Sample 3300011313

Basic Information
IMG/M Taxon OID	3300011313 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0114292 \| Gp0125905 \| Ga0138392
Sample Name	Marine microbial communities from the Southern Atlantic ocean - KN S17 Bottom_A metaT (Metagenome Metatranscriptome) (version 2)
Sequencing Status	Permanent Draft
Sequencing Center	DOE Joint Genome Institute (JGI)
Published?	N
Use Policy	Open

Basic Information

IMG/M Taxon OID

GOLD Reference
(Study | Sequencing Project | Analysis Project)

Sample Name

Marine microbial communities from the Southern Atlantic ocean - KN S17 Bottom_A metaT (Metagenome Metatranscriptome) (version 2)

Sequencing Status

Permanent Draft

Sequencing Center

DOE Joint Genome Institute (JGI)

Published?

Use Policy

Open

Dataset Contents
Total Genome Size	82362164
Sequencing Scaffolds	28
Novel Protein Genes	32
Associated Families	23

Dataset Contents

Total Genome Size

82362164

Sequencing Scaffolds

Novel Protein Genes

Associated Families

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	15
All Organisms → cellular organisms → Bacteria	3
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Oceanospirillales → Oceanospirillaceae → unclassified Oceanospirillaceae → Oceanospirillaceae bacterium	1
All Organisms → Viruses → Predicted Viral	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → unclassified Pelagibacterales → Pelagibacterales bacterium	3
All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → unclassified Verrucomicrobiales → Verrucomicrobiales bacterium	1
All Organisms → cellular organisms → Bacteria → Proteobacteria	1
All Organisms → cellular organisms → Bacteria → FCB group → Candidatus Marinimicrobia	1
All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	1

Dataset Phylogeny

Taxonomy Groups

Number of Scaffolds

Not Available

All Organisms → cellular organisms → Bacteria

All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Oceanospirillales → Oceanospirillaceae → unclassified Oceanospirillaceae → Oceanospirillaceae bacterium

All Organisms → Viruses → Predicted Viral

All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → unclassified Pelagibacterales → Pelagibacterales bacterium

All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → unclassified Verrucomicrobiales → Verrucomicrobiales bacterium

All Organisms → cellular organisms → Bacteria → Proteobacteria

All Organisms → cellular organisms → Bacteria → FCB group → Candidatus Marinimicrobia

All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota

All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria

Ecosystem Assignment (GOLD)
Name	Marine Microbial Communities From The Southern Atlantic Ocean Transect To Study Dissolved Organic Matter And Carbon Cycling
Type	Environmental
Taxonomy	Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From The Southern Atlantic Ocean Transect To Study Dissolved Organic Matter And Carbon Cycling

Ecosystem Assignment (GOLD)

Name

Marine Microbial Communities From The Southern Atlantic Ocean Transect To Study Dissolved Organic Matter And Carbon Cycling

Type

Environmental

Taxonomy

Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From The Southern Atlantic Ocean Transect To Study Dissolved Organic Matter And Carbon Cycling

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	marine biome → marine water body → sea water
Earth Microbiome Project Ontology (EMPO)	Free-living → Saline → Water (saline)

Alternative Ecosystem Assignments

Environment Ontology (ENVO)

marine biome → marine water body → sea water

Earth Microbiome Project Ontology (EMPO)

Free-living → Saline → Water (saline)

Location Information
Location	Southern Atlantic Ocean
Coordinates	Lat. (^o)	-28.2362	Long. (^o)	-38.4949	Alt. (m)	N/A	Depth (m)	N/A
Location on Map

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Location Information

Location

Southern Atlantic Ocean

Coordinates

Lat. (^o)

-28.2362

Long. (^o)

-38.4949

Alt. (m)

N/A

Depth (m)

N/A

Location on Map

Zoom:

