Metagenome / Metatranscriptome Family F100674

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F100674
Family Type	Metagenome / Metatranscriptome
Number of Sequences	102
Average Sequence Length	51 residues
Representative Sequence	ATVVPPRPCGVYTRHWLPAARFRGPGRYTLTLRATDKSGLTSLPARRTFSHG
Number of Associated Samples	89
Number of Associated Scaffolds	102

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	0.00 %
% of genes near scaffold ends (potentially truncated)	100.00 %
% of genes from short scaffolds (< 2000 bps)	96.08 %
Associated GOLD sequencing projects	86
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.42

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (84.314 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil (15.686 % of family members)
Environment Ontology (ENVO)	Unclassified (32.353 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (52.941 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 3.75% β-sheet: 20.00% Coil/Unstructured: 76.25%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.42
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.42
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 102 Family Scaffolds
PF00270	DEAD	3.92
PF14023	DUF4239	2.94
PF13412	HTH_24	1.96
PF00571	CBS	1.96
PF00440	TetR_N	1.96
PF03459	TOBE	1.96
PF01883	FeS_assembly_P	1.96
PF02371	Transposase_20	0.98
PF03793	PASTA	0.98
PF08669	GCV_T_C	0.98
PF05199	GMC_oxred_C	0.98
PF03640	Lipoprotein_15	0.98
PF13528	Glyco_trans_1_3	0.98
PF00570	HRDC	0.98
PF02310	B12-binding	0.98
PF14329	DUF4386	0.98
PF12840	HTH_20	0.98
PF13365	Trypsin_2	0.98
PF13466	STAS_2	0.98
PF04542	Sigma70_r2	0.98
PF00578	AhpC-TSA	0.98
PF00903	Glyoxalase	0.98
PF13439	Glyco_transf_4	0.98
PF01569	PAP2	0.98
PF10400	Vir_act_alpha_C	0.98
PF00583	Acetyltransf_1	0.98
PF04101	Glyco_tran_28_C	0.98
PF06841	Phage_T4_gp19	0.98
PF00196	GerE	0.98
PF00106	adh_short	0.98

COG ID	Name	Functional Category	% Frequency in 102 Family Scaffolds
COG0568	DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32)	Transcription [K]	0.98
COG1191	DNA-directed RNA polymerase specialized sigma subunit	Transcription [K]	0.98
COG1595	DNA-directed RNA polymerase specialized sigma subunit, sigma24 family	Transcription [K]	0.98
COG2303	Choline dehydrogenase or related flavoprotein	Lipid transport and metabolism [I]	0.98
COG3547	Transposase	Mobilome: prophages, transposons [X]	0.98
COG4315	Predicted lipoprotein with conserved Yx(FWY)xxD motif (function unknown)	Function unknown [S]	0.98
COG4941	Predicted RNA polymerase sigma factor, contains C-terminal TPR domain	Transcription [K]	0.98

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	84.31 %
Unclassified	root	N/A	15.69 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	84.31 %
Unclassified	root	N/A	15.69 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	84.31 %
Unclassified	root	N/A	15.69 %

Name	Rank	Taxonomy	Distribution
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	68.63 %
Unclassified	root	N/A	15.69 %

Name	Rank	Taxonomy	Distribution
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	65.69 %
Unclassified	root	N/A	15.69 %
Chloroflexi	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	0.98 %

Name	Rank	Taxonomy	Distribution
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	41.18 %
Unclassified	root	N/A	15.69 %
unclassified Chloroflexi	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi	0.98 %

Name	Rank	Taxonomy	Distribution
unclassified Actinomycetia	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia	37.25 %
Unclassified	root	N/A	15.69 %
Propionibacteriales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales	0.98 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	0.98 %

Name	Rank	Taxonomy	Distribution
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	37.25 %
Unclassified	root	N/A	15.69 %
Nocardioidaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Nocardioidaceae	0.98 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	0.98 %

Name	Rank	Taxonomy	Distribution
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	37.25 %
Unclassified	root	N/A	15.69 %
Nocardioides	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Nocardioidaceae → Nocardioides	0.98 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	0.98 %

Name	Rank	Taxonomy	Distribution
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	37.25 %
Unclassified	root	N/A	15.69 %
Nocardioides islandensis	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Nocardioidaceae → Nocardioides → Nocardioides islandensis	0.98 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	0.98 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2170459006\|GBPF9FW01BUOGW	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	509	Open in IMG/M
2170459009\|GA8DASG01BNNT4	All Organisms → cellular organisms → Bacteria → Terrabacteria group	544	Open in IMG/M
3300001537\|A2065W1_10783736	Not Available	534	Open in IMG/M
3300002568\|C688J35102_118145156	Not Available	533	Open in IMG/M
