Sample 3300013118

Basic Information
IMG/M Taxon OID	3300013118 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0118094 \| Gp0137046 \| Ga0171656
Sample Name	Marine water column microbial communities of the permanently stratified Cariaco Basin, Venezuela, May cruise - 314m, 250-2.7um, replicate b
Sequencing Status	Permanent Draft
Sequencing Center	Georgia Genomics Facility
Published?	N
Use Policy	Open

Basic Information

IMG/M Taxon OID

GOLD Reference
(Study | Sequencing Project | Analysis Project)

Sample Name

Marine water column microbial communities of the permanently stratified Cariaco Basin, Venezuela, May cruise - 314m, 250-2.7um, replicate b

Sequencing Status

Permanent Draft

Sequencing Center

Georgia Genomics Facility

Published?

Use Policy

Open

Dataset Contents
Total Genome Size	706928241
Sequencing Scaffolds	29
Novel Protein Genes	29
Associated Families	29

Dataset Contents

Total Genome Size

706928241

Sequencing Scaffolds

Novel Protein Genes

Associated Families

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	13
All Organisms → cellular organisms → Archaea → unclassified Archaea → archaeon	1
All Organisms → cellular organisms → Archaea → DPANN group → Candidatus Woesearchaeota → Candidatus Woesearchaeota archaeon	1
All Organisms → cellular organisms → Archaea → DPANN group → Candidatus Pacearchaeota → Candidatus Pacearchaeota archaeon	1
All Organisms → Viruses → Predicted Viral	5
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	2
All Organisms → cellular organisms → Bacteria	2
All Organisms → Viruses → environmental samples → uncultured Mediterranean phage	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium	1
All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon	1
All Organisms → cellular organisms → Bacteria → Proteobacteria	1

Dataset Phylogeny

Taxonomy Groups

Number of Scaffolds

Not Available

All Organisms → cellular organisms → Archaea → unclassified Archaea → archaeon

All Organisms → cellular organisms → Archaea → DPANN group → Candidatus Woesearchaeota → Candidatus Woesearchaeota archaeon

All Organisms → cellular organisms → Archaea → DPANN group → Candidatus Pacearchaeota → Candidatus Pacearchaeota archaeon

All Organisms → Viruses → Predicted Viral

All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium

All Organisms → cellular organisms → Bacteria

All Organisms → Viruses → environmental samples → uncultured Mediterranean phage

All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium

All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon

All Organisms → cellular organisms → Bacteria → Proteobacteria

Ecosystem Assignment (GOLD)
Name	Marine Water Column Microbial Communities Of The Permanently Stratified Cariaco Basin, Venezuela
Type	Environmental
Taxonomy	Environmental → Aquatic → Marine → Coastal → Unclassified → Marine → Marine Water Column Microbial Communities Of The Permanently Stratified Cariaco Basin, Venezuela

Ecosystem Assignment (GOLD)

Name

Marine Water Column Microbial Communities Of The Permanently Stratified Cariaco Basin, Venezuela

Type

Environmental

Taxonomy

Environmental → Aquatic → Marine → Coastal → Unclassified → Marine → Marine Water Column Microbial Communities Of The Permanently Stratified Cariaco Basin, Venezuela

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	marine biome → coastal water body → coastal sea water
Earth Microbiome Project Ontology (EMPO)	Free-living → Saline → Water (saline)

Alternative Ecosystem Assignments

Environment Ontology (ENVO)

marine biome → coastal water body → coastal sea water

Earth Microbiome Project Ontology (EMPO)

Free-living → Saline → Water (saline)

Location Information
Location	Cariaco Basin, Venezuela
Coordinates	Lat. (^o)	10.5	Long. (^o)	-64.66	Alt. (m)	N/A	Depth (m)	314
Location on Map

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Location Information

Location

Cariaco Basin, Venezuela

Coordinates

Lat. (^o)

10.5

Long. (^o)

-64.66

Alt. (m)

N/A

Depth (m)

314

Location on Map

Zoom:

