NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Metagenome Family F091807

Metagenome Family F091807

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
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Overview

Basic Information
Family ID F091807
Family Type Metagenome
Number of Sequences 107
Average Sequence Length 62 residues
Representative Sequence VSTDFLDRLASQLRANKSAACRRAIQRILAVVKKNFEDGKYKNDVEAEADFRQLVGRDEGCK
Number of Associated Samples 60
Number of Associated Scaffolds 107

Quality Assessment
Transcriptomic Evidence No
Most common taxonomic group Bacteria
% of genes with valid RBS motifs 33.64 %
% of genes near scaffold ends (potentially truncated) 28.97 %
% of genes from short scaffolds (< 2000 bps) 78.50 %
Associated GOLD sequencing projects 49
AlphaFold2 3D model prediction Yes
3D model pTM-score0.81

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
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Most Common Taxonomy
Group Bacteria (53.271 % of family members)
NCBI Taxonomy ID 2
Taxonomy All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil
(64.486 % of family members)
Environment Ontology (ENVO) Unclassified
(57.009 % of family members)
Earth Microbiome Project Ontology (EMPO) Host-associated → Plant → Plant rhizosphere
(65.421 % of family members)



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Multiple Sequence Alignments

Select alignment to view:      


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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Globular Signal Peptide: No Secondary Structure distribution: α-helix: 52.22%    β-sheet: 0.00%    Coil/Unstructured: 47.78%
Feature Viewer
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Predicted 3D Structure

Structure Viewer
Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  
pTM-score: 0.81
Powered by PDBe Molstar

Structural matches with SCOPe domains

SCOP familySCOP domainRepresentative PDBTM-score
a.80.1.1: DNA polymerase III clamp loader subunits, C-terminal domaind1sxje11sxj0.75287
a.172.1.1: Helical scaffold and wing domains of SecAd1tf5a21tf50.70958
a.80.1.1: DNA polymerase III clamp loader subunits, C-terminal domaind1iqpa11iqp0.70379
f.72.1.1: Double antiporter-like subunits from respiratory complex Id4he8n_4he80.67253
e.79.1.0: automated matchesd4w8ka_4w8k0.67232


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Gene Neighborhood

Neighboring Pfam domains

Pfam IDName % Frequency in 107 Family Scaffolds
PF12844HTH_19 10.28
PF07238PilZ 4.67
PF00072Response_reg 3.74
PF01740STAS 3.74
PF01381HTH_3 3.74
PF09926DUF2158 2.80
PF01068DNA_ligase_A_M 2.80
PF027395_3_exonuc_N 2.80
PF00027cNMP_binding 1.87
PF00462Glutaredoxin 0.93
PF01872RibD_C 0.93
PF04679DNA_ligase_A_C 0.93
PF13520AA_permease_2 0.93
PF13424TPR_12 0.93
PF013675_3_exonuc 0.93
PF13560HTH_31 0.93
PF04909Amidohydro_2 0.93
PF00313CSD 0.93
PF13620CarboxypepD_reg 0.93
PF15631Imm-NTF2-2 0.93
PF03551PadR 0.93
PF05016ParE_toxin 0.93
PF13426PAS_9 0.93

Neighboring Clusters of Orthologous Genes (COGs)

COG IDNameFunctional Category % Frequency in 107 Family Scaffolds
COG02585'-3' exonuclease Xni/ExoIX (flap endonuclease)Replication, recombination and repair [L] 3.74
COG1793ATP-dependent DNA ligaseReplication, recombination and repair [L] 3.74
COG1423ATP-dependent RNA circularization protein, DNA/RNA ligase (PAB1020) familyReplication, recombination and repair [L] 2.80
COG0262Dihydrofolate reductaseCoenzyme transport and metabolism [H] 0.93
COG1695DNA-binding transcriptional regulator, PadR familyTranscription [K] 0.93
COG1733DNA-binding transcriptional regulator, HxlR familyTranscription [K] 0.93
COG1846DNA-binding transcriptional regulator, MarR familyTranscription [K] 0.93
COG1985Pyrimidine reductase, riboflavin biosynthesisCoenzyme transport and metabolism [H] 0.93


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Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:
NameRankTaxonomyDistribution
All OrganismsrootAll Organisms53.27 %
UnclassifiedrootN/A46.73 %

Visualization
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Associated Scaffolds