Family	Category	Number of Sequences	3D Structure?
F002753	Metagenome / Metatranscriptome	532	Y
F006551	Metagenome / Metatranscriptome	370	Y
F013190	Metagenome / Metatranscriptome	273	Y
F021318	Metagenome / Metatranscriptome	219	Y
F025846	Metagenome / Metatranscriptome	200	Y
F036429	Metagenome / Metatranscriptome	170	N
F040684	Metagenome / Metatranscriptome	161	N
F042932	Metagenome / Metatranscriptome	157	N
F050311	Metagenome / Metatranscriptome	145	Y
F052659	Metagenome / Metatranscriptome	142	N
F055787	Metagenome / Metatranscriptome	138	Y
F060053	Metagenome / Metatranscriptome	133	N
F062154	Metagenome / Metatranscriptome	131	N
F062832	Metagenome / Metatranscriptome	130	N
F063612	Metatranscriptome	129	Y
F065861	Metagenome / Metatranscriptome	127	Y
F067833	Metagenome / Metatranscriptome	125	Y
F071320	Metagenome / Metatranscriptome	122	N
F074005	Metagenome / Metatranscriptome	120	N
F078927	Metagenome / Metatranscriptome	116	Y
F088935	Metagenome / Metatranscriptome	109	N
F093997	Metagenome / Metatranscriptome	106	N
F094427	Metagenome / Metatranscriptome	106	Y

Family

Scaffold	Taxonomy	Length	IMG/M Link
Ga0138392_1016722	Not Available	888	Open in IMG/M
Ga0138392_1023233	All Organisms → cellular organisms → Bacteria	1210	Open in IMG/M
Ga0138392_1030892	Not Available	504	Open in IMG/M
Ga0138392_1037175	Not Available	655	Open in IMG/M
Ga0138392_1038094	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Oceanospirillales → Oceanospirillaceae → unclassified Oceanospirillaceae → Oceanospirillaceae bacterium	562	Open in IMG/M
Ga0138392_1048989	Not Available	828	Open in IMG/M
Ga0138392_1051971	Not Available	556	Open in IMG/M
Ga0138392_1053019	All Organisms → Viruses → Predicted Viral	1734	Open in IMG/M
Ga0138392_1053037	Not Available	502	Open in IMG/M
Ga0138392_1055433	Not Available	655	Open in IMG/M
Ga0138392_1075102	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → unclassified Pelagibacterales → Pelagibacterales bacterium	557	Open in IMG/M
Ga0138392_1087373	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → unclassified Verrucomicrobiales → Verrucomicrobiales bacterium	770	Open in IMG/M
Ga0138392_1097406	All Organisms → cellular organisms → Bacteria → Proteobacteria	684	Open in IMG/M
Ga0138392_1104531	All Organisms → cellular organisms → Bacteria → FCB group → Candidatus Marinimicrobia	629	Open in IMG/M
Ga0138392_1109565	All Organisms → cellular organisms → Bacteria	508	Open in IMG/M
Ga0138392_1123051	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → unclassified Pelagibacterales → Pelagibacterales bacterium	623	Open in IMG/M
Ga0138392_1128513	Not Available	504	Open in IMG/M
Ga0138392_1128932	Not Available	634	Open in IMG/M
Ga0138392_1130200	Not Available	660	Open in IMG/M
Ga0138392_1130442	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota	836	Open in IMG/M
Ga0138392_1134258	Not Available	852	Open in IMG/M
Ga0138392_1137793	Not Available	669	Open in IMG/M
Ga0138392_1139128	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	1765	Open in IMG/M
Ga0138392_1146061	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → unclassified Pelagibacterales → Pelagibacterales bacterium	594	Open in IMG/M
Ga0138392_1146885	Not Available	966	Open in IMG/M
Ga0138392_1149521	Not Available	979	Open in IMG/M
Ga0138392_1149803	Not Available	1050	Open in IMG/M
Ga0138392_1150876	All Organisms → cellular organisms → Bacteria	825	Open in IMG/M

