Sample 3300013022

3300013022: Fungus gardens microbial communities from leaf cutter ant in Botucatu, State of S?o Paulo, Brazil - Atta bisphaerica ABBM3

Overview

Basic Information
IMG/M Taxon OID	3300013022 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0121620 \| Gp0177535 \| Ga0157368
Sample Name	Fungus gardens microbial communities from leaf cutter ant in Botucatu, State of S?o Paulo, Brazil - Atta bisphaerica ABBM3
Sequencing Status	Permanent Draft
Sequencing Center	DOE Joint Genome Institute (JGI)
Published?	N
Use Policy	Open

Dataset Contents
Total Genome Size	185710356
Sequencing Scaffolds	46
Novel Protein Genes	53
Associated Families	8

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Basidiomycota → Agaricomycotina → Agaricomycetes	2
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Basidiomycota → Agaricomycotina → Agaricomycetes → Agaricomycetidae → Agaricales → Agaricaceae	3
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Basidiomycota → Agaricomycotina → Agaricomycetes → Agaricomycetidae → Agaricales → Agaricaceae → Leucoagaricus → Leucoagaricus leucothites	5
All Organisms → cellular organisms → Eukaryota	1
All Organisms → Viruses → Predicted Viral	1
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Basidiomycota	1
Not Available	29
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Basidiomycota → Agaricomycotina → Agaricomycetes → Agaricomycetidae → Agaricales → Agaricaceae → Leucoagaricus	1
All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → PACMAD clade → Panicoideae	1
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Basidiomycota → Agaricomycotina → Agaricomycetes → Agaricomycetidae → Agaricales → Agaricaceae → Agaricus → Agaricus bisporus → Agaricus bisporus var. burnettii	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Enterobacterales → Enterobacteriaceae → Salmonella → unclassified Salmonella → Salmonella sp. zj-f54	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
Name	Characterization Of Biomass-Degrading Enzymes From Insect-Associated, Soil, And Chicken Feces Microbial Communities
Type	Host-Associated
Taxonomy	Host-Associated → Fungi → Mycelium → Unclassified → Unclassified → Fungus Garden → Characterization Of Biomass-Degrading Enzymes From Insect-Associated, Soil, And Chicken Feces Microbial Communities

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	Unclassified
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline)

Location Information
Location	Brazil: Botucatu, State of Sao Paulo
Coordinates	Lat. (^o)	-22.847	Long. (^o)	-48.434	Alt. (m)	N/A	Depth (m)	N/A
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F002974	Metagenome / Metatranscriptome	516	Y
F010740	Metagenome	300	Y
F022340	Metagenome / Metatranscriptome	214	Y
F036993	Metagenome	169	Y
F061597	Metagenome / Metatranscriptome	131	Y
F080707	Metagenome	114	Y
F091073	Metagenome	108	Y
F093008	Metagenome	106	Y

Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
Ga0157368_1002668	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Basidiomycota → Agaricomycotina → Agaricomycetes	6540	Open in IMG/M
Ga0157368_1002685	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Basidiomycota → Agaricomycotina → Agaricomycetes → Agaricomycetidae → Agaricales → Agaricaceae	6527	Open in IMG/M
Ga0157368_1002939	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Basidiomycota → Agaricomycotina → Agaricomycetes → Agaricomycetidae → Agaricales → Agaricaceae → Leucoagaricus → Leucoagaricus leucothites	6132	Open in IMG/M
Ga0157368_1002985	All Organisms → cellular organisms → Eukaryota	6057	Open in IMG/M
Ga0157368_1009716	All Organisms → Viruses → Predicted Viral	2395	Open in IMG/M
Ga0157368_1011065	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Basidiomycota → Agaricomycotina → Agaricomycetes → Agaricomycetidae → Agaricales → Agaricaceae → Leucoagaricus → Leucoagaricus leucothites	2153	Open in IMG/M
Ga0157368_1012836	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Basidiomycota → Agaricomycotina → Agaricomycetes → Agaricomycetidae → Agaricales → Agaricaceae → Leucoagaricus → Leucoagaricus leucothites	1906	Open in IMG/M
Ga0157368_1014172	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Basidiomycota	1755	Open in IMG/M
Ga0157368_1016485	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Basidiomycota → Agaricomycotina → Agaricomycetes → Agaricomycetidae → Agaricales → Agaricaceae	1555	Open in IMG/M
Ga0157368_1017736	Not Available	1463	Open in IMG/M
Ga0157368_1018991	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Basidiomycota → Agaricomycotina → Agaricomycetes → Agaricomycetidae → Agaricales → Agaricaceae → Leucoagaricus → Leucoagaricus leucothites	1387	Open in IMG/M
Ga0157368_1019407	Not Available	1366	Open in IMG/M
Ga0157368_1021992	Not Available	1231	Open in IMG/M
Ga0157368_1022062	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Basidiomycota → Agaricomycotina → Agaricomycetes	1228	Open in IMG/M
Ga0157368_1027609	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Basidiomycota → Agaricomycotina → Agaricomycetes → Agaricomycetidae → Agaricales → Agaricaceae → Leucoagaricus → Leucoagaricus leucothites	1024	Open in IMG/M
Ga0157368_1029880	Not Available	959	Open in IMG/M
Ga0157368_1030328	Not Available	948	Open in IMG/M
Ga0157368_1030385	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Basidiomycota → Agaricomycotina → Agaricomycetes → Agaricomycetidae → Agaricales → Agaricaceae → Leucoagaricus	946	Open in IMG/M
Ga0157368_1032718	Not Available	890	Open in IMG/M
Ga0157368_1034821	Not Available	846	Open in IMG/M
Ga0157368_1038103	Not Available	788	Open in IMG/M
Ga0157368_1040592	Not Available	749	Open in IMG/M
Ga0157368_1043403	Not Available	712	Open in IMG/M
Ga0157368_1044318	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → PACMAD clade → Panicoideae	701	Open in IMG/M
Ga0157368_1044872	Not Available	694	Open in IMG/M
Ga0157368_1046636	Not Available	674	Open in IMG/M
Ga0157368_1048530	Not Available	655	Open in IMG/M
Ga0157368_1052245	Not Available	620	Open in IMG/M
Ga0157368_1056381	Not Available	586	Open in IMG/M
Ga0157368_1058650	Not Available	570	Open in IMG/M
Ga0157368_1060287	Not Available	559	Open in IMG/M
Ga0157368_1060692	Not Available	557	Open in IMG/M
Ga0157368_1061507	Not Available	552	Open in IMG/M
Ga0157368_1062945	Not Available	543	Open in IMG/M
Ga0157368_1063374	Not Available	541	Open in IMG/M
Ga0157368_1064185	Not Available	537	Open in IMG/M
Ga0157368_1064502	Not Available	535	Open in IMG/M
Ga0157368_1064754	Not Available	534	Open in IMG/M
Ga0157368_1065661	Not Available	529	Open in IMG/M
Ga0157368_1066630	Not Available	524	Open in IMG/M
Ga0157368_1068377	Not Available	515	Open in IMG/M
Ga0157368_1068913	Not Available	512	Open in IMG/M
Ga0157368_1070199	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Basidiomycota → Agaricomycotina → Agaricomycetes → Agaricomycetidae → Agaricales → Agaricaceae → Agaricus → Agaricus bisporus → Agaricus bisporus var. burnettii	506	Open in IMG/M
Ga0157368_1070490	Not Available	505	Open in IMG/M
Ga0157368_1070880	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Basidiomycota → Agaricomycotina → Agaricomycetes → Agaricomycetidae → Agaricales → Agaricaceae	503	Open in IMG/M
Ga0157368_1071465	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Enterobacterales → Enterobacteriaceae → Salmonella → unclassified Salmonella → Salmonella sp. zj-f54	501	Open in IMG/M