3300004081\|Ga0063454_100425765	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	900	Open in IMG/M
3300004157\|Ga0062590_102243951	Not Available	573	Open in IMG/M
3300004463\|Ga0063356_105233964	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	557	Open in IMG/M
3300004480\|Ga0062592_100731645	All Organisms → cellular organisms → Bacteria	866	Open in IMG/M
3300004643\|Ga0062591_100322420	Not Available	1230	Open in IMG/M
3300004643\|Ga0062591_100508343	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1037	Open in IMG/M
3300004803\|Ga0058862_12847040	Not Available	506	Open in IMG/M
3300005176\|Ga0066679_10068492	All Organisms → cellular organisms → Bacteria	2092	Open in IMG/M
3300005181\|Ga0066678_10398294	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	913	Open in IMG/M
3300005329\|Ga0070683_101021312	All Organisms → cellular organisms → Bacteria	794	Open in IMG/M
3300005332\|Ga0066388_105266123	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	656	Open in IMG/M
3300005338\|Ga0068868_101077547	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	738	Open in IMG/M
3300005339\|Ga0070660_100030621	All Organisms → cellular organisms → Bacteria	4037	Open in IMG/M
3300005435\|Ga0070714_100399967	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1298	Open in IMG/M
3300005441\|Ga0070700_101704024	Not Available	541	Open in IMG/M
3300005445\|Ga0070708_101875376	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	556	Open in IMG/M
3300005535\|Ga0070684_100235271	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1673	Open in IMG/M
3300005535\|Ga0070684_100554432	All Organisms → cellular organisms → Bacteria	1067	Open in IMG/M
3300005537\|Ga0070730_10995577	Not Available	523	Open in IMG/M
3300005547\|Ga0070693_100411241	All Organisms → cellular organisms → Bacteria	940	Open in IMG/M
3300005574\|Ga0066694_10474486	All Organisms → cellular organisms → Bacteria	584	Open in IMG/M
3300005981\|Ga0081538_10282894	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	615	Open in IMG/M
3300006804\|Ga0079221_11599052	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	527	Open in IMG/M
3300009012\|Ga0066710_102561131	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	735	Open in IMG/M
3300009098\|Ga0105245_10122437	All Organisms → cellular organisms → Bacteria	2431	Open in IMG/M
3300009098\|Ga0105245_11341871	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	765	Open in IMG/M
3300009098\|Ga0105245_11879352	All Organisms → cellular organisms → Bacteria	652	Open in IMG/M
3300009148\|Ga0105243_13111604	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	502	Open in IMG/M
3300009174\|Ga0105241_11016908	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	776	Open in IMG/M
3300009174\|Ga0105241_11169882	All Organisms → cellular organisms → Bacteria	727	Open in IMG/M
3300009174\|Ga0105241_12346096	Not Available	532	Open in IMG/M
3300009551\|Ga0105238_10589544	Not Available	1119	Open in IMG/M
3300010326\|Ga0134065_10444677	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	529	Open in IMG/M
3300011271\|Ga0137393_11156534	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	657	Open in IMG/M
3300012011\|Ga0120152_1165345	Not Available	576	Open in IMG/M
3300012187\|Ga0136622_10288721	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	688	Open in IMG/M
3300012205\|Ga0137362_10921310	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	746	Open in IMG/M
3300012207\|Ga0137381_11656988	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	530	Open in IMG/M
3300012210\|Ga0137378_11382893	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	618	Open in IMG/M
3300012211\|Ga0137377_10266478	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1644	Open in IMG/M
3300012350\|Ga0137372_10941942	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	608	Open in IMG/M
3300012351\|Ga0137386_10794561	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	680	Open in IMG/M
3300012356\|Ga0137371_11145558	All Organisms → cellular organisms → Bacteria	583	Open in IMG/M
3300012360\|Ga0137375_10604370	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	913	Open in IMG/M
3300012362\|Ga0137361_11289051	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Nocardioidaceae → Nocardioides → Nocardioides islandensis	655	Open in IMG/M
3300012469\|Ga0150984_121382146	Not Available	603	Open in IMG/M
3300012532\|Ga0137373_10697153	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	757	Open in IMG/M
3300012684\|Ga0136614_10154078	All Organisms → cellular organisms → Bacteria	1741	Open in IMG/M
3300012903\|Ga0157289_10355439	All Organisms → cellular organisms → Bacteria	536	Open in IMG/M
3300012911\|Ga0157301_10341440	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	561	Open in IMG/M
3300012916\|Ga0157310_10021920	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1664	Open in IMG/M
3300012951\|Ga0164300_10121780	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1180	Open in IMG/M
