NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Metagenome / Metatranscriptome Family F094922

Metagenome / Metatranscriptome Family F094922

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
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Overview

Basic Information
Family ID F094922
Family Type Metagenome / Metatranscriptome
Number of Sequences 105
Average Sequence Length 61 residues
Representative Sequence MDERRCSEMETILKVHRQRIDDLEKTLTNINTQLVQIKACAYGAVGYAVATQLGILEAIKL
Number of Associated Samples 51
Number of Associated Scaffolds 105

Quality Assessment
Transcriptomic Evidence Yes
Most common taxonomic group Unclassified
% of genes with valid RBS motifs 84.76 %
% of genes near scaffold ends (potentially truncated) 23.81 %
% of genes from short scaffolds (< 2000 bps) 71.43 %
Associated GOLD sequencing projects 45
AlphaFold2 3D model prediction Yes
3D model pTM-score0.49

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
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Most Common Taxonomy
Group Unclassified (56.190 % of family members)
NCBI Taxonomy ID N/A
Taxonomy N/A

Most Common Ecosystem
GOLD Ecosystem Environmental → Aquatic → Marine → Unclassified → Unclassified → Methane Seep Mesocosm
(30.476 % of family members)
Environment Ontology (ENVO) Unclassified
(42.857 % of family members)
Earth Microbiome Project Ontology (EMPO) Free-living → Saline → Water (saline)
(71.429 % of family members)



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Multiple Sequence Alignments

Select alignment to view:      


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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Globular Signal Peptide: No Secondary Structure distribution: α-helix: 65.17%    β-sheet: 0.00%    Coil/Unstructured: 34.83%
Feature Viewer
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Predicted 3D Structure

Structure Viewer
Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  
pTM-score: 0.49
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.


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Gene Neighborhood

Neighboring Pfam domains

Pfam IDName % Frequency in 105 Family Scaffolds
PF07087DUF1353 27.62
PF01764Lipase_3 15.24
PF08291Peptidase_M15_3 5.71
PF16778Phage_tail_APC 1.90
PF12810Gly_rich 0.95
PF13884Peptidase_S74 0.95
PF09327DUF1983 0.95
PF13385Laminin_G_3 0.95
PF01583APS_kinase 0.95
PF13540RCC1_2 0.95
PF04820Trp_halogenase 0.95
PF05345He_PIG 0.95

Neighboring Clusters of Orthologous Genes (COGs)

COG IDNameFunctional Category % Frequency in 105 Family Scaffolds
COG0529Adenylylsulfate kinase or related kinaseInorganic ion transport and metabolism [P] 0.95
COG4733Phage-related protein, tail protein JMobilome: prophages, transposons [X] 0.95


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Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:
NameRankTaxonomyDistribution
UnclassifiedrootN/A56.19 %
All OrganismsrootAll Organisms43.81 %