ScaffoldTaxonomyLengthIMG/M Link
3300001593|JGI12635J15846_10043847All Organisms → cellular organisms → Bacteria3463Open in IMG/M
3300002906|JGI25614J43888_10060220Not Available1110Open in IMG/M
3300002906|JGI25614J43888_10064529Not Available1057Open in IMG/M
3300002906|JGI25614J43888_10095650Not Available793Open in IMG/M
3300002907|JGI25613J43889_10021477Not Available1823Open in IMG/M
3300002907|JGI25613J43889_10122202All Organisms → cellular organisms → Bacteria661Open in IMG/M
3300002914|JGI25617J43924_10002556All Organisms → cellular organisms → Bacteria → Acidobacteria5074Open in IMG/M
3300002917|JGI25616J43925_10087548All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium1297Open in IMG/M
3300005467|Ga0070706_100394910All Organisms → cellular organisms → Bacteria1287Open in IMG/M
3300006755|Ga0079222_11498216All Organisms → cellular organisms → Bacteria → Acidobacteria632Open in IMG/M
3300007255|Ga0099791_10684523Not Available504Open in IMG/M
3300007258|Ga0099793_10151318Not Available1099Open in IMG/M
3300007265|Ga0099794_10002674All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae6637Open in IMG/M
3300007265|Ga0099794_10362049Not Available755Open in IMG/M
3300007265|Ga0099794_10383164All Organisms → cellular organisms → Bacteria734Open in IMG/M
3300007265|Ga0099794_10434573Not Available687Open in IMG/M
3300009038|Ga0099829_11023138Not Available685Open in IMG/M
3300009038|Ga0099829_11712001All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium517Open in IMG/M
3300009088|Ga0099830_10184836All Organisms → cellular organisms → Bacteria1623Open in IMG/M
3300009088|Ga0099830_11710089Not Available525Open in IMG/M
3300009089|Ga0099828_11916280Not Available520Open in IMG/M
3300009090|Ga0099827_10907236All Organisms → cellular organisms → Bacteria763Open in IMG/M
3300009090|Ga0099827_10917105Not Available759Open in IMG/M
3300009143|Ga0099792_11151056Not Available524Open in IMG/M
3300011269|Ga0137392_10543325All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium965Open in IMG/M
3300011269|Ga0137392_10983464Not Available693Open in IMG/M
3300011269|Ga0137392_11263602All Organisms → cellular organisms → Bacteria597Open in IMG/M
3300011269|Ga0137392_11384609All Organisms → cellular organisms → Bacteria562Open in IMG/M
3300011270|Ga0137391_10161349All Organisms → cellular organisms → Bacteria → Acidobacteria1954Open in IMG/M
3300011270|Ga0137391_10219865All Organisms → cellular organisms → Bacteria → Acidobacteria1650Open in IMG/M
3300011271|Ga0137393_10182778All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium1763Open in IMG/M
3300011271|Ga0137393_10614397All Organisms → cellular organisms → Bacteria932Open in IMG/M
3300011271|Ga0137393_11206426Not Available642Open in IMG/M
3300012095|Ga0153955_107497Not Available598Open in IMG/M
3300012096|Ga0137389_10388669All Organisms → cellular organisms → Bacteria1190Open in IMG/M
3300012096|Ga0137389_11036385Not Available703Open in IMG/M
3300012096|Ga0137389_11548948Not Available559Open in IMG/M
3300012189|Ga0137388_10744478Not Available909Open in IMG/M
3300012202|Ga0137363_10108636All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium2121Open in IMG/M
3300012202|Ga0137363_10783873All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium808Open in IMG/M
3300012203|Ga0137399_11230890Not Available630Open in IMG/M
3300012203|Ga0137399_11621100Not Available535Open in IMG/M
3300012205|Ga0137362_10090675Not Available2562Open in IMG/M
3300012205|Ga0137362_10347034Not Available1285Open in IMG/M
3300012205|Ga0137362_10424031Not Available1152Open in IMG/M
3300012205|Ga0137362_10777633Not Available821Open in IMG/M
3300012361|Ga0137360_10102147All Organisms → cellular organisms → Bacteria → Acidobacteria2195Open in IMG/M
3300012361|Ga0137360_10460076Not Available1079Open in IMG/M
3300012362|Ga0137361_10044423All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium3630Open in IMG/M
3300012582|Ga0137358_10755341Not Available649Open in IMG/M
3300012683|Ga0137398_10035624All Organisms → cellular organisms → Bacteria2859Open in IMG/M
3300012683|Ga0137398_10195546Not Available1332Open in IMG/M
3300012917|Ga0137395_10012458All Organisms → cellular organisms → Bacteria4702Open in IMG/M
3300012918|Ga0137396_10127807All Organisms → cellular organisms → Bacteria1837Open in IMG/M
