3300012095: Attine ant fungus gardens microbial communities from Florida, USA - TSFL039 MetaG

Overview

Basic Information

• IMG/M Taxon OID: 3300012095
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0121619 | Gp0175764 | Ga0153955
• Sample Name: Attine ant fungus gardens microbial communities from Florida, USA - TSFL039 MetaG
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 49200391
• Sequencing Scaffolds: 4
• Novel Protein Genes: 5
• Associated Families: 5

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Eukaryota	2
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina → leotiomyceta → Eurotiomycetes	1
Not Available	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Attine Ant Fungus Gardens Microbial Communities From Various Locations In Usa
• Type: Host-Associated
• Taxonomy: Host-Associated → Fungi → Mycelium → Unclassified → Unclassified → Attine Ant Fungus Gardens → Attine Ant Fungus Gardens Microbial Communities From Various Locations In Usa

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Fungus → Fungus corpus

Location Information

• Location: USA: Florida, Wekiwa Springs
• Coordinates
  • Lat. (^o): 28.7103
  • Long. (^o): -81.4846
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F045048	Metagenome / Metatranscriptome	153	Y
F059521	Metagenome	133	Y
F059667	Metagenome / Metatranscriptome	133	Y
F079420	Metagenome	115	Y
F091807	Metagenome	107	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0153955_101721	All Organisms → cellular organisms → Eukaryota	3376
Ga0153955_102953	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina → leotiomyceta → Eurotiomycetes	1334
Ga0153955_107497	Not Available	598
Ga0153955_108610	All Organisms → cellular organisms → Eukaryota	553

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0153955_101721	Ga0153955_1017217	F079420	MLSSKRALQISGTLLAGFEKSTFLRHLQAPFNILHSLAESL*
Ga0153955_102953	Ga0153955_1029532	F045048	VFNKGNSKGFIASIPIGGHLAPNSIVGAKALWKKAQNIAKKNKASDIINKPTPIFNPL*
Ga0153955_107497	Ga0153955_1074971	F091807	LKANKSAACRRAIQRILAVVKKNFEDDKYKSDVEAEADFRQLVDRYEGCK*
Ga0153955_108610	Ga0153955_1086101	F059667	KGRTKCNAKNLFKVALLTEKPPHINSTISCPTHGIALIKLVITVAPHRDI*
Ga0153955_109892	Ga0153955_1098921	F059521	DVTHDCDLWDGEHHVTSLSSHPGYIENDARVIAFSVMCITCFIQKHSIEGCSIEQFPPILGIGSIMWQLFQTMSASGWDRFKISPTPNAPSLVEAMRTLYSPSVPEEPSPDVKMAVDEPVVEEVPFTTVTAKKHKGKDKALPSTNPQTLPQNAPPPSAVVSRAPPLQPAKK