Sample 3300012079

Overview

Basic Information
IMG/M Taxon OID	3300012079 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0121619 \| Gp0175729 \| Ga0153918
Sample Name	Attine ant fungus gardens microbial communities from Florida, USA - TSFL002 MetaG
Sequencing Status	Permanent Draft
Sequencing Center	DOE Joint Genome Institute (JGI)
Published?	N
Use Policy	Open

Dataset Contents
Total Genome Size	202715973
Sequencing Scaffolds	15
Novel Protein Genes	20
Associated Families	17

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Basidiomycota → Agaricomycotina → Agaricomycetes	1
All Organisms → cellular organisms → Eukaryota	1
Not Available	5
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Basidiomycota → Agaricomycotina → Agaricomycetes → Agaricomycetidae → Agaricales	2
All Organisms → cellular organisms → Bacteria → Terrabacteria group	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. ARR65	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1
All Organisms → cellular organisms → Bacteria	1
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Basidiomycota → Agaricomycotina → Agaricomycetes → Agaricomycetes incertae sedis → Polyporales → Grifolaceae → Grifola → Grifola frondosa	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
Name	Attine Ant Fungus Gardens Microbial Communities From Various Locations In Usa
Type	Host-Associated
Taxonomy	Host-Associated → Fungi → Mycelium → Unclassified → Unclassified → Attine Ant Fungus Gardens → Attine Ant Fungus Gardens Microbial Communities From Various Locations In Usa

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	Unclassified
Earth Microbiome Project Ontology (EMPO)	Host-associated → Fungus → Fungus corpus

Location Information
Location	USA: Florida, Paynes Creek Historic State Park
Coordinates	Lat. (^o)	27.6213	Long. (^o)	-81.8137	Alt. (m)	N/A	Depth (m)	N/A
Location on Map

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Family	Category	Number of Sequences	3D Structure?
F000950	Metagenome	822	Y
F002822	Metagenome	527	Y
F005099	Metagenome / Metatranscriptome	412	Y
F008928	Metagenome	325	Y
F018233	Metagenome / Metatranscriptome	236	Y
F027793	Metagenome / Metatranscriptome	193	Y
F031829	Metagenome	181	Y
F032889	Metagenome	178	Y
F033186	Metagenome	178	Y
F048691	Metagenome	147	Y
F050816	Metagenome	144	Y
F054481	Metagenome	139	Y
F058495	Metagenome / Metatranscriptome	135	Y
F065291	Metagenome	127	Y
F083491	Metagenome	112	Y
F096889	Metagenome / Metatranscriptome	104	Y
F101981	Metagenome / Metatranscriptome	102	Y

Family

Category

Number of Sequences

3D Structure?