3300012918|Ga0137396_10286129All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium1218Open in IMG/M
3300012918|Ga0137396_10806685All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium690Open in IMG/M
3300012918|Ga0137396_11021084Not Available597Open in IMG/M
3300012923|Ga0137359_10134087All Organisms → cellular organisms → Bacteria → Acidobacteria2203Open in IMG/M
3300012925|Ga0137419_10531155Not Available937Open in IMG/M
3300012927|Ga0137416_10568128All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium984Open in IMG/M
3300012927|Ga0137416_11019446Not Available740Open in IMG/M
3300012927|Ga0137416_11222377Not Available677Open in IMG/M
3300012929|Ga0137404_11004140Not Available763Open in IMG/M
3300012929|Ga0137404_11434058All Organisms → cellular organisms → Bacteria638Open in IMG/M
3300015264|Ga0137403_10250977Not Available1680Open in IMG/M
3300015264|Ga0137403_10336001Not Available1400Open in IMG/M
3300015264|Ga0137403_11189114Not Available608Open in IMG/M
3300020582|Ga0210395_10683844All Organisms → cellular organisms → Bacteria768Open in IMG/M
3300021088|Ga0210404_10000282All Organisms → cellular organisms → Bacteria29632Open in IMG/M
3300021088|Ga0210404_10000579All Organisms → cellular organisms → Bacteria18233Open in IMG/M
3300021088|Ga0210404_10000832All Organisms → cellular organisms → Bacteria14329Open in IMG/M
3300021088|Ga0210404_10011347All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium3664Open in IMG/M
3300021088|Ga0210404_10014689Not Available3264Open in IMG/M
3300021088|Ga0210404_10107546All Organisms → cellular organisms → Bacteria1415Open in IMG/M
3300021170|Ga0210400_10002943All Organisms → cellular organisms → Bacteria15316Open in IMG/M
3300021170|Ga0210400_10120705All Organisms → cellular organisms → Bacteria → Acidobacteria2092Open in IMG/M
3300024330|Ga0137417_1133311All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium1551Open in IMG/M
3300024330|Ga0137417_1287837All Organisms → cellular organisms → Bacteria1003Open in IMG/M
3300026304|Ga0209240_1008877All Organisms → cellular organisms → Bacteria3807Open in IMG/M
3300026304|Ga0209240_1121809All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium889Open in IMG/M
3300026304|Ga0209240_1130115Not Available840Open in IMG/M
3300026304|Ga0209240_1222774Not Available572Open in IMG/M
3300026319|Ga0209647_1005776All Organisms → cellular organisms → Bacteria → Acidobacteria9000Open in IMG/M
3300026320|Ga0209131_1001263All Organisms → cellular organisms → Bacteria → Acidobacteria17527Open in IMG/M
3300026320|Ga0209131_1213708Not Available866Open in IMG/M
3300026514|Ga0257168_1039407All Organisms → cellular organisms → Bacteria1024Open in IMG/M
3300026551|Ga0209648_10095360All Organisms → cellular organisms → Bacteria2450Open in IMG/M
3300026557|Ga0179587_10051967All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium2359Open in IMG/M
3300026557|Ga0179587_10480148Not Available815Open in IMG/M
3300026557|Ga0179587_10640018Not Available700Open in IMG/M
3300027591|Ga0209733_1024806Not Available1617Open in IMG/M
3300027603|Ga0209331_1027191All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium1478Open in IMG/M
3300027651|Ga0209217_1043397Not Available1374Open in IMG/M
3300027667|Ga0209009_1067556Not Available898Open in IMG/M
3300027671|Ga0209588_1014078All Organisms → cellular organisms → Bacteria2446Open in IMG/M
3300027671|Ga0209588_1136431Not Available781Open in IMG/M
3300027738|Ga0208989_10123426Not Available877Open in IMG/M
3300027846|Ga0209180_10509128All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium673Open in IMG/M
3300027862|Ga0209701_10476167All Organisms → cellular organisms → Bacteria682Open in IMG/M
3300027875|Ga0209283_10748741All Organisms → cellular organisms → Bacteria606Open in IMG/M
3300027903|Ga0209488_10265307All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium1286Open in IMG/M
3300027903|Ga0209488_10281682Not Available1243Open in IMG/M
3300028047|Ga0209526_10780830All Organisms → cellular organisms → Bacteria → Proteobacteria594Open in IMG/M
3300028536|Ga0137415_10353646Not Available1273Open in IMG/M
3300031820|Ga0307473_10193825All Organisms → cellular organisms → Bacteria1200Open in IMG/M
3300032174|Ga0307470_10902793Not Available694Open in IMG/M
3300032180|Ga0307471_101571915All Organisms → cellular organisms → Bacteria → Acidobacteria814Open in IMG/M