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Associated Scaffolds


ScaffoldTaxonomyLengthIMG/M Link
2189573026|GS311G0146KB_1112079428515Not Available847Open in IMG/M
3300000256|LP_F_10_SI03_120DRAFT_1006330All Organisms → Viruses → Predicted Viral3729Open in IMG/M
3300000256|LP_F_10_SI03_120DRAFT_1015944Not Available1898Open in IMG/M
3300000257|LP_F_10_SI03_100DRAFT_1026129Not Available977Open in IMG/M
3300000264|LP_A_09_P04_500DRAFT_1001846All Organisms → Viruses → Predicted Viral3568Open in IMG/M
3300000264|LP_A_09_P04_500DRAFT_1035556Not Available596Open in IMG/M
3300000930|BpDRAFT_10051195All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales3295Open in IMG/M
3300001683|GBIDBA_10013345Not Available5428Open in IMG/M
3300001683|GBIDBA_10031656All Organisms → Viruses → Predicted Viral2233Open in IMG/M
3300001683|GBIDBA_10068641Not Available1230Open in IMG/M
3300001683|GBIDBA_10095433Not Available940Open in IMG/M
3300002242|KVWGV2_10836847Not Available724Open in IMG/M
3300002242|KVWGV2_10965993Not Available533Open in IMG/M
3300003153|Ga0052192_1230648Not Available564Open in IMG/M
3300003478|JGI26238J51125_1031687Not Available1171Open in IMG/M
3300003478|JGI26238J51125_1070781Not Available683Open in IMG/M
3300003500|JGI26242J51144_1033320Not Available898Open in IMG/M
3300004280|Ga0066606_10023217All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium2688Open in IMG/M
3300004280|Ga0066606_10094266All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium1135Open in IMG/M
3300004280|Ga0066606_10253232Not Available628Open in IMG/M
3300005838|Ga0008649_10059680All Organisms → Viruses → Predicted Viral1657Open in IMG/M
3300007758|Ga0105668_1111838Not Available654Open in IMG/M
3300008224|Ga0105350_10006366All Organisms → cellular organisms → Bacteria6411Open in IMG/M
3300008224|Ga0105350_10009996All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Methylococcales → Methylococcaceae → Methylomicrobium → Methylomicrobium agile4920Open in IMG/M
3300008224|Ga0105350_10010068All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales → Rhodobacteraceae → Aestuariivita → unclassified Aestuariivita → Aestuariivita sp.4900Open in IMG/M
3300008224|Ga0105350_10021214All Organisms → Viruses → Predicted Viral3137Open in IMG/M
3300008253|Ga0105349_10014191All Organisms → Viruses → Predicted Viral3370Open in IMG/M
3300008253|Ga0105349_10025306Not Available2512Open in IMG/M
3300008253|Ga0105349_10032041Not Available2221Open in IMG/M
3300008253|Ga0105349_10041158Not Available1949Open in IMG/M
3300008253|Ga0105349_10041426All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium1942Open in IMG/M
3300008253|Ga0105349_10092080All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage1270Open in IMG/M
3300008253|Ga0105349_10093035Not Available1263Open in IMG/M
3300008253|Ga0105349_10204058Not Available824Open in IMG/M
3300008253|Ga0105349_10241979Not Available751Open in IMG/M
3300008253|Ga0105349_10288910Not Available682Open in IMG/M
3300008253|Ga0105349_10312955Not Available653Open in IMG/M
3300008254|Ga0105351_1042002All Organisms → Viruses → Predicted Viral1676Open in IMG/M
3300008254|Ga0105351_1079933All Organisms → cellular organisms → Bacteria1135Open in IMG/M
3300008952|Ga0115651_1026857All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria4985Open in IMG/M
3300009106|Ga0117917_1003133Not Available12152Open in IMG/M
3300009375|Ga0118721_1041888Not Available2364Open in IMG/M
3300009378|Ga0118726_1047734All Organisms → Viruses → Predicted Viral1952Open in IMG/M
3300009378|Ga0118726_1143127Not Available922Open in IMG/M
3300009378|Ga0118726_1189785All Organisms → cellular organisms → Bacteria759Open in IMG/M
3300009481|Ga0114932_10163533Not Available1364Open in IMG/M
3300009702|Ga0114931_10709144Not Available604Open in IMG/M
3300009703|Ga0114933_10000701Not Available39592Open in IMG/M
3300009703|Ga0114933_10196719All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Alphaproteobacteria incertae sedis → SAR116 cluster → Candidatus Puniceispirillum → unclassified Candidatus Puniceispirillum → Candidatus Puniceispirillum sp. TMED521367Open in IMG/M
3300009703|Ga0114933_10210951Not Available1312Open in IMG/M
3300009703|Ga0114933_10210952All Organisms → Viruses → Predicted Viral1312Open in IMG/M
3300009703|Ga0114933_10743632Not Available627Open in IMG/M
3300009703|Ga0114933_11000367Not Available529Open in IMG/M
3300011013|Ga0114934_10525269Not Available523Open in IMG/M
3300013115|Ga0171651_1057050All Organisms → Viruses → Predicted Viral1238Open in IMG/M