Family	Category	Number of Sequences	3D Structure?
F021240	Metagenome	219	Y
F022100	Metagenome / Metatranscriptome	216	Y
F022751	Metagenome	213	Y
F024001	Metagenome / Metatranscriptome	208	Y
F029900	Metagenome / Metatranscriptome	187	Y
F033867	Metagenome	176	Y
F037424	Metagenome	168	Y
F037729	Metagenome / Metatranscriptome	167	Y
F042024	Metagenome / Metatranscriptome	159	Y
F046981	Metagenome / Metatranscriptome	150	Y
F046993	Metagenome	150	N
F050059	Metagenome / Metatranscriptome	145	Y
F056917	Metagenome / Metatranscriptome	137	Y
F064790	Metagenome	128	Y
F072238	Metagenome	121	N
F072364	Metagenome / Metatranscriptome	121	N
F072429	Metagenome	121	Y
F073653	Metagenome	120	N
F074743	Metagenome / Metatranscriptome	119	Y
F077181	Metagenome	117	N
F080045	Metagenome / Metatranscriptome	115	N
F083739	Metagenome	112	Y
F091874	Metagenome	107	Y
F094922	Metagenome / Metatranscriptome	105	Y
F098203	Metagenome / Metatranscriptome	104	Y
F099327	Metagenome	103	Y
F100949	Metagenome	102	N
F101859	Metagenome	102	Y
F103071	Metagenome	101	N

Family

Scaffold	Taxonomy	Length	IMG/M Link
Ga0171656_1013824	Not Available	8058	Open in IMG/M
Ga0171656_1019272	All Organisms → cellular organisms → Archaea → unclassified Archaea → archaeon	5970	Open in IMG/M
Ga0171656_1025877	All Organisms → cellular organisms → Archaea → DPANN group → Candidatus Woesearchaeota → Candidatus Woesearchaeota archaeon	4540	Open in IMG/M
Ga0171656_1042595	All Organisms → cellular organisms → Archaea → DPANN group → Candidatus Pacearchaeota → Candidatus Pacearchaeota archaeon	2900	Open in IMG/M
Ga0171656_1048398	Not Available	2602	Open in IMG/M
Ga0171656_1049734	All Organisms → Viruses → Predicted Viral	2541	Open in IMG/M
Ga0171656_1050409	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	2513	Open in IMG/M
Ga0171656_1052392	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	2427	Open in IMG/M
Ga0171656_1065213	All Organisms → cellular organisms → Bacteria	2016	Open in IMG/M
Ga0171656_1066605	All Organisms → Viruses → Predicted Viral	1982	Open in IMG/M
Ga0171656_1077752	All Organisms → Viruses → Predicted Viral	1740	Open in IMG/M
Ga0171656_1092101	Not Available	1515	Open in IMG/M
Ga0171656_1119424	Not Available	1225	Open in IMG/M
Ga0171656_1121964	All Organisms → Viruses → Predicted Viral	1206	Open in IMG/M
Ga0171656_1146060	All Organisms → Viruses → Predicted Viral	1055	Open in IMG/M
Ga0171656_1154664	Not Available	1012	Open in IMG/M
Ga0171656_1155532	All Organisms → Viruses → environmental samples → uncultured Mediterranean phage	1007	Open in IMG/M
Ga0171656_1171737	All Organisms → cellular organisms → Bacteria	935	Open in IMG/M
Ga0171656_1172731	Not Available	931	Open in IMG/M
Ga0171656_1181334	Not Available	897	Open in IMG/M
Ga0171656_1191227	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium	859	Open in IMG/M
Ga0171656_1194491	Not Available	847	Open in IMG/M
Ga0171656_1205484	Not Available	808	Open in IMG/M
Ga0171656_1208914	All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon	796	Open in IMG/M
Ga0171656_1212146	Not Available	785	Open in IMG/M
Ga0171656_1221758	Not Available	752	Open in IMG/M
Ga0171656_1240091	All Organisms → cellular organisms → Bacteria → Proteobacteria	683	Open in IMG/M
Ga0171656_1246317	Not Available	656	Open in IMG/M
Ga0171656_1246877	Not Available	653	Open in IMG/M