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0138392_1016722	Ga0138392_10167221	F063612	PKSVAGGSPADEAASVAEESGLKIPRRGTGSKEDVYSPAL*
Ga0138392_1023233	Ga0138392_10232332	F065861	MGIIIVIRRKISLIYRENSIIFDLSFRVVLFKIRGEIIGRNNNSAAIPTLEEGLLHKNKLVLDCLT*
Ga0138392_1030892	Ga0138392_10308922	F025846	MAGIAPVVTAHLMVVTPAVLMVNLTVVPMVVHMVSASMAHGHVMVQQTAMTDQMKPIVAILHHVKTKVSGIVAMANVFQHHMYVMAQVNSVTQ
Ga0138392_1037175	Ga0138392_10371751	F074005	MVQIRTIDELEALYYGYNRNLLRKADAPATTSTAGVFNAIYGAYAWAQLNLEANAFGILPKYPWDKSGWR
Ga0138392_1037175	Ga0138392_10371752	F062832	GIDSRIKALETPTDLPAAPAGTTGSDNDVGADITVPAQPYPQGDQAGLDDDRQNDNAPAGDSAPSMQEKPLHKNETPRLVSKSQHTFTTETPRPGAAIEKAGQSQTDFSPILKDARAEGYEGLSQVARNILKGKYYTPTDEEVRGF*
Ga0138392_1038094	Ga0138392_10380941	F094427	HLTAPNNKEQLMQLHLLQHPNIAHQTRSAEYLQVELLMLYGESCDIGQGKHYTSLTKRGYKRLLKDMQHVQQHLKSLQSTYLIDADGGTVVTVGQKYKGKLNKRSAYRASH*
Ga0138392_1048989	Ga0138392_10489891	F063612	GSPADDATLVAEESGLKIPRREMASKEGIDSSAL*
Ga0138392_1051971	Ga0138392_10519711	F042932	SIDTLADVVQSIAESQQGVEKAITEMHNRVKALETPTDLPLKPKGTQGGDDVGAKVTAPNDPYPVGQQAKLDSDRTDRNPPKKDPAGLKMQEKPVNKAEPEEVVEGFEPEMVTKSQHEFSTETPRPGSAIETVDKSFAKDFSPILKDARAEGYEGLSKVAQNILSGKYYKPTPEEIGGF*
Ga0138392_1053019	Ga0138392_10530192	F060053	MAFGLIPAGTITRETIISTRRIPIAGTTTITKGNVCELVGGYLANSPTTATVDVNHFVALETIDNSGGSAGDLSAPVAVSGHYVTVVADGAIRPGARLQISASTVGQVITTGGGGNKQIGWYTGKEGGTIAKAATTPFQETFTDDSDFPPVAAADGDIIEIYLGL*
Ga0138392_1053019	Ga0138392_10530193	F021318	MQAKINKREIDYEGQQLWLNPVDKTVYATDGAPTYSFSEVNGTPIYNYNSHFDAVKTAKDKLGTSYYHDAFVDQEFKSLAEDYVSDVKSGGRQRQAALRSSVNSAVDIVNVWETVLGKRDRVYAAKNLAKEIAVPNLLISIDTVTKFTGMEKLDEGMRARVKELPYTRATFTAAKYGLKFIIHEEARLKNVHNVLQDSIQVASTKIEQRQSFDVIDVVETNTAQAAIAVWDTFVASTDRSTGDPTIDIGIASLNIEGSGVGGRLNRVGMHQLTFAKFTGNSFLRGVASVGARDYNY
Ga0138392_1053037	Ga0138392_10530371	F006551	TLRAFLRKIRIAAGKDPNVFLGSHEVYSEIQGLYMPSVRIPNPYGEALVQIDVNGIQSFKGTGVGIHVDSIYGIPFIPSKDAPSSSSDSSEVGRLFAFDTSDAEGYGYPRIGIQIAIPTEYYEATRRSPGYPFVNNAFVEKGVFRTMGETVCRHFRSQGKIRDIKL