3300012951\|Ga0164300_11154058	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	510	Open in IMG/M
3300012958\|Ga0164299_11521515	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	523	Open in IMG/M
3300012960\|Ga0164301_11792161	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	516	Open in IMG/M
3300012976\|Ga0134076_10521048	Not Available	545	Open in IMG/M
3300012984\|Ga0164309_11681258	All Organisms → cellular organisms → Bacteria	544	Open in IMG/M
3300012989\|Ga0164305_10491016	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	964	Open in IMG/M
3300013045\|Ga0154016_140184	Not Available	552	Open in IMG/M
3300013296\|Ga0157374_10282418	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1639	Open in IMG/M
3300013307\|Ga0157372_12417540	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	603	Open in IMG/M
3300013765\|Ga0120172_1019863	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1977	Open in IMG/M
3300013768\|Ga0120155_1215562	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	503	Open in IMG/M
3300013772\|Ga0120158_10278454	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	821	Open in IMG/M
3300014056\|Ga0120125_1093365	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	697	Open in IMG/M
3300014325\|Ga0163163_10683588	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1090	Open in IMG/M
3300014325\|Ga0163163_11600292	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	712	Open in IMG/M
3300014827\|Ga0120171_1110303	Not Available	680	Open in IMG/M
3300015371\|Ga0132258_11963964	All Organisms → cellular organisms → Bacteria	1472	Open in IMG/M
3300015372\|Ga0132256_100521710	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1299	Open in IMG/M
3300015372\|Ga0132256_101757716	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	729	Open in IMG/M
3300015372\|Ga0132256_103060175	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	562	Open in IMG/M
3300017656\|Ga0134112_10521869	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	505	Open in IMG/M
3300017792\|Ga0163161_10977781	Not Available	721	Open in IMG/M
3300018078\|Ga0184612_10239263	All Organisms → cellular organisms → Bacteria → Terrabacteria group	939	Open in IMG/M
3300018429\|Ga0190272_12652039	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	549	Open in IMG/M
3300018469\|Ga0190270_13124042	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	524	Open in IMG/M
3300018476\|Ga0190274_10026003	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	3927	Open in IMG/M
3300018476\|Ga0190274_11073140	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	883	Open in IMG/M
3300019263\|Ga0184647_1030944	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	770	Open in IMG/M
3300019888\|Ga0193751_1044923	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1943	Open in IMG/M
3300021968\|Ga0193698_1022489	All Organisms → cellular organisms → Bacteria	826	Open in IMG/M
3300024283\|Ga0247670_1048806	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	763	Open in IMG/M
3300025927\|Ga0207687_10926495	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	746	Open in IMG/M
3300025927\|Ga0207687_11124257	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	675	Open in IMG/M
3300025929\|Ga0207664_10404637	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1214	Open in IMG/M
3300025929\|Ga0207664_11566070	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	581	Open in IMG/M
3300025934\|Ga0207686_11079336	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	654	Open in IMG/M
3300025937\|Ga0207669_11825895	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	519	Open in IMG/M
3300028577\|Ga0265318_10150690	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	853	Open in IMG/M
3300028800\|Ga0265338_10922433	Not Available	594	Open in IMG/M
3300028828\|Ga0307312_10504057	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	799	Open in IMG/M
3300030336\|Ga0247826_11707674	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	514	Open in IMG/M
3300031231\|Ga0170824_102519887	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	737	Open in IMG/M
3300031235\|Ga0265330_10083446	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1375	Open in IMG/M
3300031753\|Ga0307477_10801045	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	626	Open in IMG/M
3300031938\|Ga0308175_100582739	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1201	Open in IMG/M
3300032001\|Ga0306922_11947162	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	574	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	70.59%
Host-Associated	Host-Associated	29.41%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	66.67%
Plants	Host-Associated → Plants	28.43%
Aquatic	Environmental → Aquatic	3.92%
Human	Host-Associated → Human	0.98%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	66.67%
Rhizosphere	Host-Associated → Plants → Rhizosphere	21.57%
Rhizoplane	Host-Associated → Plants → Rhizoplane	3.92%
