Sample 3300013045

Basic Information
IMG/M Taxon OID	3300013045 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0090294 \| Gp0175826 \| Ga0154016
Sample Name	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5pm-2 (Metagenome Metatranscriptome)
Sequencing Status	Permanent Draft
Sequencing Center	DOE Joint Genome Institute (JGI)
Published?	N
Use Policy	Open

Dataset Contents
Total Genome Size	18296762
Sequencing Scaffolds	41
Novel Protein Genes	42
Associated Families	41

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	6
Not Available	22
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	6
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → unclassified Thermoleophilia → Thermoleophilia bacterium	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Nocardiaceae → Nocardia → Nocardia jinanensis	1
All Organisms → cellular organisms → Bacteria → Proteobacteria	1
All Organisms → Viruses → Predicted Viral	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	2

Ecosystem Assignment (GOLD)
Name	Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa
Type	Environmental
Taxonomy	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Corn, Switchgrass And Miscanthus Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	terrestrial biome → rhizosphere → soil
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere

Location Information
Location	USA: Michigan
Coordinates	Lat. (^o)	42.3948	Long. (^o)	-85.3738	Alt. (m)	N/A	Depth (m)	N/A
Location on Map

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Family	Category	Number of Sequences	3D Structure?
F000344	Metagenome / Metatranscriptome	1257	Y
F000364	Metagenome / Metatranscriptome	1229	Y
F000817	Metagenome / Metatranscriptome	879	Y
F001784	Metagenome / Metatranscriptome	635	Y
F002712	Metagenome / Metatranscriptome	535	Y
F003143	Metagenome / Metatranscriptome	505	Y
F003383	Metagenome / Metatranscriptome	490	Y
F003972	Metagenome / Metatranscriptome	459	Y
F004214	Metagenome / Metatranscriptome	448	Y
F004297	Metagenome / Metatranscriptome	445	Y

Scaffold	Taxonomy	Length	IMG/M Link
Ga0154016_100740	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	543	Open in IMG/M
Ga0154016_101409	Not Available	734	Open in IMG/M
Ga0154016_102532	Not Available	888	Open in IMG/M
Ga0154016_103219	Not Available	555	Open in IMG/M
Ga0154016_103245	Not Available	1775	Open in IMG/M
Ga0154016_104886	Not Available	544	Open in IMG/M
Ga0154016_106132	Not Available	598	Open in IMG/M
Ga0154016_106247	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	522	Open in IMG/M
Ga0154016_112476	Not Available	563	Open in IMG/M
Ga0154016_112642	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → unclassified Thermoleophilia → Thermoleophilia bacterium	741	Open in IMG/M

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0154016_100740	Ga0154016_1007402	F035429	GRVEVPGAPGWSYSSIGGAGGDALSVEMAGPDHAQVTFTVPDFLSRGDELGEVARVVIRAWERTVRSAGLGA*
Ga0154016_101409	Ga0154016_1014091	F013832	AGVHVRPHATTVCDNNPGTVSPRCTNISNLMLNQGNGPVFIQNATQKGVKAGSLYQNRIVNLRQASNTRTNEDFIIRQVSDIGHLCGTGGVNSLDPTSYACLNYPDFYPVFQGQFAPNSNETGFCVGAISATEGFKVRLERCGTPRTFWVGDIAASVQVTIVFNNAPFLLFYFPLEFSADTSASNPLVMTLNPNSKNPSNLLTLQQENFSGGLVPDRQMFTLTYPTGFIVHN*
Ga0154016_102532	Ga0154016_1025322	F104505	PGMRAPLRRSETRTGCTAAVADDRAASHGVRCSPGFCVRSAAGVHWVPRTRFVLVVSDGTGGVHRSPSTARLRVRFHPLVSFAPLQSPPSRVRRRCLHRQRLPWGSRSLIATSPGVVRAPSLPTLGAFPSTAFLTPSTASAATRLVGLFHPTATSRVRSTGVFPRKQPRRLVVVASHALSPVVRRPADDVATAATNRRPALRALFRLRIRCRQLGV*
Ga0154016_103219	Ga0154016_1032191	F000344	MRPRHPHAAESGVGKHTARESESAQACAAGKERVANAHPHKL
Ga0154016_103245	Ga0154016_1032452	F043786	LVRLDAPVAPILDLSVAANPRAALAALRGIIVFRRFPAMGRTVRAADSNPG*
Ga0154016_104886	Ga0154016_1048861	F027762	GSEPGTMIRERVVTKIIDAFGERRESGPGTKVSFSDCAAD*
Ga0154016_106132	Ga0154016_1061321	F070814	QGAVHEQLEAGRNFFLILPDGEDALARFCHSFKLQSDCLHGRFTRSDLLRMGQYVDGAAFDEMLAAWDAEDLVVFLEQLDFPINRPPHVKPFIVYSSLWGILSQHDDLRSARVWLEDSEQWDRTRLSQPHVYQWNNGGWKML*
Ga0154016_106247	Ga0154016_1062471	F003143	MEVVIGFAVGYWVGTRQGRQGLQNALESAQAIWAHPEARKMLAEGISAAQTVAGPVMERLGDKSSRSRRAALISSVVDELIERRQARRAA*
Ga0154016_106247	Ga0154016_1062472	F007821	VLGMLSRLVKAAVIAGVLALIIDSLPDIKRYLGIRDMLGPGAQERM*
Ga0154016_112476	Ga0154016_1124761	F065302	PGFTVRFSDPSACGRSLCGQVRRITRLHSPSPLFSMRRVTVQTRPSRSSTLPEPESRYGLSLAHNDAFATIARSTFLACTFVSASKTFASPFDSWLLRSVRFRGRTGALSLPGTRFPRRSPMLLTVPQSPLPFGSSCENPPDQSVQPVPVQEARLTRHSIASYSPPRPLSISLQINV*
Ga0154016_112642	Ga0154016_1126421	F011957	VTDEITLTLPREPEFHRVAHLVLGGLAVRLNLTIENLEDLELALDAILGRTDPDAGDITVRMTPRDGELETVVGPLTTKVLDEIEGEGDDGALGLRRVLESTVDDIHVDGPWVRLTKQVT
Ga0154016_114696	Ga0154016_1146961	F003383	MSRRVAPLPASSRPSRVAFPGCPFRAPFLLSRRPKPWVAPWLQSFGCAGDGCSSCPEPRMPLTLPVSAGIRVAPVAPASSCLASDAGLGLPLVLHLRLYRRWIIESPRCSHLSAVPSCQFSSCPANQPFGIADDSSFELPRTSNPPAPIDGYPSYPGSRTYRFALVESPS
Ga0154016_116872	Ga0154016_1168721	F095017	IAAVLVAVLPASAQAIRHGRVRLTAVSPAIVHGSGFYASERVTVTVRGASGVMQKSVMSTAGGAFTVRFGRAVPAGGCQGLTVSAVGARGDRADWKTAPPLCGTPLAP*
Ga0154016_117329	Ga0154016_1173291	F008193	AILAALCAVGSASAKGPHNIRYSFLGTLTSTPSNGGVSINVEGGNKVALRAMLGAPVTQTFAYGGDTEFLKWSKGVPTIVQAADLAAGDYVWVHVRAPRGSSLADIEKADAALVGDHGTQLYKPAQPLYLFRGTLTAVGSNGSVTVDVTGGNHRAMRLLIGAGRSETFSTGDDTIFLLWQ
Ga0154016_118479	Ga0154016_1184791	F065371	AIAAGVAGLLLWCATLVGVGSVTRFWESMGIVAAAGLVLALSQVVGGWTKGGRTRISPTTFLVAFLPVLVCVGWILMATQPGNGWHEGTIVSWSHSIGIMGLVHSLGLWHGVLAFGFGLVLGMTLDTVPVDEPVAAPAARSEAVVRNDTVRDDETLVADRRGPEWRQRPATGTDADEPLTAEREAARAAEPNTVTVGPRQDVES*
Ga0154016_120261	Ga0154016_1202611	F051345	DAAEEARVQDWQEERLGQLGYGPEIASRVVRAAWLDGNHSDLVHRIEDLVQRGATLDQAARIVASVRTDFDEPVAQGGGRNAAS*
Ga0154016_120271	Ga0154016_1202711	F015442	MTSQWWSGAGQSLRSSERPLRETGSGQAVLAGGLGSFNPLPSKGDSGESTRIRPGNLFAMLSAEYAGGGR
Ga0154016_121866	Ga0154016_1218661	F067753	MKKHFSKTKGSKGNGRVARTTKVDRDEDPTVPPQLLDQLSTGFTLRFTTQGTWPGSYTVTYGNLLDAWFVAGTATTAYQLFDFVKVKKVTVRAMGVADGAHFGPSATVGIEFPGLVGGQFGSGKQRQSSAIGETVPAYVSLKPDPMSQAAQFQPSTSNAVFIVRAVDGLRAALYGVIIDVQVVYKNSGDINPAAVTTARAGLTPGLIYFGGIDGLATANTIAKSTFIPIA*
Ga0154016_121916	Ga0154016_1219161	F082273	LRWTEAAERLPQKVSRIIPGDWGKDESGWLTYPLINRAARSGSGGRIHQFLWRRSRAVSNAKRNCAIRSDKKPLRVESSNLRRFRTQANRSYPEGNRLLLWISTGERLWRPLSGSAKRKTLKGVTK*
Ga0154016_123097	Ga0154016_1230972	F000817	LRWKEAVNRLKPEVSRIIPGDWGKAESGWLARPLLSRIARFGSGGRIHQFL*
Ga0154016_124436	Ga0154016_1244361	F040354	MRNRSIRGLYVLAASVAVSTALGLAGATAASAGVHVRPKATTVCDNNPGTVSPRCTNISNLMLNQDNGPVFIQNATQKGVKAPSLYQNRIVNLRQASNTRTNEDFIIRQVGVLAQLCGTGGVNSIDPTSYACLNYPGFYPVFQGQFAPNSNESGFCVGAISATEGFKVRLERCGTPRTFW
Ga0154016_125737	Ga0154016_1257371	F065371	AGVAGLLLWLATLVGVQSVTRFWESMGIVAAAGLVVALSQVVGGWTKGGGLRLSPGTFLLAFLPVLVCVGWILMATQPGNGWHEGTITSWSHSIGIMGLVHALGLWHGVLAFGFGLVLGMTLDTVPAPVVEPAGAPATGVVRDDETMVADRRGRTWRRRPAAGDDADEPLTAERDAAYTAEPNTVTVGPRSTSDAGE*
Ga0154016_126058	Ga0154016_1260581	F012204	MVEPGLDRHEWESEMQALEDQLGENPAEALPELDRLLERILEESGYELTDPTMRDGDEREVVSEFLAAREITQLAEKDNSDIGPGDVAAAINGYRAVFEYIVSTRSSADEA*
Ga0154016_126357	Ga0154016_1263571	F005005	DELHPKIRGTIVVKGAPPTLTLAASAKVVVAGDKVTLTGVVSNHAAGEQVAIFYQPYPMPNAIQRAVVLTTTGGAFAFDVAPGILTTYQATWKGAFATPTAVQVQPRLSLGRNGGWIIHAYGGHGLAGRDVQFQRLNTVTGQWVTLKKVQLNARSAARVEVTLPKGLNQLRLAMSVNSAGAGLLGGMSSVLIWRQK*
Ga0154016_126477	Ga0154016_1264771	F000364	EVMGVRRYLLVLDMDLLAADEELDLEPINHLVARQEQEPCEVVVMSLVRSRRARLPAMELVLGAHSGKFPVAPQPDHDISAAAEHRMNLAVRHLKTIGCQASGLISDEELVKAVRFETSHQGYDEVMLATGRQERSGLARLMGWDPVHRLRRKWGERLIVFPEGHRPEWPS*
Ga0154016_127327	Ga0154016_1273271	F001784	AKRHNEAIMGQVIHVAFGTEREWEQTRAKTVDGLVAIGTLFGDDESLMRAKADCVYQILRQIVEDVPSVQITTRMPENLSEEQLDLLTGAIKDAALKGIEIAMTHSVQILMASIYDLCTSKLQRRPS*
Ga0154016_127537	Ga0154016_1275372	F003972	PFEGRNESKEVAMQLDPHVAIAAVSTLAAAWLMITAGLQKSALERRRQRRVCPSCGREIQSRVCTTCTG*
Ga0154016_128152	Ga0154016_1281522	F005991	MYDASRGLTLALAAALAGLGLWGATQIGMQTTGRFWLSMAVVAGAGLLIALANHVGTWTKGLRLRMSPGTFALAFLPVLVCVGWILIANQPGHGWQEARLDSWSNSIGILGLVHSIGLWHGVLAFALGLVLGLSLDGVPAPVTETEPAYAGPADAATGPRVADEPVAAERRYATTRDSAPPEAAPPASPTEESAETQTRTRIPSR*
Ga0154016_128650	Ga0154016_1286505	F024195	VNADKAFNVLGAIITVALVTTIVSNKNSAAVIKSFGDAFSGSIKAAMGH*
Ga0154016_128908	Ga0154016_1289081	F004214	MRRIRVILAAVAVPVTVAALVLTAQGAQASTPECLNGTYHGYCGTQIDNGTPALVLDNSKQREAVNNPVIGWTDSSTDPATDWFQLAFAGDNALGVMFFWAPTGVNLDLCMADPGNGHVVLRQCNGSDWQRWIATQVGTTSFFTWKNRATHRILQSGARGAQLVTVTQS
Ga0154016_130920	Ga0154016_1309201	F005880	FQVTFRQLALRPACTARAWHSELARREPFAPRCRLWPTADQCAGARLLAIPIEARFSMRPFALQFRELASRPIPATASTFPAYTFETILRSDPARSAPRSRPRSAFCDLARRDQHAKPVAVPDPRTHDSSSNISSPPGSLDPSGSKPQPDVRTMKLTLAGRPIFLPSPRRGNNFTHHSALRIIGPDPLLPARLAVLR
Ga0154016_133083	Ga0154016_1330831	F010923	NDDPQPKLSLERAAGSERKSGGFVRRTGRQQTRLNALIPRDVKVPEGSGDRGRGQLNQGVEVQRASGSEAAATGAIRDAVVEPKGRTGTEAIWEEAK*
Ga0154016_133563	Ga0154016_1335631	F093444	MTHLDYDALKGKPVFSADGKQVGSITEVYHPNMDMPAARGRHYFLLDPGLIKDLFQGYDQVYLPESAIEGVSADGVQLNLTADQIKQRGQEWAAQPSGFAKYRRG*
Ga0154016_133928	Ga0154016_1339281	F087553	NNTTPQDYTGTVKVDVTRKAASSSVPSVNAQGLAFSSAVPADPQRDVAEPLITSDPEGVLYDCGPTGFSNASDYAEVSLDGGDQFHLMGTPPRGQQGLGGGGDCVVASGLAKNAQGHYEYAYAGLGALTGFTTSRSPDDGHTIANTPVNGNGLPGATSNGALADRQWMTFTDDHTVLLSYNQQEPRNVVVQTSTDGGLTYSAVSSIAAPDADFPGPMHFIPSSHTVVMPWTKGESVNLAVSRDGGATWRVVFRAEHRPTPVATSGTR*
Ga0154016_135712	Ga0154016_1357121	F032547	QQFSFLPACTVEAVQSGSSCVLPLVLPAPYFHSARIKAPGHASRLTPDRNPFLGTAFHSLDKTARFRTTLPRSMLLAYPFGSSLSLPRTRSIRPLVHAVWLAPDCANSTRQTRCPVPSQRPRPLFRPPLPFRAFGPFPIKALTSIPIERFTESTRPIALRSPLPAVLIEPATDQRSRLATSRSAYCLTN
Ga0154016_137457	Ga0154016_1374571	F002712	MTTEQRQSTGSGVARATFGTVLFIAWGVLSVLWVYDAIYELAHSHLTPAITAVVAILLMLVLAVMEGLEVVMIHDWSRLYPDRTARDLAAWLSARQMFVASICVAATILAARNMIHIPFTSYTIKGANSKIFNLIWTTFTVLWFMQILPKHMAAINPVRYLKMTGGAALPVVNVIKAIGISWPAEKTAAAVQSLTGWHPEPTL
Ga0154016_139329	Ga0154016_1393291	F016001	VFSRRLDPIPSWACLLQVFALDAVTTPSRRLSLVALMMTLSSHCHHRPSAIRHRAWLASLEAAYLLEVFDLPAISSCPEISDEVYHSASVNHLAMAGFRLF
Ga0154016_140184	Ga0154016_1401842	F100674	LVAPKPCGVYTRHWTPAARFRGPGRYTLTLRARDKSGLTSLPAHRSFSRG*
Ga0154016_141449	Ga0154016_1414493	F004332	VVSVGTRRGVADIAGITTGGRLAHVLKDAIEWEYRQSVRHLRGWDPVGPLSRPR*
Ga0154016_142165	Ga0154016_1421652	F041793	VIRFSAFLVVVAVGLLVAGVVTSKLLLVYIAIGVSGVALLALGIGAAVNWRELTGKPGTAHPETAEPRTQELSAQGPAPQAAVPEPVTSPVGASQ
Ga0154016_142845	Ga0154016_1428453	F004297	TGLYAGLGAASTMVARRLASKIWRVTTGEEPPTKK*
Ga0154016_142984	Ga0154016_1429843	F092574	VFPDAAAARGGGDPAVSDLITIDAVTTSALGFWTGEVAARPRCVSPLAKIKGTGVPAAGPSVPTIEGTGLPFTAVGAEALGAMWTDQVQGIAVRVPVATVQGDPPRRTPSRC*

Showing 1 to 42 of 42 entries

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

3300013045: Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5pm-2 (Metagenome Metatranscriptome)

Overview

Ecosystem and Geography

Associated Families

Associated Scaffolds

Sequences