3300013118|Ga0171656_1146060All Organisms → Viruses → Predicted Viral1055Open in IMG/M
(restricted) 3300022931|Ga0233433_10274386Not Available703Open in IMG/M
(restricted) 3300022931|Ga0233433_10291308Not Available674Open in IMG/M
(restricted) 3300022933|Ga0233427_10001534All Organisms → cellular organisms → Bacteria24438Open in IMG/M
(restricted) 3300022933|Ga0233427_10017279All Organisms → cellular organisms → Bacteria4601Open in IMG/M
(restricted) 3300022933|Ga0233427_10089115Not Available1507Open in IMG/M
(restricted) 3300024243|Ga0233436_1045404All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium1706Open in IMG/M
(restricted) 3300024261|Ga0233439_10052821All Organisms → cellular organisms → Bacteria2322Open in IMG/M
(restricted) 3300024261|Ga0233439_10145906All Organisms → Viruses → Predicted Viral1141Open in IMG/M
(restricted) 3300024261|Ga0233439_10161360Not Available1063Open in IMG/M
3300024344|Ga0209992_10392519Not Available549Open in IMG/M
3300024346|Ga0244775_11083266Not Available629Open in IMG/M
3300025531|Ga0209707_1047347All Organisms → Viruses → Predicted Viral1183Open in IMG/M
3300025531|Ga0209707_1062955All Organisms → cellular organisms → Bacteria960Open in IMG/M
3300025592|Ga0209658_1047879Not Available1162Open in IMG/M
3300025592|Ga0209658_1095189Not Available698Open in IMG/M
3300025592|Ga0209658_1099148Not Available677Open in IMG/M
3300025614|Ga0209665_1090324All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Alphaproteobacteria incertae sedis → SAR116 cluster → Candidatus Puniceispirillum → unclassified Candidatus Puniceispirillum → Candidatus Puniceispirillum sp. TMED52851Open in IMG/M
3300025623|Ga0209041_1028370Not Available1932Open in IMG/M
3300025639|Ga0209495_1002539All Organisms → cellular organisms → Bacteria11868Open in IMG/M
3300025639|Ga0209495_1006450All Organisms → cellular organisms → Bacteria6363Open in IMG/M
3300025639|Ga0209495_1028681Not Available2239Open in IMG/M
3300025639|Ga0209495_1059294All Organisms → Viruses → Predicted Viral1308Open in IMG/M
3300025662|Ga0209664_1031378All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium1673Open in IMG/M
3300025663|Ga0209775_1004940All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria5017Open in IMG/M
3300025663|Ga0209775_1071857All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Alphaproteobacteria incertae sedis → SAR116 cluster → Candidatus Puniceispirillum → unclassified Candidatus Puniceispirillum → Candidatus Puniceispirillum sp. TMED521033Open in IMG/M
3300025663|Ga0209775_1137760Not Available692Open in IMG/M
3300025665|Ga0209360_1095156Not Available890Open in IMG/M
3300025673|Ga0209494_1000799All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Dehalococcoidia → unclassified Dehalococcoidia → Dehalococcoidia bacterium14032Open in IMG/M
3300025673|Ga0209494_1016567All Organisms → Viruses → Predicted Viral2719Open in IMG/M
3300025673|Ga0209494_1018220All Organisms → Viruses → Predicted Viral2575Open in IMG/M
3300025673|Ga0209494_1025809All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium2091Open in IMG/M
3300025673|Ga0209494_1026715All Organisms → Viruses → Predicted Viral2047Open in IMG/M
3300025673|Ga0209494_1081317All Organisms → Viruses → Predicted Viral1015Open in IMG/M
3300025673|Ga0209494_1121957Not Available775Open in IMG/M
3300025673|Ga0209494_1180989Not Available589Open in IMG/M
3300025673|Ga0209494_1219281Not Available512Open in IMG/M
3300025681|Ga0209263_1139266Not Available702Open in IMG/M
3300025700|Ga0209661_1074300Not Available1077Open in IMG/M
3300025700|Ga0209661_1085138All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium987Open in IMG/M
3300025707|Ga0209667_1163524Not Available649Open in IMG/M
3300025722|Ga0209660_1103664Not Available992Open in IMG/M
(restricted) 3300027861|Ga0233415_10065266All Organisms → Viruses → Predicted Viral1548Open in IMG/M
(restricted) 3300027861|Ga0233415_10654910Not Available513Open in IMG/M
3300028039|Ga0256380_1008988Not Available1578Open in IMG/M
3300028189|Ga0257127_1002031All Organisms → cellular organisms → Archaea → Candidatus Thermoplasmatota → Candidatus Poseidoniia → Candidatus Poseidoniales → unclassified Candidatus Poseidoniales → Candidatus Poseidoniales archaeon13120Open in IMG/M
3300028189|Ga0257127_1067618Not Available1120Open in IMG/M
3300028198|Ga0257121_1226196Not Available584Open in IMG/M
3300028287|Ga0257126_1083474Not Available1194Open in IMG/M
3300031803|Ga0310120_10451556Not Available651Open in IMG/M

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).



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Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:
HabitatTaxonomyDistribution
Methane Seep MesocosmEnvironmental → Aquatic → Marine → Unclassified → Unclassified → Methane Seep Mesocosm30.48%
MarineEnvironmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine17.14%
SeawaterEnvironmental → Aquatic → Marine → Inlet → Unclassified → Seawater10.48%
Deep SubsurfaceEnvironmental → Aquatic → Marine → Volcanic → Unclassified → Deep Subsurface9.52%
MarineEnvironmental → Aquatic → Marine → Coastal → Unclassified → Marine7.62%
MarineEnvironmental → Aquatic → Marine → Inlet → Unclassified → Marine3.81%
MarineEnvironmental → Aquatic → Marine → Unclassified → Unclassified → Marine3.81%
Hydrothermal Vent PlumeEnvironmental → Aquatic → Marine → Hydrothermal Vents → Unclassified → Hydrothermal Vent Plume3.81%
MarineEnvironmental → Aquatic → Marine → Oceanic → Photic Zone → Marine2.86%
MarineEnvironmental → Aquatic → Marine → Oceanic → Aphotic Zone → Marine1.90%
Marine SedimentEnvironmental → Aquatic → Marine → Hydrothermal Vents → Sediment → Marine Sediment1.90%
MarineEnvironmental → Aquatic → Marine → Oceanic → Unclassified → Marine0.95%
Background SeawaterEnvironmental → Aquatic → Marine → Oceanic → Aphotic Zone → Background Seawater0.95%
Marine EstuarineEnvironmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine Estuarine0.95%
EstuarineEnvironmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine0.95%
SeawaterEnvironmental → Aquatic → Marine → Pelagic → Unclassified → Seawater0.95%
Freshwater And MarineEnvironmental → Aquatic → Marine → Neritic Zone → Unclassified → Freshwater And Marine0.95%
MarineEnvironmental → Aquatic → Marine → Hydrothermal Vents → Unclassified → Marine0.95%

Visualization
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Associated Samples

