQDAVRTLAGNWPGGNGSTV
Ga0316629_107909871	3300033483	Soil	EIADWDWREAAEALEVPAAKFGRLLTLQDAVRSVVRNWPGTPGSTV
Ga0316626_108213713	3300033485	Soil	TDSLRGAGPDQLLAWDWREAAEALDVPAAKFGRLLTLQDAVRALARNWPGPAASTV
Ga0316626_121164142	3300033485	Soil	AETALGMDCGQLAAWDWQEAARVLEVPPAKFGRLLTLQDALRSVVQNWPGAARSTV
Ga0316630_112404041	3300033487	Soil	AASWLTDRLRGSARADFEGWDWREAATALEVPPAKFGRLLVLQDAVRALAGNWPGGNGST
Ga0316630_112726572	3300033487	Soil	EAATALEVPPAKFGRLLVLQDAVRILGRNWPGAGQSTV
Ga0316621_101006101	3300033488	Soil	PGLERAEVAAWDWQAAATALEVPPAKFGRLLTLQDALREAVRNWPGTAGSTV
Ga0316621_103816473	3300033488	Soil	GALLAWDWREAATALEVPPAKFGRLLVLQDAVRILGRNWPGAGQSTV
Ga0316631_101230433	3300033493	Soil	ASWLTDRLRGLDREALLAWDWREAATALEVPPAKFGRLLVLQDAVRILGRNWPGAGQSTV
Ga0316616_1029306382	3300033521	Soil	WREAADALEVPPAKFGRLLTLQDAVRSAAGNWPGGAASTV
Ga0316616_1040661442	3300033521	Soil	DALAVPPAKFGRLLTLQDAVREAARNWPGAAGSTV
Ga0373889_074265_417_551	3300034052	Sediment Slurry	EAWDWREAASALEVPAAKFGRLLTLQDALRAVAGNWPGAGSSTV
Ga0370490_0028030_1693_1872	3300034128	Untreated Peat Soil	SWVTEAGRGLNRSQLAGWDWQEAARVLDVPAAKFGRLLTLQDAIRAVARNWPGATESTV
Ga0364925_0232043_545_682	3300034147	Sediment	VAEWDWREAAEALDIPPARFGRLITLQDAARAAAAAWPGTAATAV

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.55
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.55
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NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters