3300011255: Marine sediment microbial communities from Japan Sea near Toyama Prefecture, Japan - 2015_5, permeate

Overview

Basic Information

• IMG/M Taxon OID: 3300011255
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0121704 | Gp0173495 | Ga0151667
• Sample Name: Marine sediment microbial communities from Japan Sea near Toyama Prefecture, Japan - 2015_5, permeate
• Sequencing Status: Permanent Draft
• Sequencing Center: Toyama Prefectural University
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 99852466
• Sequencing Scaffolds: 3
• Novel Protein Genes: 4
• Associated Families: 4

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	1
All Organisms → Viruses → unclassified viruses → Virus sp.	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Bacillales → Bacillaceae → Calidifontibacillus/Schinkia group → Schinkia → Schinkia azotoformans → Schinkia azotoformans LMG 9581	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Environmental Dna From Seawater And Marine Sediment
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Marine → Coastal → Unclassified → Marine → Environmental Dna From Seawater And Marine Sediment

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): marine benthic biome → marine benthic feature → marine sediment
• Earth Microbiome Project Ontology (EMPO): Free-living → Saline → Water (saline)

Location Information

• Location: Japan Sea near Toyama Prefecture, JAPAN
• Coordinates
  • Lat. (^o): 37.31041
  • Long. (^o): 137.23108
  • Alt. (m): N/A
  • Depth (m): 11

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001611	Metagenome / Metatranscriptome	663	N
F006971	Metagenome / Metatranscriptome	361	Y
F036294	Metagenome / Metatranscriptome	170	Y
F066838	Metagenome / Metatranscriptome	126	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0151667_1004005	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	1113
Ga0151667_1092812	All Organisms → Viruses → unclassified viruses → Virus sp.	662
Ga0151667_1093650	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Bacillales → Bacillaceae → Calidifontibacillus/Schinkia group → Schinkia → Schinkia azotoformans → Schinkia azotoformans LMG 9581	537

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0151667_1004005	Ga0151667_10040052	F036294	MDRGSSDEAIVGVKPVADEDAVTYLRIKLSESGRDAGAEGRNM*
Ga0151667_1092812	Ga0151667_10928121	F066838	LAQEFFIKSADLENKVRQLLPSQGGLGAGFDLSASTQIVPIIDLTESAEGSNLRQDLQKALSTAGTSYTATSTTTVFNNTGFVRNFGTVY
Ga0151667_1092812	Ga0151667_10928122	F001611	MPLVQKTLTLAAGATSDNILANTNYEFVDGNVRLRVASAVDTAGTSATADTFLNVSVNNAEYSKDVSVPALVSGQPFGVLNGAYLNNDLLTTGSQRNRVLVRFTNDTSATRTIRCGVFIGG*
Ga0151667_1093650	Ga0151667_10936501	F006971	MTYQGIEYKKHQKVKFVIPTDNRIIDPQTKRILWKYGTIQFLANNKISAWVLEKGTKEPIKISLFCILPVH*