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Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:
HabitatTaxonomyDistribution
Vadose Zone SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil64.49%
Grasslands SoilEnvironmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil14.02%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil9.35%
Forest SoilEnvironmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil6.54%
Hardwood Forest SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil2.80%
Agricultural SoilEnvironmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil0.93%
Corn, Switchgrass And Miscanthus RhizosphereEnvironmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere0.93%
Attine Ant Fungus GardensHost-Associated → Fungi → Mycelium → Unclassified → Unclassified → Attine Ant Fungus Gardens0.93%

Visualization
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Associated Samples

Taxon OIDSample NameHabitat TypeIMG/M Link
3300001593Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM2_M2EnvironmentalOpen in IMG/M
3300002906Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_60cmEnvironmentalOpen in IMG/M
3300002907Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_40cmEnvironmentalOpen in IMG/M
3300002914Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_115cmEnvironmentalOpen in IMG/M
3300002917Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_100cmEnvironmentalOpen in IMG/M
3300005467Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaGEnvironmentalOpen in IMG/M
3300006755Agricultural soil microbial communities from Georgia to study Nitrogen management - GA PlitterEnvironmentalOpen in IMG/M
3300007255Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_1EnvironmentalOpen in IMG/M
3300007258Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_3EnvironmentalOpen in IMG/M
3300007265Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_1EnvironmentalOpen in IMG/M
3300009038Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H2.8 metaGEnvironmentalOpen in IMG/M
3300009088Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H3.8 metaGEnvironmentalOpen in IMG/M
3300009089Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H1.8 metaGEnvironmentalOpen in IMG/M
3300009090Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con1.8 metaGEnvironmentalOpen in IMG/M
3300009143Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_2EnvironmentalOpen in IMG/M
3300011269Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h3.4A metaGEnvironmentalOpen in IMG/M
3300011270Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h2.4B metaGEnvironmentalOpen in IMG/M
3300011271Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h3.4B metaGEnvironmentalOpen in IMG/M
3300012095Attine ant fungus gardens microbial communities from Florida, USA - TSFL039 MetaGHost-AssociatedOpen in IMG/M
3300012096Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h1.4B metaGEnvironmentalOpen in IMG/M
3300012189Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h1.4A metaGEnvironmentalOpen in IMG/M
3300012202Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_115_16 metaGEnvironmentalOpen in IMG/M
3300012203Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz3.16 metaGEnvironmentalOpen in IMG/M
3300012205Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_100_16 metaGEnvironmentalOpen in IMG/M
3300012361Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_60_16 metaGEnvironmentalOpen in IMG/M
3300012362Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_80_16 metaGEnvironmentalOpen in IMG/M
3300012582Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_20_16 metaGEnvironmentalOpen in IMG/M
3300012683Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz2.16 metaGEnvironmentalOpen in IMG/M
3300012917Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czobulk2.16 metaGEnvironmentalOpen in IMG/M
3300012918Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czcobulk3.16 metaGEnvironmentalOpen in IMG/M
3300012923Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_40_16 metaGEnvironmentalOpen in IMG/M
3300012925Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_2_16fungal (Illumina Assembly)EnvironmentalOpen in IMG/M
3300012927Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (Illumina Assembly)EnvironmentalOpen in IMG/M
3300012929Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_16fungal (Illumina Assembly)EnvironmentalOpen in IMG/M
3300015264Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_16fungal (Hybrid Assembly)EnvironmentalOpen in IMG/M
3300020582Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-OEnvironmentalOpen in IMG/M
3300021088Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-28-MEnvironmentalOpen in IMG/M
3300021170Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-26-MEnvironmentalOpen in IMG/M
3300024330Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (PacBio error correction)EnvironmentalOpen in IMG/M
3300026304Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_80cm (SPAdes)EnvironmentalOpen in IMG/M
3300026319Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_60cm (SPAdes)EnvironmentalOpen in IMG/M
3300026320Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_40cm (SPAdes)EnvironmentalOpen in IMG/M
3300026514Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - DL-13-BEnvironmentalOpen in IMG/M
3300026551Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_115cm (SPAdes)EnvironmentalOpen in IMG/M
3300026557Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_08_16fungalEnvironmentalOpen in IMG/M
3300027591Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM2_M1 (SPAdes)EnvironmentalOpen in IMG/M
3300027603Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM3H0_M3 (SPAdes)EnvironmentalOpen in IMG/M
3300027651Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM3H0_M2 (SPAdes)EnvironmentalOpen in IMG/M
3300027667Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM3_M2 (SPAdes)EnvironmentalOpen in IMG/M
3300027671Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_1 (SPAdes)EnvironmentalOpen in IMG/M
3300027738Forest soil microbial communities from El Dorado National Forest, California, USA - Mediterranean Blodgett CA OM3_M1 (SPAdes)EnvironmentalOpen in IMG/M
3300027846Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H2.8 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300027862Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H3.8 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300027875Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H1.8 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300027903Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_2 (SPAdes)EnvironmentalOpen in IMG/M
3300028047Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_M1 (SPAdes)EnvironmentalOpen in IMG/M
3300028536Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (Hybrid Assembly)EnvironmentalOpen in IMG/M
3300031820Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_515EnvironmentalOpen in IMG/M
3300032174Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_05EnvironmentalOpen in IMG/M
3300032180Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515EnvironmentalOpen in IMG/M

Geographical Distribution
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Family Sequences

