3300011266: Acid mine drainage microbial communities from Malanjkhand copper mine, India - M16 k-mer 55

Overview

Basic Information

• IMG/M Taxon OID: 3300011266
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0121499 | Gp0175552 | Ga0151622
• Sample Name: Acid mine drainage microbial communities from Malanjkhand copper mine, India - M16 k-mer 55
• Sequencing Status: Permanent Draft
• Sequencing Center: Xcelris labs Ltd
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 263997598
• Sequencing Scaffolds: 16
• Novel Protein Genes: 17
• Associated Families: 17

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Terrabacteria group	2
All Organisms → cellular organisms → Bacteria	6
All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	1
Not Available	3
All Organisms → cellular organisms → Bacteria → Nitrospirae → unclassified Nitrospirae → Nitrospirae bacterium	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Acid Mine Drainage Microbial Communities From Malanjkhand Copper Mine, India
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Freshwater → Groundwater → Acid Mine Drainage → Sediment → Acid Mine Drainage Microbial Communities From Malanjkhand Copper Mine, India

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): aquatic biome → acid mine drainage → sediment
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Sediment (non-saline)

Location Information

• Location: Malanjkhand , India
• Coordinates
  • Lat. (^o): 22.023017
  • Long. (^o): 80.732183
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002347	Metagenome / Metatranscriptome	568	Y
F010006	Metagenome / Metatranscriptome	310	Y
F012612	Metagenome	279	Y
F013334	Metagenome / Metatranscriptome	272	Y
F016087	Metagenome / Metatranscriptome	250	Y
F021763	Metagenome / Metatranscriptome	217	Y
F026036	Metagenome / Metatranscriptome	199	Y
F041845	Metagenome	159	Y
F042529	Metagenome	158	Y
F052268	Metagenome	143	Y
F060367	Metagenome / Metatranscriptome	133	Y
F079180	Metagenome / Metatranscriptome	116	Y
F082782	Metagenome / Metatranscriptome	113	Y
F082980	Metagenome / Metatranscriptome	113	Y
F084777	Metagenome / Metatranscriptome	112	Y
F094068	Metagenome / Metatranscriptome	106	Y
F103675	Metagenome	101	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0151622_1010461	All Organisms → cellular organisms → Bacteria → Terrabacteria group	741
Ga0151622_1013095	All Organisms → cellular organisms → Bacteria	9005
Ga0151622_1048557	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae	3389
Ga0151622_1051142	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1927
Ga0151622_1062299	All Organisms → cellular organisms → Bacteria	720
Ga0151622_1077689	All Organisms → cellular organisms → Bacteria	905
Ga0151622_1081543	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	1297
Ga0151622_1110776	All Organisms → cellular organisms → Bacteria → Terrabacteria group	2532
Ga0151622_1145741	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	572
Ga0151622_1150887	All Organisms → cellular organisms → Bacteria	4302
Ga0151622_1213732	All Organisms → cellular organisms → Bacteria	1228
Ga0151622_1304011	Not Available	550
Ga0151622_1383522	Not Available	518
Ga0151622_1429992	All Organisms → cellular organisms → Bacteria → Nitrospirae → unclassified Nitrospirae → Nitrospirae bacterium	632
Ga0151622_1509443	Not Available	752
Ga0151622_1519071	All Organisms → cellular organisms → Bacteria	662

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0151622_1010461	Ga0151622_10104611	F010006	GRASQVTVRRAPRRPALIPNENEVTAMAEPMGSRHAAEIARAKQTPHLHEPRLVVSRDVAGERLLDRIADLVNRLIGSMWLFVAITTGIVVWLFAGNFVGFDKTPWPLLLTLLNLPQLSIMISLQVSANRAQAASDARAMADHATLVALHQLAKRQVAILDGQNEVLEVVRRAVAAGEPRSQL*
Ga0151622_1013095	Ga0151622_101309510	F082782	VHVTAEACEALARLLARRNSPDRCLRLSTAQGNYRFILDEPIEQDITYHHDERIVLVVSETVSRDLWGITIDCAEEEGRRKLIFRKAKGGEPFEAIRDDAQVVPPQWRASEHERLLAEIAEIGRQIASLRGGSKSMLRDQLQLLEAAKQEKWDAIRTLWAGDGGWHKRNGTTVASPPAD*
Ga0151622_1048557	Ga0151622_10485573	F079180	MALFKEDKSAAFIGLIVTAALLFIMAFTIVTLTNKKYAGERGTTATETK*
Ga0151622_1051142	Ga0151622_10511422	F013334	MGRNKVKPEQASKVLMRMPTLRSFGEGCTRGEVIDKRTHAIRRGSGYGTSVGWFVVTGGDPSRTRVAASASHLAVVTAGVGRGSRSVDAG*
Ga0151622_1062299	Ga0151622_10622991	F103675	VVRPAATGLATAFYRLYLLDALAAEPARPTALLARIASERLPLASGGFSRALHSLLEGGYLVACEEGRV
Ga0151622_1077689	Ga0151622_10776891	F052268	DWIGFQYNSANETRKTYPGLPGRWSGRPYDFVAGGAGLKFPGLPAEVTGCLDGT*
Ga0151622_1081543	Ga0151622_10815432	F021763	VCLVCVSAQRPVIVAWRLLQGTASEKGREAEVTRELVEQASRLGGGDCIELLPADALYADGPLIAWLAYEKGIDVLVPLPSDRLMVRDALGMAQRDLLTWTRHRYVHTVQGHKQARTIAVASVGAMTSWDSFTAAARGYGVPDASLWVTLVREIEPEEKPLNDSWALVSTRRFANGYAAFQAYRPRWHIENDGYRELKEGFGLEQQRWGRDASAAHCRTTLTLLAFNTAQIYRCRGGQRLATLGIRRLRRQSQAELGRSPVVLFMDDCYGVLAVEELLSVVGFPARQGLLPALHLPNRPHGPT*
Ga0151622_1110776	Ga0151622_11107763	F012612	MWEMPDGTQIRYLGTVTSDAGLREFVLRFMAAEGASWDASKWDERVLAAAFLRRFGEAVAVTRERAAGRMVLVLRPVMTATGA*
Ga0151622_1145741	Ga0151622_11457411	F026036	PRSGMKSSSRRETVPHAGIAGRPLPAFALAFLLALVVLPVTAQAGVSLTEMARLEASEEATIDGTRSLFRGYLSLGLLPEAASLLERRVRMGMFPLQEAIPFFENVVAEQGRFDDPRRLVAVCESAIRSGVRTSAVLYHYGTGLRGIGGRFGDASSALAQVGTESPYRFLAVFSLGQIAAEKGEIPSALD
Ga0151622_1150887	Ga0151622_11508874	F042529	MERIVLAIRREHADALLDGTATVERRTVPPKRLPARAYLAVVGTRSVAGECVLGPPTGRSGAGWALPVTRARRYRRPRPVGDYGLTKVPRSFRYV*
Ga0151622_1213732	Ga0151622_12137321	F060367	XXXSTGHHIGSPVKVATAIDGATDYPIALGRQTYQDSAFRSWAAGNLTADPTMPGHLAVVWSDMRNSDTPAPADPYTATTNSDVVVSQSFDYGQTWSGPTALEISNDQFMPWGAYDTNGLLRIGFFDRSYDSANHKYGYTLATETAAGSLAFTTTQVTTALSDPTKDTRWFS
Ga0151622_1304011	Ga0151622_13040112	F094068	IPHDSREEVMKKGMTQTWVSVLGMAFIIWLSITVSVPLEVSAETPCCSITNIDVKTGIVTAKNTSTGETFEFRLVAAGQIRNIRIGDQVSPDFQTRAVTVHSFQPVDGILIKPPKHPAQIK*
Ga0151622_1383522	Ga0151622_13835221	F041845	MPLELSVLEKLEIAHRLVAEVLGRTPQLYDCRLDQALLVLGLSIKRAQRSPQMRLRLPPDRREESFLF*
Ga0151622_1429992	Ga0151622_14299921	F082980	YAKAPNTLYEGQYRRAEREGECPHTQIAVVVDGRKAGTVMHVCADEKCQTHRQSSRYEISPQEREQRRKLALAVRVQKEARARILQAVRTKLPATLARADFEMVALDYFKRLGHDNHHRLFQVYGWEEKKTKTSWGGISVDHEKLAEARIRAMTAADLNRFMVACALVPDLYCPGYSSAETLSKEANLMRAAARYKIDASKITAKVLREL
Ga0151622_1509443	Ga0151622_15094432	F016087	MKGGAMERFWNIMGGLLDYFEYLGLVLLFAALAFSVGYHMGFSVGLDTKVTWVGDQYTMKLTGNGR
Ga0151622_1519071	Ga0151622_15190711	F084777	XXXKSANALVGWLLQQAADRADANYQPKAGQTCKGRETLGVQGLFGGFQLERDYYYHPGKAQGHHPADAALGLEVG
Ga0151622_1519071	Ga0151622_15190712	F002347	NQPDKTRLWEQIAAIPAMERGTLSPHSSGRHLKLQSWQEGKNHTRHVSADELPAVHSALAGYAQYRKLTDQYADRVIQETRQNIAAAKKSIAPASRPPRPRGRNPAPDRPL*