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Taxon OIDSample NameHabitat TypeIMG/M Link
2189573026Marine microbial communities from Columbia River, CM, sample from Cape Meares, GS311-FOS-0p8-Deep1200EnvironmentalOpen in IMG/M
3300000256Marine microbial communities from expanding oxygen minimum zones in Line P, North Pacific Ocean - ample_F_10_SI03_120EnvironmentalOpen in IMG/M
3300000257Marine microbial communities from expanding oxygen minimum zones in Line P, North Pacific Ocean - sample_F_10_SI03_100EnvironmentalOpen in IMG/M
3300000264Marine microbial communities from expanding oxygen minimum zones in Line P, North Pacific Ocean - sample_A_09_P04_500EnvironmentalOpen in IMG/M
3300000930Marine microbial communities from the coastal margin of the Columbia River, USA - 33 PSU, 16mEnvironmentalOpen in IMG/M
3300001683Hydrothermal vent plume microbial communities from Guaymas Basin, Gulf of California - IDBA assemblyEnvironmentalOpen in IMG/M
3300002242Marine sediment microbial communities from Kolumbo Volcano mats, Greece - white/grey matEnvironmentalOpen in IMG/M
3300003153Marine microbial communities from deep-sea hydrothermal vent plumes in the Guaymas BasinEnvironmentalOpen in IMG/M
3300003478Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - SI037_S3LV_100m_DNAEnvironmentalOpen in IMG/M
3300003500Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - SI037_S4LV_100m_DNAEnvironmentalOpen in IMG/M
3300004280Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - SI075_LV_DNA_100mEnvironmentalOpen in IMG/M
3300005838Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - SI037_S2LV_130m_DNAEnvironmentalOpen in IMG/M
3300007758Diffuse hydrothermal flow volcanic vent microbial communities from Axial Seamount, northeast Pacific ocean - Sample CTDPlume_2015_DNA CLC_assemblyEnvironmentalOpen in IMG/M
3300008224Methane-oxidizing microbial communities from mesocosms in the Hudson Canyon - EN1E Hudson CanyonEnvironmentalOpen in IMG/M
3300008253Methane-oxidizing microbial communities from mesocosms in the Hudson Canyon - EN1B Hudson CanyonEnvironmentalOpen in IMG/M
3300008254Methane-oxidizing microbial communities from mesocosms in the Hudson Canyon - EN4B Hudson CanyonEnvironmentalOpen in IMG/M
3300008952Marine water column microbial communities of the permanently stratified Cariaco Basin, Venezuela, November cruise - 237m, 250-2.7umEnvironmentalOpen in IMG/M
3300009106Marine water column microbial communities of the permanently stratified Cariaco Basin, Venezuela, May cruise - 295m, 2.7-0.2um, replicate aEnvironmentalOpen in IMG/M
3300009375Combined Assembly of Gp0137073, Gp0137074EnvironmentalOpen in IMG/M
3300009378Combined Assembly of Gp0137076, Gp0137077EnvironmentalOpen in IMG/M
3300009481Deep subsurface microbial communities from Kolumbo volcano to uncover new lineages of life (NeLLi) - 2SBTROV12_ACTIVE470 metaGEnvironmentalOpen in IMG/M
3300009702Deep subsurface microbial communities from Kolumbo volcano to uncover new lineages of life (NeLLi) - 2SBTROV14_V59a metaGEnvironmentalOpen in IMG/M
3300009703Deep subsurface microbial communities from Kolumbo volcano to uncover new lineages of life (NeLLi) - 4SBTROV12_W25 metaGEnvironmentalOpen in IMG/M
3300011013Deep subsurface microbial communities from Kolumbo volcano to uncover new lineages of life (NeLLi) - 4SBTROV10_white metaGEnvironmentalOpen in IMG/M
3300013115Marine water column microbial communities of the permanently stratified Cariaco Basin, Venezuela, May cruise - 234m, 250-2.7um, replicate aEnvironmentalOpen in IMG/M
3300013118Marine water column microbial communities of the permanently stratified Cariaco Basin, Venezuela, May cruise - 314m, 250-2.7um, replicate bEnvironmentalOpen in IMG/M
3300022931 (restricted)Seawater microbial communities from Saanich Inlet, British Columbia, Canada - SI_122_August2016_100_MGEnvironmentalOpen in IMG/M
3300022933 (restricted)Seawater microbial communities from Saanich Inlet, British Columbia, Canada - SI_118_April2016_100_MGEnvironmentalOpen in IMG/M
3300024243 (restricted)Seawater microbial communities from Saanich Inlet, British Columbia, Canada - SI_122_August2016_150_MGEnvironmentalOpen in IMG/M
3300024261 (restricted)Seawater microbial communities from Saanich Inlet, British Columbia, Canada - SI_123_September2016_100_MGEnvironmentalOpen in IMG/M
3300024344Deep subsurface microbial communities from Kolumbo volcano to uncover new lineages of life (NeLLi) - 2SBTROV12_ACTIVE470 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300024346Whole water sample coassemblyEnvironmentalOpen in IMG/M
3300025531Methane-oxidizing microbial communities from mesocosms in the Hudson Canyon - EN4B Hudson Canyon (SPAdes)EnvironmentalOpen in IMG/M
3300025592Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - SI037_S4LV_150m_DNA (SPAdes)EnvironmentalOpen in IMG/M
3300025614Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - SI074_LV_200m_DNA (SPAdes)EnvironmentalOpen in IMG/M
3300025623Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - SI037_S2LV_100m_DNA (SPAdes)EnvironmentalOpen in IMG/M
3300025639Methane-oxidizing microbial communities from mesocosms in the Hudson Canyon - EN1E Hudson Canyon (SPAdes)EnvironmentalOpen in IMG/M
3300025662Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - SI073_LV_150m_DNA (SPAdes)EnvironmentalOpen in IMG/M
3300025663Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - SI072_LV_135m_DNA (SPAdes)EnvironmentalOpen in IMG/M
3300025665Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - SI037_S3LV_130m_DNA (SPAdes)EnvironmentalOpen in IMG/M
3300025673Methane-oxidizing microbial communities from mesocosms in the Hudson Canyon - EN1B Hudson Canyon (SPAdes)EnvironmentalOpen in IMG/M
3300025681Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - SI075_LV_DNA_100m (SPAdes)EnvironmentalOpen in IMG/M
3300025700Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - SI072_LV_120m_DNA (SPAdes)EnvironmentalOpen in IMG/M
3300025707Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - SI074_LV_165m_DNA (SPAdes)EnvironmentalOpen in IMG/M
3300025722Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - SI072_LV_100m_DNA (SPAdes)EnvironmentalOpen in IMG/M
3300027861 (restricted)Seawater microbial communities from Saanich Inlet, British Columbia, Canada - Na_anoxic_12_MGEnvironmentalOpen in IMG/M
3300028039Seawater viral communities from deep brine pools at the bottom of the Mediterranean Sea - LS1 2300mEnvironmentalOpen in IMG/M
3300028189Marine microbial communities from Saanich Inlet, British Columbia, Canada - SI060_135mEnvironmentalOpen in IMG/M
3300028198Marine microbial communities from Saanich Inlet, British Columbia, Canada - SI106_100EnvironmentalOpen in IMG/M
3300028287Marine microbial communities from Saanich Inlet, British Columbia, Canada - SI060_120mEnvironmentalOpen in IMG/M
3300031803Marine microbial communities from Western Arctic Ocean, Canada - CB27_AW_983EnvironmentalOpen in IMG/M