F000950

Metagenome

822

F002822

Metagenome

527

F005099

Metagenome / Metatranscriptome

412

F008928

Metagenome

325

F018233

Metagenome / Metatranscriptome

236

F027793

Metagenome / Metatranscriptome

193

F031829

Metagenome

181

F032889

Metagenome

178

F033186

Metagenome

178

F048691

Metagenome

147

F050816

Metagenome

144

F054481

Metagenome

139

F058495

Metagenome / Metatranscriptome

135

F065291

Metagenome

127

F083491

Metagenome

112

F096889

Metagenome / Metatranscriptome

104

F101981

Metagenome / Metatranscriptome

102

Scaffold	Taxonomy	Length	IMG/M Link
Ga0153918_1006118	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Basidiomycota → Agaricomycotina → Agaricomycetes	3788	Open in IMG/M
Ga0153918_1008177	All Organisms → cellular organisms → Eukaryota	3033	Open in IMG/M
Ga0153918_1008568	Not Available	2928	Open in IMG/M
Ga0153918_1015743	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Basidiomycota → Agaricomycotina → Agaricomycetes → Agaricomycetidae → Agaricales	1820	Open in IMG/M
Ga0153918_1017502	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Basidiomycota → Agaricomycotina → Agaricomycetes → Agaricomycetidae → Agaricales	1673	Open in IMG/M
Ga0153918_1034940	Not Available	966	Open in IMG/M
Ga0153918_1042110	All Organisms → cellular organisms → Bacteria → Terrabacteria group	843	Open in IMG/M
Ga0153918_1054367	Not Available	707	Open in IMG/M
Ga0153918_1055709	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. ARR65	696	Open in IMG/M
Ga0153918_1057929	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	679	Open in IMG/M
Ga0153918_1064506	Not Available	634	Open in IMG/M
Ga0153918_1069262	All Organisms → cellular organisms → Bacteria	606	Open in IMG/M
Ga0153918_1078715	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Basidiomycota → Agaricomycotina → Agaricomycetes → Agaricomycetes incertae sedis → Polyporales → Grifolaceae → Grifola → Grifola frondosa	561	Open in IMG/M
Ga0153918_1081239	Not Available	551	Open in IMG/M
Ga0153918_1091459	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	514	Open in IMG/M

Scaffold

Taxonomy

Length

IMG/M Link

Ga0153918_1006118

All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Basidiomycota → Agaricomycotina → Agaricomycetes

3788

Open in IMG/M

Ga0153918_1008177

All Organisms → cellular organisms → Eukaryota

3033

Open in IMG/M

Ga0153918_1008568

Not Available

2928

Open in IMG/M

Ga0153918_1015743

All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Basidiomycota → Agaricomycotina → Agaricomycetes → Agaricomycetidae → Agaricales

1820

Open in IMG/M

Ga0153918_1017502

All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Basidiomycota → Agaricomycotina → Agaricomycetes → Agaricomycetidae → Agaricales

1673

Open in IMG/M

Ga0153918_1034940

Not Available

966

Open in IMG/M

Ga0153918_1042110

All Organisms → cellular organisms → Bacteria → Terrabacteria group

843

Open in IMG/M

Ga0153918_1054367

Not Available

707

Open in IMG/M

Ga0153918_1055709

All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. ARR65

696

Open in IMG/M

Ga0153918_1057929

All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium

679

Open in IMG/M

Ga0153918_1064506

Not Available

634

Open in IMG/M

Ga0153918_1069262

All Organisms → cellular organisms → Bacteria

606

Open in IMG/M

Ga0153918_1078715

All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Basidiomycota → Agaricomycotina → Agaricomycetes → Agaricomycetes incertae sedis → Polyporales → Grifolaceae → Grifola → Grifola frondosa