Protein ID Sample Taxon ID Habitat Sequence
JGI12635J15846_1004384753300001593Forest SoilMSTGFLDRLATQLRVNKSSACRRAIQRILAVVKENFEAGKYKSPVEAESDFRQLVDREDACK*
JGI25614J43888_1006022023300002906Grasslands SoilVSTDFLDRLASQLRANKSAACRRAIQRILAVVQKNFEDGKYKNHVEAEADFRQLVDRDESCTG*
JGI25614J43888_1006452933300002906Grasslands SoilVSTDFLDRLASQLRANKSAACRRAIQRILAVVKKTFEDGKYKNHVEAEADFRQLVDRDESCTG*
JGI25614J43888_1009565023300002906Grasslands SoilVSTDFLDHLASQLRANKSAACRRAIQRILAIVKNNLEDGKYKNDVEAEADFRQLVDRDESCTR*
JGI25613J43889_1002147723300002907Grasslands SoilLDRLASQLRANKSAACRRAIQRILAVVKKTFEDGKYKNHVEAEADFGQLVDRDESCTG*
JGI25613J43889_1012220223300002907Grasslands SoilLCVSTDFLDRLASQLRANKSAACRRAIQRILAVAKKNFEEGKYKNDVEAEADFRHLVERDKGCK*
JGI25617J43924_1000255683300002914Grasslands SoilVSTDFLDRLASQLRANKSAACRRAIQRILAVVKKNFEDGKYRNHVEAEADFRQLVDRDEGCTR*
JGI25616J43925_1008754833300002917Grasslands SoilTRPSTALNVSLAFVPCPNSYNLCVSTDFLDRLASQLRSNKSAACRRAIQRILAVVKKNFEDCKYKNDVEAEADFRQLVDRDESCAG*
Ga0070706_10039491043300005467Corn, Switchgrass And Miscanthus RhizosphereMDTGFLDRLATQLKLNKSAARRSIQRTLAVVKKMFEDHRYKNHVEAESDFGQLVDRDDACK*
Ga0079222_1149821623300006755Agricultural SoilVSRDFLDRLATQLKAGKSAVCRRAIQRILAVVKKNFEDGKYENDVEAEADFRQLVDRDEGCK*
Ga0099791_1068452313300007255Vadose Zone SoilMWVESVSTDFLDRLATQLKTNKSALCRRAIQRILAVVKKNFEDGKYKNDVEAEADFRQLVDRDEGCTR*
Ga0099793_1015131813300007258Vadose Zone SoilVIPRRFSDSYTLCVSTDFLDRLTSQLRANKSAACRRAIQRILAVVKKNFEDGKYKNDVEAEADFRQMVGRNEGCK*
Ga0099794_1000267453300007265Vadose Zone SoilMYNRTFVDSAFIDRLATQLRANKSAACRRAIQRILAVVKKNFEDGKYKNDVEAEADFRQLVDRDEGCK*
Ga0099794_1036204923300007265Vadose Zone SoilVSTDFLDRLASQLRANKSAACRRAIQRILAVVKKNFEDGKYKNDVEAEADFRQLVGRDEGCK*
Ga0099794_1038316423300007265Vadose Zone SoilMSADFLDRLASQLRANKSAACRRVIQRILAVVKKNLEDGKYKNDVKAEADFRQLVDRDEGRK
Ga0099794_1043457313300007265Vadose Zone SoilLDRLASQLRANKSAACRRAIQRILAVVKKTFEDGKYKNHVEAEADFRQLVDRDESCTG*
Ga0099829_1102313823300009038Vadose Zone SoilVSTDFLERLASQLKVDKSAACRRAIQRILAVVKKKFEDGKYKNHVEAEADFRQLVDRDEGCK*
Ga0099829_1171200123300009038Vadose Zone SoilMWIESVSTDFLDRLATQLKTNKSALCRRAIQRILAVVKKNFEDGKYKNDVEAEADFRQLVDRDEGCK*
Ga0099830_1018483643300009088Vadose Zone SoilMWIESVSTDFLDRLATQLKTNKSALCRRASQRILAVVKKNFEDGKYKNDVEAEADFRQLVDRDEGCK*
Ga0099830_1171008923300009088Vadose Zone SoilVSTADFLERLGSQLRANKSAACRRAIQRILAVVKKNFEDGKYKNDVEAEADFRQLVDRDEGCK*
Ga0099828_1191628013300009089Vadose Zone SoilRANKSAACRRAIQRILAVVKKNFEDGKYKNDVEAEADFHQLVNRDEGCK*
Ga0099827_1090723613300009090Vadose Zone SoilSYNLCVSTDFLERLASQLKVNKSAAYLRAIQRILAVVKKNFEDGKYKNHVAAEAEFRQLVNRDEGCK*
Ga0099827_1091710513300009090Vadose Zone SoilLDRLASQLRADKSAACRRAIQRILAVVKKNFEDGKYKNHVEAEADFRQLVDRDEGCK*
Ga0099792_1115105613300009143Vadose Zone SoilHPPDSYNLCVSTDFLDRLAIASQLRANKSAACRRAIQRILAVVKKNFEDGKYKNHVEAEADFRQLVDRDESCTG*
Ga0137392_1054332523300011269Vadose Zone SoilVSRDFLDRLATQLKAGKSAVCRRAIQRILAVVKKNFEDGKYKNDVEAEADFRQLVD