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0171656_1013824	Ga0171656_101382414	F064790	SVRKILDWAIQNKDKLDETIFLLGLSGPERYELWDEVRGCYAGGCYDEDRPNDEPGSADSVHLLSGRTETLMAKYHYNTLRDYDRTFRNVIYLMGVLDSLNCKYLIFDCISWTRPNLPSREDYVGEDISWKYDDYIEILQYVIDNPLYQEILTHKNFYSKQCWAEFCSPRGKGLFAAEDERMEQDPDKFPDWGHPNEKSNQLWFEILTNCAEENTLW*
Ga0171656_1019272	Ga0171656_10192728	F100949	GWPRDEDWMNDFPHLNHGKMRRRGTVCPCVYEKYNEVTNRAIVNYISELLESDISIPLSIIDVGGVISMIDGVHTALAYHKLGISEVPVYINSKSLPFGVCYKDYVIDKNGNKIKINLVSGYYESK*
Ga0171656_1025877	Ga0171656_10258771	F101859	MKWINTKVEFTWDSKKQKYVETDVQGYHYEGEIAQCGGGPESFGSGELVSISGSLEGIPHVSMSVGDVVLSANITGLPDTDVASEYLLWDYTGSAGISSQVTLATSSVESITTHSRAPSDGGMFSL
Ga0171656_1042595	Ga0171656_10425955	F077181	MMEIEIIKDIKISGEPFEAGSLVDLTPQIAEKLIRRGFAVLPDQKPKTKKSKGKKWHHIQESTESSNTTATQ*
Ga0171656_1048398	Ga0171656_10483981	F029900	LTMKKTIRLLLVLMVSLLSAQTATIKNSIIGYTTIGDIVSFDKPHLWTFIKSDDSKWMASICVDAPWADEVVYVEELFYKPFGDIRFGKDSDKFIIGLGRQAIPFGSNVPYLDLSRGDKFTYQTYTEHDVGLLYFGDGVSLYGGVGKWFLETYYGSDIENGYEGLTTVRLSYEVGDVHFVGVSFDNQERQSLDVSGYSKYVDYVTEFREDYQWGRAIVKTGKYGLSLLVGFESDKEKTQGLYGVVWQYGEPNRFLSAELSGEGDVRVKLYYGFNLNIGKENE*
Ga0171656_1049734	Ga0171656_10497341	F046993	DKLKQRWKDITIVLALPMMIVNTALDYYNGWESRTESRLEDYRLRWFILAHEHDEDGEVDWGDLREKGYGDMIPSPTDSFTPEVKVDSFLSKIFQPIKNQVDRFSNWWRELFKEEMIKDIRG*
Ga0171656_1050409	Ga0171656_10504095	F074743	MIDLANPEKRGRLLKAIKNSREALEKHRRVRKLMVEHYCGSWYDTTTPQDDGKILVNLMNQTARIYTVVLAANNPQVLVSTPRTETLPFARRFEVNLNKLISDMCLDKTFRSIVLDAFFCLGCGVVMMRDTDTRFHGLLESEEDVWLDPGEPWLNRVSLDDLIVDMPAKELSKMRYCGHRYRADYEKVMDEPGYNKKVKDKLTPTSREAHDGAGAAREIGTGSAEDDDLKEMVWLQDVWIAEN
Ga0171656_1052392	Ga0171656_10523924	F046981	MALGIEQIDDFVAGIHQKFAGEDRLAAQDISLPLQEYKYASRLFSGNLKKDTMSTSQCKWKVKVDTNDNFQVVGLYHKDTTGRVNVLSEGELKWGLTTNNYHYDIDEEIFQTGGRQIYDYLESLESDLMTSFYTGMEDVIFGAGPAASTTSPFPPVSLLWWITATDDSTSENNSEEGFDGFEPVGWSSAGVGGISCTTYKQWRNRTFPYTNVERDDFVEKTINSMDLCQFQPPVQRPDIVDQTRHDWELLTTHSRVAAGRRLLQLGNDN
Ga0171656_1065213	Ga0171656_10652133	F021240	MLDFNNSKSRIIIVDQEDRALLRSTPSDWSMPEDGQEHVFAHMLLPSRSSFGYKAKNLLSWCEAPIRVKQAKHISPVRHMSGNSIRFLILQTI