561

Open in IMG/M

Ga0153918_1081239

Not Available

551

Open in IMG/M

Ga0153918_1091459

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria

514

Open in IMG/M

Scaffold ID	Protein ID	Family	Sequence
Ga0153918_1006118	Ga0153918_10061185	F008928	LSQKPSLPGSSKNKNQSFRAWLMKLLEEDNDDPESPPEVVNVNSTSIEKIPDPLPPSGKGKGTPKLDFPLGL*
Ga0153918_1006550	Ga0153918_10065507	F048691	MEDQYGLTPEDYVYDMKLLLNARYGQGMLFLILLFLKQRLRHFQAIAATLMVYDFIYHIPQQVRLSICKQ*
Ga0153918_1006834	Ga0153918_10068344	F048691	MEDQYGLIPDDYIFDLKNLSNERYIQGILFLILLFLKQRLKPFQVIVGTLMVYDFLYHIPQQVRLSICK*
Ga0153918_1008177	Ga0153918_10081775	F065291	VSRLILNLLEANCPLDESIDSMTIESLMFHHSESNRDTEADISRGDRGTISLGEKIHEEAR*
Ga0153918_1008180	Ga0153918_10081806	F054481	LLLLRHIAVELHPRGVSRPLVGHDGIYLIGVRGLKAKRIFISHNPAIAPTTEVLGPLKSACGLDSSHRQFGTLVSFSYDNNHEVGMATYDLTSHLSHYRWLRLNILNISNNRAIVKDLAGLDDNVGRVVLMRSGSNNRFLIMDVI*
Ga0153918_1008568	Ga0153918_10085684	F065291	LILNLLEANCPLDESIDSMTIETLMFRHTESDRDTVADISQGDRGAISLGEEIHEEAR*
Ga0153918_1010043	Ga0153918_10100432	F048691	MADQYGLTAEDYANDLRRLSNTRYTQGIPFFIILFLKQRLKPFQVIVATLMAYDFIYHIPQQVRLFICKQ*
Ga0153918_1015743	Ga0153918_10157434	F032889	MLVSGFPSLDKIGDEDPDNNILSWADTTDSGNYQQVIVVAAILNNRDQYGDSDCEDTKTWKAHVPEWL
Ga0153918_1017502	Ga0153918_10175021	F000950	LFRAWLIKLLEEDNDDLESPPEVINVNSASIEEIPDPIPPSGKENGTPKLDFPLGL
Ga0153918_1034940	Ga0153918_10349401	F002822	MEKTNTLSNEKDILKEMTYGNLKKTYKMQAKSCRSIFRVYQKQDNFSMELELRREVMSQTSFSHISTNNCTIPTV*
Ga0153918_1042110	Ga0153918_10421101	F096889	VVGAPDWKGITPAAEEVADPPPPVGCTMTCVAVMVVPLTVPSTRTGSPVVMALAEVELVPFWYVVVDASLTVTF*
Ga0153918_1054367	Ga0153918_10543671	F005099	LIAGILLLAVPASPALAYWQFIERPAGVEVKPSPRYGTQKECEAALKKTEAALKKAYPDRYPLVGSCEEVR*
Ga0153918_1055709	Ga0153918_10557092	F101981	MTFVRRVDNYDGSGCAFAVKPRASGAPQAALGLDRSAHPGKGAAMPQMQSGDVTK*
Ga0153918_1057929	Ga0153918_10579291	F058495	MSSYVMYCRAQAAECARRAKLASSPELATERRNLGLRWLRLAEKAKATPLHRVREPAPKA
Ga0153918_1064506	Ga0153918_10645062	F033186	MNKINNKIPWGLAMGTLGVTIAGAFNGTAIIGLASITGGAIALVIALLARQQMEKTKLNPELAMKLK*
Ga0153918_1069262	Ga0153918_10692621	F018233	MVGILVVTQAALLIARRASTWTIDVHLGGLSPACVAVDQRSPAQVTAELRVTGLFRSRDGGRNWEPT
Ga0153918_1077763	Ga0153918_10777632	F050816	MPVTLKALSARNVAAHTEWKATDLWLGVARPIPSPTLLER
Ga0153918_1078715	Ga0153918_10787151	F083491	KSPKTISLFSSQVPENLKNPCKTRTMRMDYFCTEGRFISLKAWMTLCNNRSFRCTTICHPPDTQVGERPMSWSPEITGGLG*
Ga0153918_1081239	Ga0153918_10812391	F031829	VATPTTRRQPASSTPPSGQQAQAQAQRQAYNRRKTRAKAKSEALRHKEAAQVQALPVLRPHAAGIDIGS
Ga0153918_1091459	Ga0153918_10914591	F027793	DVLGLQSVAATAQLSRHNHRGGGGDSSSVRKNVCLITLNGSLNGLGILNILNGFGGL*

Scaffold ID

Protein ID

Family

Sequence

Ga0153918_1006118

Ga0153918_10061185

F008928

LSQKPSLPGSSKNKNQSFRAWLMKLLEEDNDDPESPPEVVNVNSTSIEKIPDPLPPSGKGKGTPKLDFPLGL*

Ga0153918_1006550

Ga0153918_10065507

F048691

MEDQYGLTPEDYVYDMKLLLNARYGQGMLFLILLFLKQRLRHFQAIAATLMVYDFIYHIPQQVRLSICKQ*

Ga0153918_1006834

Ga0153918_10068344

F048691

MEDQYGLIPDDYIFDLKNLSNERYIQGILFLILLFLKQRLKPFQVIVGTLMVYDFLYHIPQQVRLSICK*

Ga0153918_1008177

Ga0153918_10081775

F065291

VSRLILNLLEANCPLDESIDSMTIESLMFHHSESNRDTEADISRGDRGTISLGEKIHEEAR*

Ga0153918_1008180

Ga0153918_10081806

F054481

LLLLRHIAVELHPRGVSRPLVGHDGIYLIGVRGLKAKRIFISHNPAIAPTTEVLGPLKSACGLDSSHRQFGTLVSFSYDNNHEVGMATYDLTSHLSHYRWLRLNILNISNNRAIVKDLAGLDDNVGRVVLMRSGSNNRFLIMDVI*