Ga0138392_1055391	Ga0138392_10553912	F036429	MATVKSVEITNLDATPRTTLEAASAGGKLRVWMDTIAVGTGDLDDDDIIILGQVPSNAKIVSLMIYNDDLNSGSGTHNVGLYNGPQAYTISGTTTAAAAVIDEDCYVTDSQAFRAAVKEPVELLAETRDINAIANFVWEDGGLSEDPKVPLRLAVTMSATGTAVAGDITLVVKYTID
Ga0138392_1055433	Ga0138392_10554331	F002753	SDRFTPTAFETESVKLTDSDRFTPVDFATESVNDTDSDRFTPAVFDVSSVKDIDSDRFTPAVFEIESVNNTVSDRFTPAVFEIESVNDTVSDRFTPAAFEIESVNNTVSDRFTPAVFDIESANDTDSVRFTPATFDIESANDTDSDRFTPAALDVSSANDTDSVRFTPAVFEIESVKLTVSDRFTPAVFEIESVNDTVSDRFTPAAVDIESVNNTISD
Ga0138392_1055680	Ga0138392_10556802	F055787	GKETTNDQSKLSIQGAIGKTELVQKSEHTFTTETPRPNAALENVDKSASDLSPILKDAREAGFESLSTVARNILNGKYYVPTADEVGRY*
Ga0138392_1075102	Ga0138392_10751021	F050311	MRALRTKICTYAIALLASIGFATATLAGSSDFSGVWIAGHAELNVVAIDGTHSQTTATHEVGKGTVGGFAPTAGWELGFNLPLGDTFFITVGFADGGGDSAAIAEFDDSKGVADVTLHASNPSWWYIAPSISVFDNSAVYFKWGQAHADLKAIGDVIGGPNNIE
Ga0138392_1087373	Ga0138392_10873732	F062154	MQSRRNAVGVNGVKVLSVVNARPERLVNNVANGVRAPSVVNARPERLVSGVRVPSVVNVRPELVVSVVRVDHSSVVAVVREDQVVFCGCSL*
Ga0138392_1097406	Ga0138392_10974062	F071320	VISWEATVSQGWEKIARDDKLYSMASRVPVFDSDIPLRKSVFSLRNPSSGSRNNPDRLYSSSDCRS*
Ga0138392_1104531	Ga0138392_11045312	F025846	MFLVTVPMVNLTVAMDLVSMAHGHVTVIVTVPMAQMKPIVLLHHVKTKVYGIVAMANVFQHHMYVMAQVNFVTQAGLQTVY
Ga0138392_1109565	Ga0138392_11095653	F067833	VYGIVAMANVFQQAMFVTAQVNSVTQVGVLTVPMAQMKA*
Ga0138392_1123051	Ga0138392_11230512	F050311	MKALRTKICAYAIALLASIGFATQTLAGSSEFAGIFIAGHAELNVVAIDGTHTDGSTNARDQKGVTSGTIGGFAPTAGYEIGFNLPLGDTFFVTVGYADGGGESAAIATSTSPDNNSDVSIHASNPSWVYIAPSISVFDNSAVYFK
Ga0138392_1128513	Ga0138392_11285131	F006551	LTDDTLRAFLRKIRIAAGKDPNVFLGSHEVYSEIQGLYMPSVRIPNPYGESLVQIDVNGIQTFKGTGVGIHVDSIYGIPFIPSKDAPSSSSDSSEVGRLFAFDTSDAEGYGYPRIGIQIAIPTEYYEATRRSPGYPFVNNAFVEKGVFRTMGETVCRHFRSQGKIRDI
Ga0138392_1128932	Ga0138392_11289322	F040684	VFSQGKPCCKNKNCKGKVACKFNRANIDVNKDGTVIEAGTQIATAGVQCPLSAQNTSINKKNCTNCAKSAWWKFWGKKKGCCNTNS*
Ga0138392_1130200	Ga0138392_11302001	F042932	EEQVDQVEITKSDEEEQISYENTVAKSIDTLADVVQSIAQSQQGVEKAVSEIVDRVKALETPSDLPLSPKGTLGGDDVGAKVTAPNDPYPVGDQVGLDSDRRSKNPPKKDPAGLKMQEKPVNKAVEDEPEEVVEESRPEMVTKSQHEFSTETPRPGSAIETVDKSFTKDFSPILKDAREQGYEGLNIVAQNILSGKYYKPTPEEIGGF*
Ga0138392_1130442	Ga0138392_11304421	F013190	ARLIILENSSMRTPNFMSLSQLYFSNAELGQEMSISATCDGSIPLNEMPSTVASKVASSTKVDIAEIIAFHSLEVFVLAENSNLIK*
Ga0138392_1134258	Ga0138392_11342581	F074005	MVQIRTIDELEALYYGYNRNLLRKADAPATTSTVGVFNAIYGAYAWAQLNLEANAFGILPKYPW
Ga0138392_1137793	Ga0138392_11377931	F006551	TKDFETLDRIVSSGAEEGSLGGSQTGNYDPWAANATIDRDSGTDFDSTVESASGTIGTNGVLTDDTLRTFLRKIRIAAGKDPNVFLGSHEVYSEIQGLYMPSVRIPNPYGETLVQVDVNGIQTFKGTGVGIHVDSIYGIPFIPSKDAPSNASDSSEVGRLFALDTSDAEGYGYPRIGIQIAIPTEYYEATRRTPAYPFVNNAFVEKGVYRTMGETVCRHFKS
Ga0138392_1139128	Ga0138392_11391281	F052659	MLLSGNPGTETRSAVFIDGRLISSIPELNYQTIDKLQQGGVPDKVSWMKPSLRGRLRLVKLQAQERNLTIEDLNQSIRSKWVFLWAEV*
Ga0138392_1146061	Ga0138392_11460611	F050311	MKALRMKIYAYAIALLASIGFVTPTLAGSSDFSGIWIAAHAELNVVAISGTHTDNNAGDADIGARATQGTAGGFAPTAGWELGFNLPLGDTFFVTVGYADGGGKSAAILKAEDIDGKNDADITLHAANPSWFYIAPSISIYDNSAVYFKIGQATADLKAIGDVTGNPGNITGDMWGIGTT
Ga0138392_1146885	Ga0138392_11468851	F063612	LQSVAGGSPADDAASVAEESGLKIPRRGTGSKEDVYSPAL*
Ga0138392_1149521	Ga0138392_11495212	F088935	MTSIGGLDVAFGARMQVVRTNVLCLALAGTGLVNATTVPKYILNTYKEGLKGTVIEPDFLYIYEISEINVSSGFTTAAVMDGLFNQDNDGDGTADTTALEVNGVLRDIRQTPLAVNSAFADTTASHADFSVATPLHTYDNIQGNLALESVISLSAMALDDTTADQANTGVFSDNANADLNAMAGLFPQAIQ
Ga0138392_1149803	Ga0138392_11498031	F093997	PASDKGGLKMQKKSDDDTELIEKAEHSFNTETPRPNASIENVDKSIKDSSLILKDARAEGYEGLSQVARNILNGKYYVPSDDEVRGF*
Ga0138392_1150876	Ga0138392_11508761	F078927	MANVDKAFGLRPYKGAGWPVQQANKYNISPSSGYGT

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

3300011313: Marine microbial communities from the Southern Atlantic ocean - KN S17 Bottom_A metaT (Metagenome Metatranscriptome) (version 2)

Overview

Ecosystem and Geography

Associated Families

Associated Scaffolds

Sequences