Ga0137392_1098346413300011269Vadose Zone SoilATQLRANKSAACRRAIQRILAVVKKNFEDGKYKNDVEAEADFRQLVDRDEGCK*
Ga0137392_1126360223300011269Vadose Zone SoilVSTDFLDRLASQLRANKSAACRRAIQRILAVVKKNFEDGKYRNDVEAEADFRQLVDRDEGCK*
Ga0137392_1138460913300011269Vadose Zone SoilNLCVSTDFLDRLAGQLRANKSAACRRAIQRILAVVKNKFEDGKYKNDAEAEADFRHLVNHDEGCK*
Ga0137391_1016134923300011270Vadose Zone SoilMFFSSYNLCVSTDFLERLANQLRANKSAACRRAIQRILAVVKKNFEDGKYKNDVEAEADFHQLVNRDEGCK*
Ga0137391_1021986523300011270Vadose Zone SoilVSTDFLECLASQLKVDKSAACRRAIQRILAVVKKNFEDGKYKNHVEAEADFRQLVDRDEGCK*
Ga0137393_1018277813300011271Vadose Zone SoilMSADFLDRLASQLRANKSAACRRAIQRILAVVKKNLEDGKYKNDVEAEADFRQLVDRDEGCK*
Ga0137393_1061439723300011271Vadose Zone SoilVSTDFLERLASQLKVDKSTACRRAIQRILAVVKKKFEDGKYKNHVEAEADFRQLVERDEGCK*
Ga0137393_1120642623300011271Vadose Zone SoilLDRLASQLRADKSAACRRAIQRILAVVKKNFADGKYKNDVKAEADFRQLVDRDEGCE*
Ga0153955_10749713300012095Attine Ant Fungus GardensLKANKSAACRRAIQRILAVVKKNFEDDKYKSDVEAEADFRQLVDRYEGCK*
Ga0137389_1038866913300012096Vadose Zone SoilMWIESVSTDFLDRLATQLKTNKSALCRRAIQRILAVVKKNFEGGKYKNHVEAEADFRQLVDRDEGCK*
Ga0137389_1103638513300012096Vadose Zone SoilDRLATQLRANKSAACRRAIQRILAVVKKNFEDGKYKNDVEAEADFRQLVDRDEGCK*
Ga0137389_1154894813300012096Vadose Zone SoilQLRANKSAACRRAIQRILAVEKKKFADGKYKNHVEAEADFRQLVDRDEGCKWA*
Ga0137388_1074447813300012189Vadose Zone SoilLDRLASQLRADKSAACRRAIQRILAVVKKNFEDGKYKNDVEAEADFRQLVYRDEGCK*
Ga0137363_1010863623300012202Vadose Zone SoilVSTADFLERLASQLRANKSAACRRAIQRILAVVKKNFEDGKYKNDVEGEADFRQLVDRDEACK*
Ga0137363_1078387323300012202Vadose Zone SoilMWVVSVSTDFLDRLATQLKTNKSALCRRAIQRILAVVKKDFEGGKYKNHVEAEADFRQLVNRDGCTR*
Ga0137399_1123089013300012203Vadose Zone SoilVSTDFLDQLAKQLRVNKSAACRRAIQRTLAVIKKKAEDGKYNNHVEAESDFRQRVEREDACK*
Ga0137399_1162110023300012203Vadose Zone SoilLDRLASQLRANKSAACRRAIQRILAIVKNNLEDGKYKNDVEAEADFRQLVDRDESCAG*
Ga0137362_1009067543300012205Vadose Zone SoilMDSRFLDRLSTQLRANKSAACRRAIQRILAVVEKNFEDGKYKNHVEAEAEFRQLVDRDEGCK*
Ga0137362_1034703443300012205Vadose Zone SoilMNTAFLDRMATQLKLNKSAACRRSIQRTLAVIKKKAEDGKYKNHVEAESDFRQRVEWEESCK*
Ga0137362_1042403113300012205Vadose Zone SoilVSTDFLDRLANQLKVDKSAACRRAIQRILAVVKKNFEDGKYENDVEAEADFRRLVDRDEGCK*
Ga0137362_1077763323300012205Vadose Zone SoilLDRLASQLRANKSAACRRAIQRILAVVKKNLEDGKYKNDVEAEADFRQLVDRDEGCK*
Ga0137360_1010214753300012361Vadose Zone SoilASQLRANKSAACRRAIQRILAVVQKNFEDGKYKNHVEAEADFRQLVDRDESCTG*
Ga0137360_1046007623300012361Vadose Zone SoilMNTAFLDRMTTQLKLNKSAACRRSIQRTLAVIKKKAEDGKYKNDVEAESDFRQRVEREDACK*
Ga0137361_1004442383300012362Vadose Zone SoilMSADFLDRLASQLRANKSAACRRAIQRILAVVKKNLEDGKYKNDVEAEADFRQLVDRD
Ga0137358_1075534123300012582Vadose Zone SoilLDRLASQLRANKSAACRRAIQRILAVVKKTFEDGKYKNHVEAEADFRQLVDRDESCT
Ga0137398_1003562453300012683Vadose Zone SoilMNTAFLDRMTTQLKLNKSAACRRSIQRTLAVIKKKAEDGKYKNHVEAESDFRQRVESEEACK*
Ga0137398_1019554633300012683Vadose Zone SoilVSTDFLDQLAKQLRVNKSAACRRAIQRTLAVIKKKAEDGEYKNHVEAESDFRQRVEREDACK*