Ga0153918_1008568

Ga0153918_10085684

F065291

LILNLLEANCPLDESIDSMTIETLMFRHTESDRDTVADISQGDRGAISLGEEIHEEAR*

Ga0153918_1010043

Ga0153918_10100432

F048691

MADQYGLTAEDYANDLRRLSNTRYTQGIPFFIILFLKQRLKPFQVIVATLMAYDFIYHIPQQVRLFICKQ*

Ga0153918_1015743

Ga0153918_10157434

F032889

MLVSGFPSLDKIGDEDPDNNILSWADTTDSGNYQQVIVVAAILNNRDQYGDSDCEDTKTWKAHVPEWL

Ga0153918_1017502

Ga0153918_10175021

F000950

LFRAWLIKLLEEDNDDLESPPEVINVNSASIEEIPDPIPPSGKENGTPKLDFPLGL

Ga0153918_1034940

Ga0153918_10349401

F002822

MEKTNTLSNEKDILKEMTYGNLKKTYKMQAKSCRSIFRVYQKQDNFSMELELRREVMSQTSFSHISTNNCTIPTV*

Ga0153918_1042110

Ga0153918_10421101

F096889

VVGAPDWKGITPAAEEVADPPPPVGCTMTCVAVMVVPLTVPSTRTGSPVVMALAEVELVPFWYVVVDASLTVTF*

Ga0153918_1054367

Ga0153918_10543671

F005099

LIAGILLLAVPASPALAYWQFIERPAGVEVKPSPRYGTQKECEAALKKTEAALKKAYPDRYPLVGSCEEVR*

Ga0153918_1055709

Ga0153918_10557092

F101981

MTFVRRVDNYDGSGCAFAVKPRASGAPQAALGLDRSAHPGKGAAMPQMQSGDVTK*

Ga0153918_1057929

Ga0153918_10579291

F058495

MSSYVMYCRAQAAECARRAKLASSPELATERRNLGLRWLRLAEKAKATPLHRVREPAPKA

Ga0153918_1064506

Ga0153918_10645062

F033186

MNKINNKIPWGLAMGTLGVTIAGAFNGTAIIGLASITGGAIALVIALLARQQMEKTKLNPELAMKLK*

Ga0153918_1069262

Ga0153918_10692621

F018233

MVGILVVTQAALLIARRASTWTIDVHLGGLSPACVAVDQRSPAQVTAELRVTGLFRSRDGGRNWEPT

Ga0153918_1077763

Ga0153918_10777632

F050816

MPVTLKALSARNVAAHTEWKATDLWLGVARPIPSPTLLER

Ga0153918_1078715

Ga0153918_10787151

F083491

KSPKTISLFSSQVPENLKNPCKTRTMRMDYFCTEGRFISLKAWMTLCNNRSFRCTTICHPPDTQVGERPMSWSPEITGGLG*

Ga0153918_1081239

Ga0153918_10812391

F031829

VATPTTRRQPASSTPPSGQQAQAQAQRQAYNRRKTRAKAKSEALRHKEAAQVQALPVLRPHAAGIDIGS

Ga0153918_1091459

Ga0153918_10914591

F027793

DVLGLQSVAATAQLSRHNHRGGGGDSSSVRKNVCLITLNGSLNGLGILNILNGFGGL*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

3300012079: Attine ant fungus gardens microbial communities from Florida, USA - TSFL002 MetaG

Overview

Ecosystem and Geography

Associated Families

Associated Scaffolds

Sequences