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0157368_1002668	Ga0157368_100266811	F093008	MKEALTELNAKAYVMTIKKEELLNQWLNEQLKAGLIVESKSRYAIPYFYIPKKDRSL*
Ga0157368_1002685	Ga0157368_10026854	F010740	MAFLDRKRNTDTSRNGCQIPMYQGGPLHEPYFIAIDNKNQVIIGPSKKIVAIHVVGELEVLV*
Ga0157368_1002939	Ga0157368_10029392	F080707	MELVDERISKLRGLLRVFLDETFTPSECLMFQDELFYKVLCKYVPDWCEGSGLPSEVIGEFEGTLVEFRPFFVDWVGMVCNLFSCLLSLADVLLSP*
Ga0157368_1002985	Ga0157368_10029859	F010740	VAATFLDRKHNTDTTRNRYQIHMFQGGPPHEPYFIAKDNKDKIIIGPSKKIVATHVVGELEVLV*
Ga0157368_1009716	Ga0157368_10097165	F036993	MYQGGPPHEPYFIAIDNRDQVIIGPNKKIVATHVVGELEVLI*
Ga0157368_1011065	Ga0157368_10110652	F080707	MELVDERIPKLRELLRVFPDETFPPSECLMFQDELFYDVLCEYVSHWCKGWGLPSEVIGEFEGTLEEFRPFFEDWVGMVCNLFQSLFSLADVLLPP*
Ga0157368_1012836	Ga0157368_10128362	F080707	MELVDEIIPKLRELLRVFPDETFTPSECLMFQDELFYDVLCKYVSDWCKGSGLPSEVIGEFEGALEEFRRFFVDWVGMVCNLF*
Ga0157368_1014172	Ga0157368_10141722	F010740	MAFVDKKRNTDTSRNGCQIPMYQGGPPHELYFIAIDNKDQAIIGPSKKIMATHMVGELEILV*
Ga0157368_1016485	Ga0157368_10164854	F010740	MVFVDKKRNTDTSRNGCQIPMYQGGPPHKPYFIAIDNKDQAIIGPSKKIVATHVVGELEILV*
Ga0157368_1017736	Ga0157368_10177363	F010740	VAMAFMERKYNMDIARNGLQIHMFQGGLPYKPYFIAIDNKNQVIIGSSKKIVAMHVVGELEVLV*
Ga0157368_1018991	Ga0157368_10189913	F080707	MELVDERIPKLRELLPVFPDETFLPSECLMFQDELFYDILCKYVSKWCKGSGLPSEVIGEFEDTLVEFRPFFVDWVGMVCNFFS
Ga0157368_1019407	Ga0157368_10194071	F036993	GPPHEPYFIAKDNKDQIIIGSSKKIVATHVVGELEVLV*
Ga0157368_1021992	Ga0157368_10219921	F010740	TTFLNRKHNTETARNGYQIHMFQGGPPHKPYFIAKNNKDQIIIGPSKKIVTMHVVGELEVLV*
Ga0157368_1022062	Ga0157368_10220622	F093008	MEEAPKELNAKAYTMILKEKEALNQWLDEQLKAELIVESKSRYIAPYFYIPKKDSSL*
Ga0157368_1024464	Ga0157368_10244641	F091073	MDQAQIMKREREDWLRLYHKTLKELETMIDVQRMAKNIKRLAEETNTILTEIEGMVLTTSISNKVINITNITQISEDLRYLVQSDMNKQVFQVQRILADELDHYKGKGNSYMDSNIKEIQELYMEEEKKEEKENSGK*
Ga0157368_1027609	Ga0157368_10276092	F080707	MELLDERIPKLWRLLRVFPDETFPPSECLMFQDELFYKVLCEYVSDWCKGWGLPSEVIGEFEGTLEEFRQFFVDWVGMVCNLF*
Ga0157368_1027832	Ga0157368_10278321	F036993	PMYQGGPPHEPYFIAIDNKDQAIIGPSKKIVATHMVGELEILV*
Ga0157368_1029880	Ga0157368_10298801	F010740	VATAFMERKYNMNTAKNGLQIHMFQGGPLHKPYFIAIDNKDQVIIGPSKKIVATHVVGELEVLV*