Ga0171656_1066605	Ga0171656_10666053	F056917	MESIYTIDTAKLNKSEIDIVQFIESWLPTFDRWSVKELSYKCRLSEPDGNAAADMLILHGLIENAPDDHVMGRQVSVTADGALWMRENMETINSLKLMLDTDIYDTTEIAES*
Ga0171656_1077752	Ga0171656_10777521	F072238	MFNIGVKSYDIREFFDESFVKEYKEVVIEYRNILDTNLPTTTNTGNSTKSLELIKWIEERTNKDFSYLYEPVWIYDGQKEYRYDYKFVMAAYEYLDSINIDENWNLVSQLSKDLIPNFSSLSLMYSPPESKTHKYYFMTDKINEVCLKKVIEEFPYMCNSLDDIQWNTNEWIGHMIAMPKGAFMSFHRDNTDDRPFTLLNYLNIDRTREDGGCFRYFIHKDYDVEDKESLDWSKYPDYLYYESVPQEDVENVKSLRYKYHNPPNKTPEYLESIDKFKNYNKYDIVANYTTVNILLHKNHKTKEEDKKYFVLETPPSSDYTGEQGIPHLVTKNKSDEVRYTLYRRVVWKEYLNELSRSVVWKDIREIK*
Ga0171656_1092101	Ga0171656_10921011	F103071	VGTIKREKNRLFNLEKSAEAIGRPIQLTEEQKADSGPIDFAEWRNLKMKEDALISQTERRVIQGDLLDRDAVMKEIGAAFHSAKTKLLTIPTSVAGIVATETDASVIKEIIEGLIREALAEIGTAGARFGSPIDNETTAEAHG*
Ga0171656_1119424	Ga0171656_11194243	F083739	VSDKQKQPLTDDIINSLKEKFKGYPLFQITDGLTGDTFIIRGSNWDEFARIGNVQPGKENRVPLNMVKAYVVYPEIDQQDIEYNKSGDWQPGRIVALAEQIQEVLGYNKAF
Ga0171656_1121964	Ga0171656_11219642	F080045	MANKLPKNPNIARKVREGIKGGVSVRQIFASVLHMKNAPQSYTTFYKLYREDMDEVKFTLDAKVGKTVIDQALDGDFKSQELYLRSRAGWSPSSHVQEQEVGTEEEENEGAVNALMAALGKETDDE*
Ga0171656_1146060	Ga0171656_11460604	F094922	MDERSCAEMETILKVHRQRIDDLEKTLSNINTQLIQIKACVYGAVGYAVATQLGILEALKLG
Ga0171656_1154664	Ga0171656_11546642	F022100	LLRWSEELRHLQLDEIGDRYSRYRLYLPEAERAMVHSLSRYGQISPVV
Ga0171656_1155532	Ga0171656_11555321	F072364	ADGISGNSIKMFLDGVPVLALQNFNWKIKKGKKPLFGAGFKTAHGVTRSAHKTYEIDFEIKEILFNSAINVAQTTKNAAILALFEDFTDIRNAVIIIMYPGAAAVRSKTFTGVEITDQEGGFSDSEDAEPIGIKCSGFATRATGLF*
Ga0171656_1171737	Ga0171656_11717371	F050059	RGTALWESLVGKPRGKDTRENHRCFDPRGGLRDTAATALEESASACPHSRRGLTPLGRLQKYPKIHVSTGEESSGSGPEFTQGLRPRHQRERNSERPPRNSHGDWPFLRPPERVPEGPVVSREHLPQLEKIQEVLPSRRDEAHFR*
Ga0171656_1172731	Ga0171656_11727313	F099327	ISLLVDGIKIMALQNLSWKASQAKSVIRGAGYRKPHAMGRGPKEYELDFEVKELNKAIIEEAINSPRSSEVQIKTFKVGEQEFSDLLDLRNATVLIMYPAKNNAQRIIRFLGFEFTDVEGGFSVDDESIGRKLSGLAMDAEGLV*
Ga0171656_1181334	Ga0171656_11813341	F091874	TMNHTDGRNHKMKITRRQLRRIIREEKRKILREGQTQEEDLFKALDQYVMVLDEEMGYDVPRDELKAEVLNFVDGYFEQTEEPPGGWDEADQEYITLRTPDGRPIE*