Freshwater	Environmental → Aquatic → Freshwater	2.94%
Roots	Host-Associated → Plants → Roots	2.94%
Sediment	Environmental → Aquatic → Sediment	0.98%
Digestive System	Host-Associated → Human → Digestive System	0.98%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	54.90%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	12.75%
Loam	Environmental → Terrestrial → Soil → Loam	11.76%
Soil	Host-Associated → Plants → Rhizosphere → Soil	8.82%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	2.94%
Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere	2.94%
Ice	Environmental → Aquatic → Freshwater → Ice	1.96%
Sediment	Environmental → Aquatic → Freshwater → Sediment	0.98%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	0.98%
Large Intestine	Host-Associated → Human → Digestive System → Large Intestine	0.98%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	0.98%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	31.37%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	12.75%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	8.82%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	8.82%
Permafrost	Environmental → Terrestrial → Soil → Unclassified → Permafrost	6.86%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	5.88%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	4.90%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	3.92%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	2.94%
Unclassified	Environmental → Aquatic → Freshwater → Ice → Unclassified	1.96%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	1.96%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	1.96%
Soil	Host-Associated → Plants → Roots → Rhizosphere → Soil	1.96%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	0.98%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	0.98%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	0.98%
Fecal	Host-Associated → Human → Digestive System → Large Intestine → Fecal	0.98%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	0.98%
Unclassified	Host-Associated → Plants → Roots → Rhizosphere → Unclassified	0.98%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	15.69%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	10.78%
Permafrost	Environmental → Terrestrial → Soil → Unclassified → Permafrost → Permafrost	6.86%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	6.86%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	3.92%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	3.92%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	2.94%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	2.94%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	2.94%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	2.94%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Agricultural Soil	2.94%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Rhizosphere	2.94%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Arabidopsis Rhizosphere	2.94%
Polar Desert Sand	Environmental → Aquatic → Freshwater → Ice → Unclassified → Polar Desert Sand	1.96%
Grass Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grass Soil	1.96%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	1.96%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	1.96%
Switchgrass Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere → Soil → Switchgrass Rhizosphere	1.96%
Groundwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Groundwater Sediment	0.98%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	0.98%
Surface Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil	0.98%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Corn, Switchgrass And Miscanthus Rhizosphere	0.98%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	0.98%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	0.98%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	0.98%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	0.98%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	0.98%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	0.98%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	0.98%
Host-Associated	Host-Associated → Human → Digestive System → Large Intestine → Fecal → Host-Associated	0.98%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	0.98%
Arabidopsis Thaliana Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Thaliana Rhizosphere	0.98%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	0.98%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	0.98%
Tabebuia Heterophylla Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere → Unclassified → Tabebuia Heterophylla Rhizosphere	0.98%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	0.98%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.98%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere	0.98%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	0.98%