Ga0157368_1030328	Ga0157368_10303281	F010740	VTAFLDKKKNTDTARNGCQIPIYQGGPPHEPYFIAIDNRDRIIIGPSKKIIATHVVEELEVLI*
Ga0157368_1030385	Ga0157368_10303852	F010740	WKEVAMAFLDKKQNTDTSRNGYQIPMYQGGPPHKPYFIAIDNRDQVIIGPSKKIVATHVVRELEVLV*
Ga0157368_1031345	Ga0157368_10313451	F091073	MSFPNNSNNNNTFATAPTSPNPYISRKLNNMDQAQVMKKERENWERLYHKTLKGIETMIDIQRMTKDIKKLAEEANTTITEIEGTVLTASINNRTMNITNITQISEDLRYLVQSDMDEQTFQIQRMLANELDRYKGRGNNYVDTNIKEIQELY
Ga0157368_1032718	Ga0157368_10327181	F010740	MAFLDKKKNMDTSRNGYPIPMYRGGLPHEPYFIAINNQDQIIIGPSKKIVAMHMVGELEVMV*
Ga0157368_1034821	Ga0157368_10348211	F010740	KRNTDTARNGCQIPIYQGGPPHKPYFIAIDNKDQVIIGPSKKIVATYVVGELEVLV*
Ga0157368_1038103	Ga0157368_10381031	F010740	VDKKRNTDTARNGCQISMYQGGPPHEPYFIAIDNKDQVIIGPSKKIVATHVVGELEVLV
Ga0157368_1040592	Ga0157368_10405922	F010740	VATAFVERKHNTDIARNRFQIHMFQGGPPHEPYFIAIDNKDQVIIGPSKKIVAMHVVGELEVLV*
Ga0157368_1043403	Ga0157368_10434031	F010740	VFVDKKRNTDISRNGCQIPMYQGGPPYEPYFIAIDNKNQAIIGPSKKIVATHVVGELEILV*
Ga0157368_1044318	Ga0157368_10443181	F061597	VDCRNLKTLDKLTDQPGNLIPLDRAEVPDLSVSGDKFDLVGDDPHDPTTTSKPAAPMQSLNQLPVVTDLVDARSA*
Ga0157368_1044391	Ga0157368_10443911	F091073	MSFNNNNNYATAPTSSNPYISRKINNIDQALVMKREREDWTRLYHKTLKGLETMIDVQRMAKDIKKLAEEANTILTEVEGTILMASINNRTMNATSLTQILEDLQYLVQSNMDKRAFQIQRMLADELDRYKEKDNKYMEDNIKEIQELYMNEEINPVKGMVENEEVILV*
Ga0157368_1044872	Ga0157368_10448721	F010740	VTAFLNKKKNTDTARNGCQIPMYQGGPPHEPYFIAIDNRNQIIIGPSKKIVATHVVGELEVLI*
Ga0157368_1046636	Ga0157368_10466361	F010740	MTFLDRKYNTDTARNGYQIHMFQGGPPHEPYFIAKDNKDQIIIGPSKKIV
Ga0157368_1048530	Ga0157368_10485301	F010740	NTDTSRNGCQIPMYQGGPPHKPYFIAIDNKDQAIIGPSKKIVATHVVGELEILV*
Ga0157368_1052245	Ga0157368_10522451	F010740	WKEVVVAFMDKKRNTDTSRNRCQIPMYQGGPPHEPYFIAIDNKDQAIIGPSEKIVATYMVGELEVLV*
Ga0157368_1055685	Ga0157368_10556851	F091073	MIDVQKMLKDMKKIAEETSMTVTEIEGTILTASINNQTMNATNITQIAEDLRYLVQSDMDERVFQIQRMLADELDHYKGKGNDYVEGNIKEIQELYMNDESKEEKGAVENEEVILVRPYEVS
Ga0157368_1056381	Ga0157368_10563811	F010740	MAFMERKYNTDTARNGVQIHMFQGGPLHEPYFIAIDNKDQVIIGPSKKIVAMHVVEELEVLV*
Ga0157368_1058357	Ga0157368_10583572	F091073	MKREQEDWSRLYHKTLKGLETMIDIQRIMKDIKKLAEEANTTITEMEDTVLMASINNRVMNVTNITQISEDLQYLVQSDMDEQAFQIQRMLANELDRYKGRDNDYVDMNIKEIQELYI
Ga0157368_1058650	Ga0157368_10586501	F010740	TDTARNEFQIHMFQGGPLHEPYFIAIDNKDQVIIGPSKKIVATYVVGELEVLV*