Ga0137395_1001245863300012917Vadose Zone SoilMNTAFLDRMTTQLKLNKSAACRRSIQRTLAVIKKKAEDGKYKNDVEAESDFRQRVESEEACK*
Ga0137396_1012780723300012918Vadose Zone SoilVSTDFLDRLASQLRVNKSAACRRAIQRSLAVVKKNFEDGKYKNDVEAEADFRQLVDRDEGCK*
Ga0137396_1028612913300012918Vadose Zone SoilMSADFLDRLASQLRANKSAACRRAIQRILAVAKKNFEEGKYKNDVEAEADFRHLVERDKGCK*
Ga0137396_1080668523300012918Vadose Zone SoilMWVESVSTDFLDRLATQLKTNKSAPCRRAIQRILAVVKKNFEDGKYKNDVDAEADFRHLMDRDEGCK*
Ga0137396_1102108413300012918Vadose Zone SoilSYNRCVNTDFLDQLARQLRVNKSAACRRAIQRTLAVIKKKAEDGEYKNHVEAESDFRQRVEREEACK*
Ga0137359_1013408723300012923Vadose Zone SoilLDRLATQLRANKSAACRRAIQRILAVVKKNFEDGKYKNDVEAEADLRQLVNRDEGCK*
Ga0137419_1053115513300012925Vadose Zone SoilVNTDFLDQLARQLRVNKSAACRRAIQRTLAVIKKKAEDGEYNNHVEAESDFRQRVEREDACN*
Ga0137416_1056812813300012927Vadose Zone SoilRLASQLRANKSAACRRAIQRILAVVQKNFEDGKYKNHVEAEADFRQLVDRDESCTG*
Ga0137416_1101944613300012927Vadose Zone SoilVDTDFLDQLARQLRVNKSAACRRAIQRTLAVIKKKAEDGEYKNHVEAESDFRQRVEREEACK*
Ga0137416_1122237713300012927Vadose Zone SoilVSTGFLDRLASELRANKSAACRRAIQRILAIVKNNFEGGKYENDVEAEADFRQLVDRDKGCK*
Ga0137404_1100414023300012929Vadose Zone SoilVSTDFLDRLASQLRTNKSAACRRAIQRILAVVKKNFEDGKYKNDVEAEANFRQLVDRDEGCK*
Ga0137404_1143405823300012929Vadose Zone SoilVSTDFLDRLAIQLRANKSAACRRAIQRILAIVKNNFNDGKYQNDVEAEADFRHLVDRDEGCK*
Ga0137403_1025097743300015264Vadose Zone SoilRCVSTDFLDQLAKQLRVNKSAACRRAIQRTLAVIKKKAEDGEYKNHVEAESDFRQRVEREDACK*
Ga0137403_1033600113300015264Vadose Zone SoilDSYNLCVSTDFLDRLASQLRANKSAACRRAIQRILAVVKKNFEDGKYKNDVEAEANFRQLVDRDEGCK*
Ga0137403_1118911413300015264Vadose Zone SoilLPDSYNLCASTDFLDRLASQLRTNKSAACRRAIQRILAVVKQNFEGGKYKNDIEAEADFRQLVGRDEGCK*
Ga0210395_1068384423300020582SoilTQLRANKNAACRRAIQRILAIVKKNCEEGKYKNDVEAEADFRHLVERDKGCK
Ga0210404_1000028243300021088SoilVSTDFLDRLASQLRANKSAACRRAIQRILAIVKNNCEDGKYKDDVEAEADFRHLVDRGEGCN
Ga0210404_10000579133300021088SoilMSTDFLDRLANQLRANKSAACRRAIQRILAIVKKNCEQGKYKNDVEAEADFRRFVDRDESCK
Ga0210404_1000083273300021088SoilLDRLANQHRANKSAACRRAIQRILAVAKKNFEDGKYKNDVEAEADFRQLVDRDEGCK
Ga0210404_1001134763300021088SoilSLRTVRFPGRYNRPVSTDFLDRLARQLRVNKSAACRRAIQRILAVVKENCEDGKYKNDVEAEADFRQLVGHDEGCK
Ga0210404_1001468933300021088SoilVSTDFLDRLASQLRANKSAACRRAIQRILVIVKKNFEEGKYNNDVEAEADFRQLVGRNEGCK
Ga0210404_1010754613300021088SoilRANKSAACRRAIQRILAVVKKNFEDGKYKNDVEAEADFRQLVDRDEGCK
Ga0210400_1000294323300021170SoilVSTDFLDRLATQLRANKSAACRRAIQRILAVVKKNCEGGKYKNDVEAEADFRQLVDRDEGCK
Ga0210400_1012070513300021170SoilLDRLASQLKANKSAACRRAIQRILAVVKKNFGDGKYKNDVEAEADFRQLVDRDEGCK
Ga0137417_113331123300024330Vadose Zone SoilMSADFLDRLASQLRANKSAACRRAIQRILAVVKKNLEDGKYKNDVEAEADFRQLVDRDEGCK
Ga0137417_128783713300024330Vadose Zone SoilVSTDFLDHLASQLRANKSAACRRAIQRILAIVKNNLEDGKYKNDVEAEADFRQLVDRDESCTR
Ga0209240_1008877103300026304Grasslands SoilLRANKSAACRRAIQRILAVVKNNLEDGKYKNDVEAEADFRQLVDRDESCTR
Ga0209240_112180913300026304Grasslands SoilVSTDFLDRLASQLRANKSAACRRAIQRILAVVQKNFEDGKYKNHVEAEADFRQLVDRDESCTG