Ga0171656_1191227	Ga0171656_11912271	F037424	PPTGENIMSWNGSVTCSNCYSTGHNKRKCPRLTAQLKEKWERQSEAAERYRTMTDEECANESSTAREWNIDYHEKMAQQARVEYMKRTKIDLATGEKVTNKAAKAERMKNVTCGYCRDSGHTRRICEVVKRDKLVFIEESRRVRAGALADARETGIGVGSMIPIRSHGYNAAEEWGTHTTLRYVKRVDWHTVTAARAGLWVYHVDARKLAAANQHRWTSRDKILKMEENFKEARDYAELTHEPTPTASLIPSLDPPDGWLDCEPSTIDVAKQFPTTGGKYDKQRK
Ga0171656_1194491	Ga0171656_11944911	F022751	MISFIIPFSTIEKDKFLNLNEGFEYSDSANVVYATIKTIKNINTLKCEKEILLVDNSHTWPEMELPNVRVVKGWQALPLKELEKIPEFMNHRDIQLSLDNLGNDTMWASIAFHLGTQEAKGEYVVLQHNDTFYHQDCIDEMIDQLEKEKLEYISVDNKKIWISTYLLNKEFLDKYIQEYSQQPVIMRPENGGYVKTKKLGFADAYF
Ga0171656_1205484	Ga0171656_12054843	F033867	VNTGRIGLGNMEYMEQYGIHIQTATRVIADYIASEDKMIAEGKMPTVNHLYAFLDRMADTFHDAHKDVMKRIGIKDLIKEDFLYLEDKDDNT*
Ga0171656_1208914	Ga0171656_12089141	F098203	MKIAFIGPDMTGKSNIAAELSRQTGIPVFKNSGEWKTQLDSPDYFLNLLRYGGPFLMDFMHQTDASVILDRFYPCELVYASAFERSTDLDAITWMDDKFAEVNGKFILCLRKDYSGLVDDQYPDQLPPEMLKVLDKHYRTFYETTTCECLILETDDMDLNKQVKKIKMFLGI
Ga0171656_1212146	Ga0171656_12121461	F072429	MDNIKYLYSNGCSYTEGYGLDNPEKERYSKFLANKFTAEDINQSAGGGSNQRIFRTTYNWISQNQDKLKDTLFVIQLSYPVRNEIWVNRTWRDEYGNTSHWFGAQFGHDGYTAWEHHERDTSVDKDEINFSYVPDNKTCSEITWRYVISLQSFFKSNNIKYIFFEGDIHKHGFLDKTCKITELVDFDCFYDEGFLQSAGNRRT
Ga0171656_1221758	Ga0171656_12217581	F024001	KFAILGVEAPGRQGAKTLAYLDILSFRNAAGWDASASKM*
Ga0171656_1240091	Ga0171656_12400911	F037729	MNQEDFKRRISRLEESHESLEDSLNKLNTTIALLNQTVETMAKREEKRQQFMDRTVLFIVGGIISAFIAWVVRGG
Ga0171656_1246317	Ga0171656_12463172	F042024	MLTTTGIVIMTAYTVGMLYSVVYDKTRRPIQRVGKILLSIGEGILLYQASIWFLIISLSMIALSILSIYASPAAKEYLRWELARIAAAGGKPMSVNGAVALAAGATTAGVLGLYGVMATW
Ga0171656_1246877	Ga0171656_12468772	F073653	ISQKIIESLRNVAHENGKMTSPTAGVDTQGKSKKGKSYEGFTFGISARMDGEVRVFGKNFILLNWQSGRHWDNQVCRSLIEAQEWFRSETWAGNDEEEVF*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

3300013118: Marine water column microbial communities of the permanently stratified Cariaco Basin, Venezuela, May cruise - 314m, 250-2.7um, replicate b

Overview

Ecosystem and Geography

Associated Families

Associated Scaffolds

Sequences