Avena Fatua Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Avena Fatua Rhizosphere	0.98%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2170459006	Grass soil microbial communities from Rothamsted Park, UK - March 2009 indirect in plug lysis (for fosmid construction) 0-10cm	Environmental	Open in IMG/M
2170459009	Grass soil microbial communities from Rothamsted Park, UK - July 2009 indirect DNA Tissue lysis 0-10cm	Environmental	Open in IMG/M
3300001537	Permafrost active layer microbial communities from McGill Arctic Research Station, Canada - (A20-65 cm-11A)- 1 week illumina	Environmental	Open in IMG/M
3300002568	Grasslands soil microbial communities from Hopland, California, USA - 2	Environmental	Open in IMG/M
3300004081	Grasslands soil microbial communities from Hopland, California, USA - 2 (version 2)	Environmental	Open in IMG/M
3300004157	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - - Combined assembly of AARS Block 2	Environmental	Open in IMG/M
3300004463	Combined assembly of Arabidopsis thaliana microbial communities	Host-Associated	Open in IMG/M
3300004480	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 4	Environmental	Open in IMG/M
3300004643	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Combined assembly of AARS Block 3	Environmental	Open in IMG/M
3300004803	Switchgrass rhizosphere and bulk soil microbial communities from Kellogg Biological Station, Michigan, USA for expression studies - soil CB-2 (Metagenome Metatranscriptome)	Host-Associated	Open in IMG/M
3300005176	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_128	Environmental	Open in IMG/M
3300005181	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_127	Environmental	Open in IMG/M
3300005329	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG	Environmental	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005338	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2	Host-Associated	Open in IMG/M
3300005339	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG	Host-Associated	Open in IMG/M
3300005435	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG	Environmental	Open in IMG/M
3300005441	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG	Environmental	Open in IMG/M
3300005445	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-3 metaG	Environmental	Open in IMG/M
3300005535	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.2-3L metaG	Environmental	Open in IMG/M
3300005537	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen01_05102014_R1	Environmental	Open in IMG/M
3300005547	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-3 metaG	Environmental	Open in IMG/M
3300005574	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_143	Environmental	Open in IMG/M
3300005981	Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S5T2R1	Host-Associated	Open in IMG/M
3300006804	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA AS200	Environmental	Open in IMG/M
3300009012	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_159	Environmental	Open in IMG/M
3300009098	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG	Host-Associated	Open in IMG/M
3300009148	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG	Host-Associated	Open in IMG/M
3300009174	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG	Host-Associated	Open in IMG/M
3300009551	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG	Host-Associated	Open in IMG/M
3300010326	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Wat_20cm_2_24_1 metaG	Environmental	Open in IMG/M
3300011271	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h3.4B metaG	Environmental	Open in IMG/M
3300012011	Permafrost microbial communities from Nunavut, Canada - A30_65cm_6M	Environmental	Open in IMG/M
3300012187	Polar desert sand microbial communities from Dry Valleys, Antarctica - metaG UQ448 (21.06)	Environmental	Open in IMG/M
3300012205	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_100_16 metaG	Environmental	Open in IMG/M
3300012207	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_115_16 metaG	Environmental	Open in IMG/M
3300012210	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_60_16 metaG	Environmental	Open in IMG/M
3300012211	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_40_16 metaG	Environmental	Open in IMG/M
3300012350	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_60_16 metaG	Environmental	Open in IMG/M
3300012351	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_100_16 metaG	Environmental	Open in IMG/M
3300012356	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_40_16 metaG	Environmental	Open in IMG/M
3300012360	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_113_16 metaG	Environmental	Open in IMG/M
3300012362	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_80_16 metaG	Environmental	Open in IMG/M
3300012469	Combined assembly of Soil carbon rhizosphere	Host-Associated	Open in IMG/M
3300012532	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_80_16 metaG	Environmental	Open in IMG/M