Ga0157368_1060287	Ga0157368_10602871	F036993	GGPPHEPYLIAIDNKDQIIIVPSKQIVATYVVGELEVLV*
Ga0157368_1060692	Ga0157368_10606921	F010740	EQDPEFWKEVVVVFMDKKRNTDTSRNRCQIPMYQGGPPHEPYFIAIDNKNQAIIGPSKKIVATYMVGELEILV*
Ga0157368_1061507	Ga0157368_10615071	F080707	MELVDERISKLRELLRVFPDETFLPSECLMFQDELFYDILCKYVSDCCKGSGLPSEVIRGFQGTLEEFRPFFEDWVGMVCNLFSCLSSLADVLLSP*
Ga0157368_1062945	Ga0157368_10629451	F010740	TFLDRKYNTDTARNGYQIHMFQGGPPHEPYFIAKDNKDQIIIGPSKKIVATHVVGELEVLV*
Ga0157368_1063374	Ga0157368_10633741	F080707	MELVDERISKLRGLLRVFPDETFPPRECLMSQDELFYEVLCKYISNWYNGWGLPSEVIREFEGTLEEFRPFFMDWVGMVSNLF*
Ga0157368_1064185	Ga0157368_10641851	F010740	WKKVAMAFVDRKRNTDTSRNGHQIPMYQGGPPHEPYFIAIDNKNQVIIGPSKKIVATHVVGELEVLV*
Ga0157368_1064502	Ga0157368_10645022	F080707	VDERIPKLRELLPVFPDETFPPSECLMFRDELFYNGLCEYVSNWCKGSGLPSEVIEESEGTLGELRPLFEDWVGMVCNLFSCLSSLADILLSP*
Ga0157368_1064754	Ga0157368_10647542	F010740	MTFVDRKRNTDTSRNGHQIPMYQGGPPHEPYFIAIDNKDQVIIGPSKKIVATHMVGELEVLV*
Ga0157368_1065661	Ga0157368_10656611	F010740	MERKHNTDTARNGFQIHMFQGGPPHKPYFIAIDNKDQVIIGPSKKIVAM
Ga0157368_1066523	Ga0157368_10665231	F002974	VQRRPLEAPVHSGIIRRNNDVKRGRGKPNLTWEEAVKRDLRDWNIVRELALDRAAWKAAIHVPEP*
Ga0157368_1066630	Ga0157368_10666301	F010740	KEVAMAFVDRKRNTDTSRNGHQIPMYQGGPPHEPYFIAIDNKDQVIIGPSKKIVAMHVVGELEVLV*
Ga0157368_1068377	Ga0157368_10683771	F036993	ARNGYQIHMFQGGPPHKPYFIAKDNKDQIIIGPSKKIVATHMVGELEVLV*
Ga0157368_1068913	Ga0157368_10689131	F010740	KHNTNTARNGYQIHMFQGGPPHEPYFIAKDNKDQIIIGSSKKIVATHVVGELEVLV*
Ga0157368_1070199	Ga0157368_10701992	F093008	KINLMDEAPKELNTKAYAIILKEEEALNQWLDEQLKAGLIMESKLRYAVPCFYIPKKDSSL*
Ga0157368_1070490	Ga0157368_10704901	F010740	MDKKRNTDTSRNECQIPMYQGGPPHEPYFIAIDNKDQAIIGPSKKIVATHVVGELEILV*
Ga0157368_1070880	Ga0157368_10708802	F093008	LTEEAPKELNAKAYAMTLKEEEALNQWLDEQLKAGLIVESKSRYAAPCFYIPKK
Ga0157368_1071465	Ga0157368_10714651	F022340	PDTRFRNGSRAATKWRETTPNMSFGPKVVDWACSLRKNKKWF*

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

3300013022: Fungus gardens microbial communities from leaf cutter ant in Botucatu, State of S?o Paulo, Brazil - Atta bisphaerica ABBM3

Overview

Ecosystem and Geography

Associated Families

Associated Scaffolds

Sequences