Geographical Distribution
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Family Sequences

Note: Some of these sequences are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Protein ID Sample Taxon ID Habitat Sequence
GS311G0146KB_003608302189573026Marine EstuarineMDERRCSEMETILKVHRQRIDELEHTLGEINKQLAHIKGGVYGICLYAVATQLGVLEAIK
LP_F_10_SI03_120DRAFT_100633013300000256MarineMETIIKVHRQRIDELETTLDEINKQLAHIKGGVYGICLYAVATQLGILEAIKL*
LP_F_10_SI03_120DRAFT_101594433300000256MarineMDEHRCSEMETIIKVHRQRIDELETTLDEINKQLAHIKGGVYGICLYAVATQLGILEALKL*
LP_F_10_SI03_100DRAFT_102612923300000257MarineMSTPEKCSEMDTILKVHRQRIDELEKMLGSINTQLIQIKACVYGALGYAVATQLGVIEALKL*
LP_A_09_P04_500DRAFT_100184653300000264MarineMETILKVHRQRIDELEHTLGEINKQLAHIKGGVYGICLYAVATQLGVLEAIKL*
LP_A_09_P04_500DRAFT_103555613300000264MarineELETILKVHRARMDDMEKLVQDINRQLIQIKACAYGAVGYAIATQMGIIEAITL*
BpDRAFT_1005119563300000930Freshwater And MarineMDERSCAEMETILKVHRSRLDDLEKTLTNINTQLAQIKACVYGALGYAVATQMGIIEAIKL*
GBIDBA_10013345113300001683Hydrothermal Vent PlumeMPNAEKCSELEPILKVHRARMDEMEKLVQDINRQLIQIKACAYGAVGYAIATQMGIIEAITL*
GBIDBA_1003165623300001683Hydrothermal Vent PlumeMMDERKCSEMDTILKVHRQRIDELEKMLSSINTQLVQIKACAYGAVGYAVATQLGVIEAIKLGAG*
GBIDBA_1006864133300001683Hydrothermal Vent PlumeMDERKCSEMDTILKVHRQRIDELEHTLSEINRQLAHIKGCVYGACGYAVATQLGIIEAIKL*
GBIDBA_1009543333300001683Hydrothermal Vent PlumeMDERRCSEMETILKVHRSRIDDLEKTLTNINTQLVQIKACAYGAVGYAVATQLGILEAIKL*
KVWGV2_1083684713300002242Marine SedimentMDERRCSEMETILKVHRQRIDDLEKTLTNINTQLVQIKACAYGALGYAVATQMGIIEAIKL*
KVWGV2_1096599313300002242Marine SedimentMMDERSCAEMETILKVHRQRIDALERTLTNINTQLIQIKACAYGAVGYAVATQLGILEAIKM*
Ga0052192_123064813300003153MarineMTTPEKCTEVDVILKVHRARMDEMERLVQDINRQLIQIKACAYGAVGYAVATQMGIIEALKL*
JGI26238J51125_103168733300003478MarineMDEHRCSEMETIIKVHRQRIDELETTLDEINKQLAHIKGGVYGICIYAVATQLGILEAIKL*
JGI26238J51125_107078113300003478MarineMDEHRCSEMETIIKVHRQRIDELETTLDEINKQLAHIKGGVYGICIYAVATQLGILEALKL*
JGI26242J51144_103332013300003500MarineMSTPEKCSEMDTILKVHRGRIDDLEKTLTNINTQLIQIKACVYGALGYAVATQLGVIEAIKL*
Ga0066606_1002321743300004280MarineMSTPEKCSEMDTILKVHRQRIDELEKMLGSINTQLIQIKACVYGALGYAVATQLGVIEAIKL*
Ga0066606_1009426633300004280MarineCAEMETILKVHRSRLDDLEKTLTNINTQLAQIKACVYGALGYAVATQMGIIEAIKL*
Ga0066606_1025323213300004280MarineMDEHRCSEMETILKVHKTRIDELDTTLDEINKQLAHIKGGVYGICLYAVATQLGILEAIKL*
Ga0008649_1005968033300005838MarineMDEHRCSEMETIIKVHRQRIDELETTLDEINKQLAHIKGGVYGICLYAVATQLGILEAIKL*
Ga0105668_111183813300007758Background SeawaterMDERRCSEMETILKVHRQRIDELEHTLDEINKQLAHIKGGVYGICLYAVATQLGILEAIKL*
Ga0105350_1000636693300008224Methane Seep MesocosmMSTPEKCSEMETILKVHRSRIDDLDKMLSSINTQLIQIKACVYGALGYAVATQLGVIEAIKL*
Ga0105350_1000999643300008224Methane Seep MesocosmMNEAKCSEMDTILKVHKQRIDELEKLLDSIHTQLTQIKACAYGACGYALATQMGIVEALKLGS*
Ga0105350_1001006853300008224Methane Seep MesocosmMDEHRCSEMETILKVHRQRIDELETTLDEINKQLAHIKGGVYGICLYAVATQLGILEAIKL*
Ga0105350_1002121473300008224Methane Seep MesocosmMNEAKCSEMDTILKVHKQRIDELEKLLDSIHTQLTQIKACAYGAVGYAVATQMGLIEAIKLGS*
Ga0105349_1001419143300008253Methane Seep MesocosmMDERKCSEMDTILKVHRQRIDELETTLDKINKQLAHIKGGVYGICLYAVATQLGILEAIKL*
Ga0105349_1002530613300008253Methane Seep MesocosmWDEIMDESKCSEMETILKVHRARIDELDHTLGEINRQLAHIKGCVYGACGYAVATQLGIIEAIKL*
Ga0105349_1003204123300008253Methane Seep MesocosmMDERSCAEMETILKVHRSRLDDLEKTLTNINTQLAQIKACVYGALGYAVATQMGIIEAIKLGAG*
Ga0105349_1004115833300008253Methane Seep MesocosmMDERSCAEMETILKVHRSRIDDLEKTLSNINTQLVQIKACAYGAVGYAVATQLGVLEAIKL*
Ga0105349_1004142653300008253Methane Seep MesocosmMSTPEKCSEMDTILKVHRQRIDELEKMLSSINTQLIQIKACVYGALGYAVATQLGVIEALKL*
Ga0105349_1009208043300008253Methane Seep MesocosmMMDERKCSEMDTILKVHRQRIDELEHTLSEINSQLAHIKGCVYGACGYAVATQLGIIEAIKL*
Ga0105349_1009303533300008253Methane Seep MesocosmMSTPEKCSEMDTILKVHRQRIDELEKMLGSINTQLIQIKAVAYGALGYAVATQLGVIEALKL*