3300012684	Polar desert sand microbial communities from Dry Valleys, Antarctica - metaG UQ279 (21.06)	Environmental	Open in IMG/M
3300012903	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S134-311R-1	Environmental	Open in IMG/M
3300012911	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S088-202R-2	Environmental	Open in IMG/M
3300012916	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S213-509R-2	Environmental	Open in IMG/M
3300012951	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_226_MG	Environmental	Open in IMG/M
3300012958	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_221_MG	Environmental	Open in IMG/M
3300012960	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_231_MG	Environmental	Open in IMG/M
3300012976	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Wat_40cm_5_0_1 metaG	Environmental	Open in IMG/M
3300012984	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_247_MG	Environmental	Open in IMG/M
3300012989	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_237_MG	Environmental	Open in IMG/M
3300013045	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5pm-2 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300013296	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2-5 metaG	Host-Associated	Open in IMG/M
3300013307	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG	Host-Associated	Open in IMG/M
3300013765	Permafrost microbial communities from Nunavut, Canada - A30_80cm_6M	Environmental	Open in IMG/M
3300013768	Permafrost microbial communities from Nunavut, Canada - A35_65cm_0M	Environmental	Open in IMG/M
3300013772	Permafrost microbial communities from Nunavut, Canada - A10_80_0.25M	Environmental	Open in IMG/M
3300014056	Permafrost microbial communities from Nunavut, Canada - A20_5cm_0M	Environmental	Open in IMG/M
3300014325	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG	Host-Associated	Open in IMG/M
3300014827	Permafrost microbial communities from Nunavut, Canada - A3_80cm_18M	Environmental	Open in IMG/M
3300015371	Combined assembly of cpr5 and col0 rhizosphere and soil	Host-Associated	Open in IMG/M
3300015372	Soil combined assembly	Host-Associated	Open in IMG/M
3300017656	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_40cm_5_11112015	Environmental	Open in IMG/M
3300017792	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S4-5 metaG	Host-Associated	Open in IMG/M
3300018078	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_60_coex	Environmental	Open in IMG/M
3300018429	Populus adjacent soil microbial communities from riparian zone of Shoshone River, Wyoming, USA - 504 T	Environmental	Open in IMG/M
3300018469	Populus adjacent soil microbial communities from riparian zone of Weber River, Utah, USA - 320 T	Environmental	Open in IMG/M
3300018476	Populus adjacent soil microbial communities from riparian zone of Yellowstone River, Montana, USA - 531 T	Environmental	Open in IMG/M
3300019263	Metatranscriptome of groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM4_5 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300019888	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? L1c2	Environmental	Open in IMG/M
3300021968	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? L3c1	Environmental	Open in IMG/M
3300024283	Soil microbial communities from Purdue University Martell Research Forest, Indiana, United States - CNK11	Environmental	Open in IMG/M
3300025927	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025929	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG (SPAdes)	Environmental	Open in IMG/M
3300025934	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025937	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300028577	Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-8-21 metaG	Host-Associated	Open in IMG/M
3300028800	Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-26 metaG	Host-Associated	Open in IMG/M
3300028828	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_202	Environmental	Open in IMG/M
3300030336	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 12C_Control_Day1	Environmental	Open in IMG/M
3300031231	Coassembly Site 11 (all samples) - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031235	Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-19-19 metaG	Host-Associated	Open in IMG/M
3300031753	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM2C_515	Environmental	Open in IMG/M
3300031938	Soil microbial communities from UC Gill Tract Community Farm, Albany, California, United States - DLSLS.C.R1	Environmental	Open in IMG/M
3300032001	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082 (v2)	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
L01_00238540	2170459006	Grass Soil	TLVPPRPCGVYARHWLPVARFRGPGRYTITLRATDKSGLTSLPARRTFSHG
F47_06614770	2170459009	Grass Soil	AYTRHWIPAARFRGPGRYTITLRATDKSGLTSLPARRTFSHG
A2065W1_107837361	3300001537	Permafrost	TTLVPPRPCGVYTRHWTPSSRFRRTGSYGYTRARDKSRLASLPAKRTFTHG*
C688J35102_1181451562	3300002568	Soil	RLAPQPCGVYTRNWVPAPRFRGHGRYTITLRATDKSGSTSVPVKRTFFR*