Ga0209240_113011523300026304Grasslands SoilMYNRTFVDSAFIDRLATQLRANKSAACRRAIQRILAVVKKNFEDGKYKNDVEAEADFRQLVDRDEGCK
Ga0209240_122277433300026304Grasslands SoilISSSQLRVNKSAACRRAIQRILAVVKKKFEDGKYKHHVEAEADFRQLVDRDESCTG
Ga0209647_100577643300026319Grasslands SoilLDRLASQLRANKSAACRRAIQRILAVVKKTFEDGKYKNHVEAEADFRQLVDRDESCTG
Ga0209131_1001263153300026320Grasslands SoilLDRLASQLRANKSAACRRAIQRILAVVKKTFEDGKYKNHVEAEADFGQLVDRDESCTG
Ga0209131_121370813300026320Grasslands SoilLDRLAIQLRANKSAACRRAIQRVLAVVKRNFEDGKYKNDVEAEADFRQLVDRD
Ga0257168_103940733300026514SoilASQLRANKSAACRRAIQRILAVVKNNLEDGKYKNDVEAEADFRQLVDRDESCTR
Ga0209648_1009536053300026551Grasslands SoilVSTDFLDRLASQLRANKSAACRRAIQRILAVVKKNFEDGKYRNHVEAEADFRQLVDRDEGCTR
Ga0179587_1005196733300026557Vadose Zone SoilMSADFLDRLASQLRANKSAACRRAIQRILAVAKKNFEEGKYKNDVEAEADFRHLVERDKGCK
Ga0179587_1048014823300026557Vadose Zone SoilVSNDFLDRLASQLRANKSAACRRAIQRILAVVKKKFEDGKYKNHVEAEGDFRQLVDRDESCTR
Ga0179587_1064001823300026557Vadose Zone SoilMNAVFLDRLATQLRVNKSSACRRAIQRILAVVKKNWEDGKYKSHVEAEGDFRRLLDPEDACK
Ga0209733_102480613300027591Forest SoilMSTGFLDRLATQLRVNKSSACRRAIQRILAVVKENFEAGKYKSPVEAESDFRQLVDREDACK
Ga0209331_102719133300027603Forest SoilVSADFLDRLASQLRANKSAACRRAIQRILAVVKKNLEDGKYKNDVEAEADFRHLVDRGEGCK
Ga0209217_104339733300027651Forest SoilVSADFLDRLASQLRANKSAACRRAIQRILAVVKKNLEDGKYKNDVEAEANFRNLVDRDEGCK
Ga0209009_106755623300027667Forest SoilMSTGFLDRLATQLRVNKSSACRRALQRILAVVKENFEAGKYKSPVEAESDFRQLVDREDACK
Ga0209588_101407853300027671Vadose Zone SoilPPDSYNLCVSTDFLDRLASQLRANKSAACRRAIQRILAVVKKNCEDGKYKNHVEAEADFRQLVDRDEGCTR
Ga0209588_113643133300027671Vadose Zone SoilDFLDRLASQLRANKSAACRRAIQRILAVVKKTFEDGKYKNHVEAEADFRQLVDRDESCTG
Ga0208989_1012342613300027738Forest SoilLDRLASQLRANKSAACRRAIQRILAVVKKNFEDGKYKNDVEAEADFRQLVDRDEGCK
Ga0209180_1050912823300027846Vadose Zone SoilVSTDFLDRLATQLKTNKSALCRRAIQRILAVVKKNFEDGKYKNDVEAEADFRQLVDRDEGCK
Ga0209701_1047616713300027862Vadose Zone SoilVSTADFLERLGSQLRANKSAACRRAIQRILAVVKKNFEDGKYKNDVEAEADFRQLVDRDEGCK
Ga0209283_1074874113300027875Vadose Zone SoilWIESVSTDFLDRLATQLKTNKSALCRRAIQRILAVVKKNFEDGKYKNDVEAEADFRQLVDRDEGCK
Ga0209488_1026530713300027903Vadose Zone SoilVSTDFLDRLASQLRANKSAACRRAIQRILAVAKKNFEEGKYKNDVEAEADFRHLVERDKGCK
Ga0209488_1028168223300027903Vadose Zone SoilMNTAFLDRMTTQLKLNKSAAYRRSIQRTLAVIKKKAEDGKYKNDVEAESDFRQRVEREDACK
Ga0209526_1078083013300028047Forest SoilVSTDFLDRLASQMRAHKSAACRRAIQRILAIVKSNFEDGKYNNDVEAEADFRHLVDREE
Ga0137415_1035364623300028536Vadose Zone SoilVSTDFLDQLAKQLRVNKSAACRRAIQRTLAVIKKKAEDGEYKNHVEAESDFRQRVEREEACK
Ga0307473_1019382523300031820Hardwood Forest SoilVSRDFLDRLATQLKVGKSAPCRRAIQRILAVVKKNFEDGKYKNDVEAEADFRQLVDRDEGCK
Ga0307470_1090279313300032174Hardwood Forest SoilVSTDFLDRLASQLRVNKSAACRRAIQRILAIVKNNCEDGKYKDDVEAEADFRHLVDRDEGCK
Ga0307471_10157191523300032180Hardwood Forest SoilVSRDFLDRLATQLKAGKSAVCRRAIQRILAVVKKNFEDGKYENDVEAEADFRQLVDRDEGCK


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