Ga0105349_1020405823300008253Methane Seep MesocosmMDESKCSEMETILKVHRQRIDELDHTLSEINKQLAHIKGGVYGICLYAVATQLGILEAIKL*
Ga0105349_1024197933300008253Methane Seep MesocosmMMDERSCSEMETILKVHKTRIDELEHTLDEINKQLAHIKGGVYGICLYAVATQLGILEAIKL*
Ga0105349_1028891023300008253Methane Seep MesocosmMNEAKCSEMDTILKVHKQRIDELEKLLDSIHKELTQIKACAYGAVGYAVATQMGIVEALKLGS*
Ga0105349_1031295523300008253Methane Seep MesocosmMMNESKCSEFETILKVHRGRIDDLEKTLTDINTQLVQIKACVYGALGYAVATQLGVIEAIKL*
Ga0105351_104200243300008254Methane Seep MesocosmMNEAKCSEMDTILKVHKQRIDELEKLLDSIHTQLTQIKACAYGAVGYAVATQMGIIEAIKLGS*
Ga0105351_107993313300008254Methane Seep MesocosmMNEAKCSEMDTILKVHKQRIDELEKLLDSIHTQLTQIKACAYGACGYA
Ga0115651_102685763300008952MarineMDERSCAEMETILKVHRQRIDDLEKTLTDINTQLIQIKACVYGAVGYAIATQLGILEAIRI*
Ga0117917_1003133183300009106MarineMDERSCAEMETILKVHRQRIDDLEKTLSNINTQLIQIKACVYGAVGYAVATQLGILEALKLGAG*
Ga0118721_104188823300009375MarineMDERSCAEMETILKVHRQRIDDLEKTLTDINTQLIQIKACVYGAVGYAVATQLGILEAIRI*
Ga0118726_104773443300009378MarineMDERSCAEMETILKVHRQRIDDLEKTLTDINTQLIQIKACVYGAVGYAIATQLGILEVIKL*
Ga0118726_114312723300009378MarineMDERSCAEMETILKVHRQRIDDLEKTLNDIHTQLTQIKACAYGAVGYAVASQLGILEAIRI*
Ga0118726_118978513300009378MarineMDDRSCAEMETILKVHRQRIDDLEKTLNDINTQLVQIKACAYGALGYAVAS
Ga0114932_1016353323300009481Deep SubsurfaceMDERSCAEMQTILKVHRQRIDDLEKTLTNINTQLAQIKACAYGAVGYAVATQMGIIEAIKL*
Ga0114931_1070914413300009702Deep SubsurfaceMDERSCAEMQTILKVHRSRIDDLEKTLTNINTQLIQIKACAYGAVGYAVATQLGVIEAIKL*
Ga0114933_10000701263300009703Deep SubsurfaceMDESKCSEMETILKVHRSRLDDLEKTLTNINTQLIQIKACAYGAVGYAVATQMGIIEAIKL*
Ga0114933_1019671933300009703Deep SubsurfaceMDERSCAEMETILKVHRQRIDDLEKTLTNINTQLVQIKACAYGALGYAVATQMGIIEAIKL*
Ga0114933_1021095123300009703Deep SubsurfaceMDERRCSEMETILKVHRQRIDDLEKTLTNINTQLVQIKACAYGAVGYAVATQLGILEAIKL*
Ga0114933_1021095223300009703Deep SubsurfaceMDEAKCSEMDTILKVHRQRIDELEHTLDEINRQLAHIKGCVYGACGYAVATQLGIIEAIKL*
Ga0114933_1074363213300009703Deep SubsurfaceMDERSCAEMETILKVHRQRIDDLEKTLTNINTQLIQIKACAYGAVGYAVATQLGILEAIKM*
Ga0114933_1100036713300009703Deep SubsurfaceMDEAKCSEMETILKVHRSRLDDLEKTLTNINTQLAQIKACVYGALGYAVATQMGVIEAIKL*
Ga0114934_1052526913300011013Deep SubsurfaceMDEAKCSEMDTILKVHRQRIDDLEHTLDEINRQLAHIKGCVYGACGYAVATQLGIIEAIKL*
Ga0171651_105705013300013115MarineILKVHRQRIDDLEKTLSNINTQLIQIKACVYGAVGYAVATQLGILEALKLGAG*
Ga0171656_114606043300013118MarineMDERSCAEMETILKVHRQRIDDLEKTLSNINTQLIQIKACVYGAVGYAVATQLGILEALKLG
(restricted) Ga0233433_1027438623300022931SeawaterMNESKCSEMDTILKVHKQRIDDLEKLLDDIHTQLTQIKACAYGAVGYAVASQMGLIEAIKLGS
(restricted) Ga0233433_1029130823300022931SeawaterMDEHRCSEMETIIKVHRQRIDELETTLDEINKQLAHIKGGVYGICLYAVATQLGI
(restricted) Ga0233427_10001534263300022933SeawaterMDEHRCSEMETILKVHRQRIDELDTTLDEINKQLAHIKGGVYGICLYAVATQLGILEAIK
(restricted) Ga0233427_1001727963300022933SeawaterMDEHRCSEMETILKVHRSRLDDLEKTLTNINTQLAQIKACVYGALGYAVATQMGIIEAIK
(restricted) Ga0233427_1008911523300022933SeawaterMSTPEKCSEMDTILRVHRGRIDDLEKTLTNINTQLIQIKACVYGALGYAVATQLGVIEAIKL
(restricted) Ga0233436_104540453300024243SeawaterMDEHRCSEMETIIKVHRQRIDELETTLDEINKQLAHIKGGVYGICLYAVATQLGILEAIK
(restricted) Ga0233439_1005282123300024261SeawaterMDEHRCSEMETIIKVHRQRIDELETTLDEINKQLAHIKGGVYGICIYAVATQLGILEAIK
(restricted) Ga0233439_1014590633300024261SeawaterMDERSCAEMETILKVHRSRLDDLEKTLTNINTQLAQIKACVYGALGYAVATQMGIIEAIK
(restricted) Ga0233439_1016136013300024261SeawaterSTPEKCTEMDTVIKVHRARMDEMEKLVQDINRQLIQIKACAYGAVGYAIATQMGIIEAIK
Ga0209992_1039251923300024344Deep SubsurfaceMDERSCAEMQTILKVHRQRIDDLEKTLTNINTQLAQIKACAYGAVGYAVATQMGIIEAIK
Ga0244775_1108326633300024346EstuarineMNEAKCSEMDTILKVHRQRIDELEKMLGSINTQLIQIKACVYGALGYAVATQLGVIEALK
Ga0209707_104734713300025531Methane Seep MesocosmMNEAKCSEMDTILKVHKQRIDELEKLLDSIHTQLTQIKACAYGAVGYA
Ga0209707_106295533300025531Methane Seep MesocosmMNEAKCSEMDTILKVHKQRIDELEKLLDSIHTQLTQIKACAYGA
Ga0209658_104787923300025592MarineMDEHRCSEMETIIKVHRQRIDELETTLDEINKQLAHIKGGVYGICIYAVATQLGILEALK
Ga0209658_109518913300025592MarineEMDTILRVHRGRIDDLEKTLTNINTQLIQIKACVYGALGYAVATQLGVIEAIKL
Ga0209658_109914813300025592MarineMDEHRCSEMETIIKVHRQRIDELETTLDEINKQLAHIKGGVYGICLYAVATQLGILEALK
Ga0209665_109032433300025614MarineMSTPEKCSEMDTILKVHRQRIDELEKMLGSINTQLIQIKACVYGALGYAVATQLGVIEALKL
Ga0209041_102837013300025623MarineMSTPEKCSEMDTILKVHRGRIDDLEKTLTNINTQLIQIKACVYGALGYAVATQLGVIEAIKL
Ga0209495_1002539123300025639Methane Seep MesocosmMNEAKCSEMDTILKVHKQRIDELEKLLDSIHTQLTQIKACAYGAVGYAVATQMGLIEAIKLGS
Ga0209495_100645093300025639Methane Seep MesocosmMSTPEKCSEMETILKVHRSRIDDLDKMLSSINTQLIQIKACVYGALGYAVATQLGVIEAIKL
Ga0209495_102868133300025639Methane Seep MesocosmMDEHRCSEMETILKVHRQRIDELETTLDEINKQLAHIKGGVYGICLYAVATQLGILEAIK
Ga0209495_105929443300025639Methane Seep MesocosmMNEAKCSEMDTILKVHKQRIDELEKLLDSIHTQLTQIKACAYGACGYALATQMGIVEALKLGS
Ga0209664_103137833300025662MarineMSTPEKCSEMDTILKVHRQRIDELEKMLGSINTQLIQIKACVYGALGYAVATQLGVIEAIKL
Ga0209775_100494073300025663MarineMDEHRCSEMETILKVHKTRIDELDTTLDEINKQLAHIKGGVYGICLYAVATQLGILEAIK
Ga0209775_107185713300025663MarineMSTPEKCSEMDTILKVHRQRIDELEKMLGSINTQLIQIKACVYGALGYAVATQLG
Ga0209775_113776033300025663MarineNAMSTPEKCSEMDTILKVHRQRIDELEKMLGSINTQLIQIKACVYGALGYAVATQLGVIEALKL
Ga0209360_109515633300025665MarineNEMDEHRCSEMETIIKVHRQRIDELETTLDEINKQLAHIKGGVYGICIYAVATQLGILEAIKL
Ga0209494_100079923300025673Methane Seep MesocosmLNDAKCTELETIIKVHRTRIDELEKLLDNIHTQLTQIKACAYGACGYAVATQMGIIDAITMK
Ga0209494_101656743300025673Methane Seep MesocosmMDERSCAEMETILKVHRSRIDDLEKTLSNINTQLVQIKACAYGAVGYAVATQLGVLEAIK
Ga0209494_101822043300025673Methane Seep MesocosmMDESKCSEMETILKVHRARIDELDHTLGEINRQLAHIKGCVYGACGYAVATQLGIIEAIK
Ga0209494_102580953300025673Methane Seep MesocosmMDESKCSEMETILKVHRQRIDELDHTLSEINKQLAHIKGGVYGICLYAVATQLGILEAIK
Ga0209494_102671543300025673Methane Seep MesocosmMMDERKCSEMDTILKVHRQRIDELEHTLSEINSQLAHIKGCVYGACGYAVATQLGIIEAIKL
Ga0209494_108131723300025673Methane Seep MesocosmMDERKCSEMDTILKVHRQRIDELETTLDKINKQLAHIKGGVYGICLYAVATQLGILEAIK
Ga0209494_112195723300025673Methane Seep MesocosmMMNESKCSEFETILKVHRGRIDDLEKTLTDINTQLVQIKACVYGALGYAVATQLGVIEAIKL
Ga0209494_118098923300025673Methane Seep MesocosmMNEAKCSEMDTILKVHKQRIDELEKLLDSIHKELTQIKACAYGAVGYAVATQMGIVEALKLGS
Ga0209494_121928113300025673Methane Seep MesocosmMMDERSCSEMETILKVHKTRIDELEHTLDEINKQLAHIKGGVYGICLYAVATQLGILEAIKL
Ga0209263_113926623300025681MarineGIVVWWPENTNRDEVMNERSCAEMETILKVHRSRLDDLEKTLTNINTQLAQIKACVYGALGYAVATQMGIIEAIKL
Ga0209661_107430013300025700MarineNRDEIMDEHRCSEMETIIKVHRQRIDELETTLDEINKQLAHIKGGVYGICLYAVATQLGILEAIKM
Ga0209661_108513833300025700MarinePEKCSEMDTILKVHRQRIDELEKMLGSINTQLIQIKACVYGALGYAVATQLGVIEALKL
Ga0209667_116352433300025707MarineMSTPEKCSEMETILKVHRSRLDDLEKTLTNINTQLIQIKACVYGALGYAVATQLG
Ga0209660_110366423300025722MarineMDTILKVHRQRIDELEKMLGSINTQLIQIKACVYGALGYAVATQLGVIEALKL
(restricted) Ga0233415_1006526633300027861SeawaterMDESKCSEMETILKVHRQRIDELETTLDEINKQLAHIKGGVYGICIYAVATQLGILEAIK
(restricted) Ga0233415_1065491013300027861SeawaterHHDRTCLGSGVSHSCRIVVWWVKNTNRNEIMDEHRCSEMETILKVHKTRIDELDTTLDEINKQLAHIKGGVYGICLYAVATQLGILEAIKL
Ga0256380_100898833300028039SeawaterMDERSCAEMETILKVHRSRIDDLEKTLTNINTQLAQIKACAYGALGYAVATQMGIIEAIK
Ga0257127_100203193300028189MarineMETILKVHRQRIDELETTLDEINKQLAHIKGGVYGICLYAVATQLGILEAIKL
Ga0257127_106761813300028189MarineVWWVKNTNRNEIMDEHRCSEMETILKVHKTRIDELDTTLDEINKQLAHIKGGVYGICLYAVATQLGILEAIKL
Ga0257121_122619613300028198MarineMDEHRCSEMETIIKVHRQRIDELETTLDEINKQLAHIKGGVYGI
Ga0257126_108347433300028287MarineMDERSCAEMETILKVHRQRIDELETTLDEINKQLAHIKGGVYGICLYAVATQLGILEAIK
Ga0310120_1045155613300031803MarineMDDRRCSEMETILKVHRQRIDELEHTLSEINRQLAHIKGCVYGACGYAVATQLGIIEAIK


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