Ga0063454_1004257651	3300004081	Soil	TESKAGRGTFTHRFSTLVPPQSCGVYTRSWVPAPKFRGHGRYTITLRARDTSGQTSLAARRSFSR*
Ga0062590_1022439511	3300004157	Soil	VYTRNWLPATRFRGPGKYTVTLRARDKSGLTSLPARRTFNR*
Ga0063356_1052339641	3300004463	Arabidopsis Thaliana Rhizosphere	VPPRPCGVYTRHWLPATRFRGHGRYTVTLRATDKSGLTSLPAKRTFTR*
Ga0062592_1007316451	3300004480	Soil	RFATRVPPRPCGAYTRSWLTPPSFRGPGRYTITLRARDTSGRLSAPASRTFRRH*
Ga0062591_1003224201	3300004643	Soil	APRPCGVYTRNWLPATRFRGPGKYTVTLRARDKSGLTSLPARRTFNR*
Ga0062591_1005083431	3300004643	Soil	FSTLTPPRPCGVYTRNWLPAQRFRGPGRYTVTLSARDKSGRTSLPARKTFTLR*
Ga0058862_128470401	3300004803	Host-Associated	VYTRHWTPAARFRGPGRYTLTLRARDKSGLTSLPAHRSFSRG*
Ga0066679_100684925	3300005176	Soil	VYTRHWLPALRFRGPGRFTIALRAIDKSGLSSTTARRTFSHG*
Ga0066678_103982941	3300005181	Soil	VYTRHWTPVARFRGPGRYTVTLRARDKSGLTSLPARRSFSHG*
Ga0070683_1010213121	3300005329	Corn Rhizosphere	AAPRPCGVYTRHWTPAARFQGPGRYTVTLKARDKSGFTSLAAHRTFSHG*
Ga0066388_1052661231	3300005332	Tropical Forest Soil	VRSFTRRFSTLVPPRPCGVYTRSWLPAPRFRGDGRYTITLRARDKSGLTSRPARRTFVLSV*
Ga0068868_1010775471	3300005338	Miscanthus Rhizosphere	RRFTTLVAPKPCGVYTRHWTPVARFRGPGRYTVTLKARDKSGLTSLPAKRTFSR*
Ga0070660_1000306211	3300005339	Corn Rhizosphere	ATLVPPRPCGVYTRHWLPVARFRGPGTYTLTLRATDKSGLTSLPARRTFSHG*
Ga0070714_1003999671	3300005435	Agricultural Soil	TRRFATLVPPRPCGVYTRHWVPVARFRGPGRYTLTLSATDKSGLTSLPARRTFSHG*
Ga0070700_1017040241	3300005441	Corn, Switchgrass And Miscanthus Rhizosphere	PSYTRRFSTLVAPQPCGVYTRNWVPAPRFRGNGRYTITLKARDKSGSTSAAVHRTLFR*
Ga0070708_1018753761	3300005445	Corn, Switchgrass And Miscanthus Rhizosphere	TRRFTTLAPPRPCGVYTRHWTPAARFRGPGSFTVTLSARDMSGLTSAASHRTFSHG*
Ga0070684_1002352713	3300005535	Corn Rhizosphere	SYSRSFATLVPPRPCGVYTRHWLPVARFRGPGTYTLTLRATDKSGLTSLPARRTFSHG*
Ga0070684_1005544322	3300005535	Corn Rhizosphere	TLVPPRPCGVYTRHWLPVTRFRGPGRYTLTLRATDKSGLTSLPARRSFSHG*
Ga0070730_109955772	3300005537	Surface Soil	PAARFRGPGRYTLTLRTTDKSGLTSLPARRTFSHG*
Ga0070693_1004112411	3300005547	Corn, Switchgrass And Miscanthus Rhizosphere	VYTRHWIPLARFRGPGRYTLTLRARDKSGLTSLPARRSFSRG*
Ga0066694_104744861	3300005574	Soil	HWLPAARFRGPGRYTITLRATDKSGLTSLPARRTFSHG*
Ga0081538_102828941	3300005981	Tabebuia Heterophylla Rhizosphere	RFATRVPPRPCGAYTRSWLPAQRFRGPGRYTFTLRARDASGRTSAPARRTYRR*
Ga0079221_115990521	3300006804	Agricultural Soil	PCGVYTRHWLPAARFRGPGRFTITLRARDKSGLTSLPARRTFNHG*
Ga0066710_1025611312	3300009012	Grasslands Soil	PGRLSYTRRFSTLIPPRPCGVYTRHWTPAPRFRGPGRYTITLRARDKSGLTSLPARRTFIRH
Ga0105245_101224374	3300009098	Miscanthus Rhizosphere	LIAPKPCGVYTRHWIPLARFRGPGRYTLTLRARDKSGLTSLPARRSFSRG*
Ga0105245_113418711	3300009098	Miscanthus Rhizosphere	GVYTRHWTPVARFRGHGRYTVSLKARDKSGLTSATAKRTFSR*
Ga0105245_118793522	3300009098	Miscanthus Rhizosphere	YTRRFSTLVAPQPCGVYTRNWVPAPRFRGGGRYTITLKARDKSGSTSAAVHRTLFR*
Ga0105243_131116041	3300009148	Miscanthus Rhizosphere	RPGRLSYTRRFSTLVAPKPCGVYTRNWMPAQRFRGSGKYTLVLRARDKSGLTSTMAQSTFVR*
Ga0105241_110169082	3300009174	Corn Rhizosphere	RFTTLIAPKPCGVYTRHWIPLARFRGPGRYTLTLRARDKSGLTSLPARRSFSRG*
Ga0105241_111698822	3300009174	Corn Rhizosphere	SYTRRFTTLAAPRPCGVYTRHWTPAARFQGPGRYTVTLKARDKSGFTSLAAHRTFSHG*
Ga0105241_123460961	3300009174	Corn Rhizosphere	LVAPQPCGVYTRNWVPAPRFRGHGRYTITLKARDKSGSTSAAVHRTFFR*
Ga0105238_105895442	3300009551	Corn Rhizosphere	PCGVYTRHWLPVARFRGPGRYTVTLRATDKSGLTSLPARRTFTHG*
Ga0134065_104446772	3300010326	Grasslands Soil	KLSYTRRFTTLVPPRPCGVYTRHWLPASRFRGPGRFTITLRARDKSGLTSLPVRRSFTHG
Ga0137393_111565342	3300011271	Vadose Zone Soil	SRPGKLPYTRHFATLVPPRPCGVYSRHWIPVARFRGPGRYTLTLRATDKSGLTSLPARRTFSHG*
Ga0120152_11653451	3300012011	Permafrost	PPRPFTPLAPPRPGVFSPRHWTPAARFRGPGKYSYTLRARDKSGLTSLPAKRTFTHG*
Ga0136622_102887211	3300012187	Polar Desert Sand	LSYTRRFTTLSPPRPCGVYTRHWLPAARFRGPGRYTVTLRARDKSGLTSLPARRTFNR*
Ga0137362_109213103	3300012205	Vadose Zone Soil	GKLSYTRHFATLVPPRPCGAYTRHWLQLARFRGPGRYTVTLRATDKSGLTSLPARRTFSHG*
Ga0137381_116569881	3300012207	Vadose Zone Soil	TRHWLPVARFRGPGRYTLTLRATDKSGLTSLPARRTFSHG*
Ga0137378_113828932	3300012210	Vadose Zone Soil	SYTRHFATLVPPRPCGVYTRHWLPVARFRGPGPYTLTLRATDKSGLTSLPARRTFTHG*
Ga0137377_102664781	3300012211	Vadose Zone Soil	WLPVARFRGPGRYTLTLRATDKSGLTSLPARRTFSHG*
Ga0137372_109419422	3300012350	Vadose Zone Soil	FATLVPPQPCGVYTRHWLPATRFRGPGRFTITIRARAKSGLTSLPARRSFSHG*
Ga0137386_107945613	3300012351	Vadose Zone Soil	VLSHARRFTTLVAPKPCGVYTRHWIPAARFRGPGRYTLTLRATDKSGLTSLPARRTFSHG
Ga0137371_111455583	3300012356	Vadose Zone Soil	VYTRHWLPVARFRGPGRYTLTLRARDKSGFTSLPARRSFSRG*
Ga0137375_106043701	3300012360	Vadose Zone Soil	PCGVYARHWTPVARFRGPGSYTLTLRARDKSGLTSLPARRTFSHG*
Ga0137361_112890512	3300012362	Vadose Zone Soil	RNFATLVPPRPCGVYTRHWLPAARFRGPGRYTVTLRATDKSGLTSLPARRTFSHG*
Ga0150984_1213821461	3300012469	Avena Fatua Rhizosphere	TRHWTPVARFRGHGTYTVTLKARDKSGLTSIPAKRTFSR*
Ga0137373_106971532	3300012532	Vadose Zone Soil	GVYSRHWLPVARFRGPGRYTLTLRAADKSGLISLPARRTFSHG*
Ga0136614_101540783	3300012684	Polar Desert Sand	YTRNWLPVLRFRGPGRYTVTLRARDTSGLTSAAASRTFNR*
Ga0157289_103554391	3300012903	Soil	SRPNRASYTRRFSTLTPPRPCGVYTRNWLPAQRFRGPGRYTVTLSARDKSGRTSLPARKTFTLR*
Ga0157301_103414402	3300012911	Soil	RRFSTIIPPQPCGVYTRNWVPSLRFRHGRYTVTLRARDKSALTSLPAKKTFFRR*
Ga0157310_100219201	3300012916	Soil	SYTRRFTTLVAPKPCGVYTRHWTPVARFRGPGRYTVTLKARDKSGLTSLPAKRTFSR*
Ga0164300_101217801	3300012951	Soil	TTLAAPRPCGVYTRHWTPAARFRGPGRYTVTLKARDKSGFTSLAAHRTFSHG*
Ga0164300_111540582	3300012951	Soil	VATRVPPRPCGAYTRSWLPAKRFRGAGRYTIALQARDSDGLTSSVVRRTFRRA*
Ga0164299_115215151	3300012958	Soil	TLVAPKPCGVYTRNWMPAPRFRGSGKYTLVLRARDKSGLTSTMAQSTFVR*
Ga0164301_117921613	3300012960	Soil	GRLSYTRRFSTLVAPKPCGVYTRNWMPAPRFRGSGKYTLVLRARDKSGLTSSMVRSTFVR
Ga0134076_105210481	3300012976	Grasslands Soil	TRRFATLVPPRPCGVYTRHWLQLARFRGPGRYTVTLRATDKSGLTSLPARRTFSHG*
Ga0164309_116812582	3300012984	Soil	RGFATLVPPRPCGVYTRHWLPVARFRGPGSYTLTLRATDKSGLTSLPARRTFSHG*
Ga0164305_104910161	3300012989	Soil	RPCGVYTRHWTPAARFRGPGRFTVTLKARDKSGLTSLPARRTFSRG*
Ga0154016_1401842	3300013045	Corn, Switchgrass And Miscanthus Rhizosphere	LVAPKPCGVYTRHWTPAARFRGPGRYTLTLRARDKSGLTSLPAHRSFSRG*
Ga0157374_102824183	3300013296	Miscanthus Rhizosphere	GKLSYTRRFTTLAAPRPCGVYTRHWTPATRFRGPGSFTVTLSARDMSGLTSATSHRTFSHG*
Ga0157372_124175402	3300013307	Corn Rhizosphere	WTPAARFQGPGRYTVTLKARDKSGFTSLAAHRTFSHG*
Ga0120172_10198631	3300013765	Permafrost	TLVAPRPCGVYTRHWIPVARFRGPGRFSVTLKARDKSGLTSLPARRSFTRG*
Ga0120155_12155621	3300013768	Permafrost	HWLPVARFRGPGRYTLTLRATDKSGLTSLPARRTFSHG*
Ga0120158_102784541	3300013772	Permafrost	CGVYTRHWLPVARFRGPGRYTFTLWATDKSGFTSLPARRTFSHG*
Ga0120125_10933653	3300014056	Permafrost	VYTRHWTPVARFRSPGRFTVTLKARDKSGFTSLPASRSFSRG*
Ga0163163_106835883	3300014325	Switchgrass Rhizosphere	SYTRRFTTLVAPKPCGVYTRHWTPVARFQGHGTYTVTLKARDKSGLTSLPAKRTFSR*
Ga0163163_116002922	3300014325	Switchgrass Rhizosphere	TLAAPRPCGVYTRYWTPVSRFRGHGRYTVTLKARDTSGFTSAAARRTFSR*
Ga0120171_11103032	3300014827	Permafrost	PCGAYTRHWLQLARFRGPGRYTLTLRATDKSGLTSLPARRTFSHG*
Ga0132258_119639641	3300015371	Arabidopsis Rhizosphere	FSTLVAPRPCGVYSRHWRLVQRFRGPGRVIVTLKARDKSGDTSAAARRSFSRG*
Ga0132256_1005217102	3300015372	Arabidopsis Rhizosphere	RFSTLIPPRPCGVYTRNWLPAQRFRGPGRYTITLRARDVSGRTSLPATRTFRH*
Ga0132256_1017577161	3300015372	Arabidopsis Rhizosphere	PKPCGVYTRHWTPVARFRGHGTYTVTLKARDKSGLTSLPAKRTFSR*
Ga0132256_1030601752	3300015372	Arabidopsis Rhizosphere	SYTRRFSTLIPPRPCGVYTRNWLPAERFRGPGRYTVTLRARDKSGLTSLPARRSFSR*
Ga0134112_105218692	3300017656	Grasslands Soil	VYTRHWTPVPRFQGHGRYTVTLKARDKSGFTSLPAKRSFSR
Ga0163161_109777811	3300017792	Switchgrass Rhizosphere	WTPVARFQGHGTYTVTLKARDKSGLTSLPAKRTFSR
Ga0184612_102392631	3300018078	Groundwater Sediment	SRPNRLSYTRRFTTLTPPRPCGVYTRHWLPALRFRGPGRYTVTLRARDKSGLTSLPARRTFNR
Ga0190272_126520391	3300018429	Soil	TLTPPRPCGVYTRNWLPALRFRGPGRYTVTLRARDKSGLTSLPARRTFNR
Ga0190270_131240421	3300018469	Soil	RRFTTLVPPRPCGVYTRNWLPVLRFRGPGRYTVTLRARDTSGLTSAAASRTFIRR
Ga0190274_100260031	3300018476	Soil	RRFTTLVAPKPCGVYTRHWTPVARFRGPGRYTVTLKARDKSGLTSLPAKRTFSR
Ga0190274_110731401	3300018476	Soil	TRRFTTLVAPKPCCVYTRHWTPVARFRGHGTYTVTLKARDKSGLTSLPAKRTFSR
Ga0184647_10309441	3300019263	Groundwater Sediment	PKPCGVYTRHWTPVARFRGHGRYTVTLKARDKSGLTSLPAKRTFSR
Ga0193751_10449235	3300019888	Soil	ATVVPPRPCGVYTRHWLPAARFRGPGRYTLTLRATDKSGLTSLPARRTFSHG
Ga0193698_10224891	3300021968	Soil	LAAPRPCGVYTRHWTPAARFRGPGRFTVTLKARDKSGFTSLASHRTFSHG
Ga0247670_10488061	3300024283	Soil	WIPAARFRGPGRYTITLRATDKSGLTSLPARRTFSHG
Ga0207687_109264952	3300025927	Miscanthus Rhizosphere	RHWTPVSRFRGHGRYTVTLKARDTSGFTSAAARRTFSR
Ga0207687_111242571	3300025927	Miscanthus Rhizosphere	TRRFSTLAAPNPCGVYTRHWTPVARFRGHGRYTVSLKARDKSGLTSATAKRTFSR
Ga0207664_104046372	3300025929	Agricultural Soil	TRRFATLVPPRPCGVYTRHWVPVARFRGPGRYTLTLSATDKSGLTSLPARRTFSHG
Ga0207664_115660701	3300025929	Agricultural Soil	VAVPFERFTTLAAPRPCGVYTRHWTPAARFQGPGRYTVTLQARDRQGARSPARSRTLTHR
Ga0207686_110793361	3300025934	Miscanthus Rhizosphere	TDTRPGRLSYTRRFSTLVAPKPCGVYTRNWMPAPRFRGSGKYTLVLRARDKSGLTSTMAQSTFVR
Ga0207669_118258952	3300025937	Miscanthus Rhizosphere	RLSYTRRFSTLVAPKPCGVYTRNWMPAPRFRGSGKYTLVLRARDKSGLTSTMAQSTFVR
Ga0265318_101506901	3300028577	Rhizosphere	TRHWLPVARFRGPGRYTLTLRATDKSGLTSLPARRTSTHG
Ga0265338_109224332	3300028800	Rhizosphere	ASYTRHFATFVPPRPCGVYARHWLPVARFRGSGTYTLTLRATDKSGLTSPLVRRTSTHG
Ga0307312_105040571	3300028828	Soil	TRRFATLVPPRPCGVYARHWLPVARFRGPGRYTLTLRAADKSGLVSLPARRTFSHG
Ga0247826_117076741	3300030336	Soil	CGVYTRSWLPAPRFRGGGRYTITLRARDKSGLTSAPARRTFVLSV
Ga0170824_1025198872	3300031231	Forest Soil	YARHWLPVARFRGPGRFIVTLRAADKSGLVSLPARRSFSHG
Ga0265330_100834461	3300031235	Rhizosphere	TLVPPRPCGVYTRHWLPVARFRGPGRYTLTLRATDKSGLTSLPARRTSTHG
Ga0307477_108010452	3300031753	Hardwood Forest Soil	PGKASYSRNFATLAPPQPCGVYARHWVPAARFRGAGRYTVTLTATDKSGLTSVPARRSFSRG
Ga0308175_1005827393	3300031938	Soil	ATLVPPRACGVYTRHWLPVTRFRGPGRYTLTLKATEKSGLTSLPPRRTFSHG
Ga0306922_119471622	3300032001	Soil	RRFTTLVPPRPCGVYTRHWIPATRFRGPGRYTLTLRARDKSGSTSLPARRTFSHGA

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F100674

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences