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Sample 3300011200
3300011200: Arctic soil microbial communities form glacier forefield, Midre Lovenbreen, Svalbard, Norway (Sample 6 - S13.3.30.a - transect 3, age 5 years, surface depth)
Overview
| Basic Information |
| IMG/M Taxon OID | 3300011200 Open in IMG/M |
GOLD Reference
(Study | Sequencing Project | Analysis Project) | Gs0121480 | Gp0155457 | Ga0137471 |
| Sample Name | Arctic soil microbial communities form glacier forefield, Midre Lovenbreen, Svalbard, Norway (Sample 6 - S13.3.30.a - transect 3, age 5 years, surface depth) |
| Sequencing Status | Permanent Draft |
| Sequencing Center | University of Bristol |
| Published? | Y |
| Use Policy | Open |
| Dataset Contents |
| Total Genome Size | 16375348 |
| Sequencing Scaffolds | 4 |
| Novel Protein Genes | 4 |
| Associated Families | 4 |
| Dataset Phylogeny |
| Taxonomy Groups | Number of Scaffolds |
|---|
| All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → Acidimicrobiales → environmental samples → uncultured Acidimicrobiales bacterium | 1 |
| All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Intrasporangiaceae → Phycicoccus → unclassified Phycicoccus → Phycicoccus sp. | 1 |
| All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium | 1 |
| Not Available | 1 |
Ecosystem and Geography
| Ecosystem Assignment (GOLD) |
| Name | Metagenomes Of Arctic Soils |
| Type | Environmental |
| Taxonomy | Environmental → Terrestrial → Soil → Unclassified → Unclassified → Glacier Forefield Soil → Metagenomes Of Arctic Soils |
| Alternative Ecosystem Assignments |
| Environment Ontology (ENVO) | terrestrial biome → glacial feature → soil |
| Earth Microbiome Project Ontology (EMPO) | Free-living → Non-saline → Water (non-saline) |
| Location Information |
| Location | Norway: Midre Lovenbreen, Svalbard |
| Coordinates | Lat. (o) | 79.10444444 | Long. (o) | 12.27888889 | Alt. (m) | N/A | Depth (m) | 0 |
Location on Map |
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Associated Families
| Family | Category | Number of Sequences | 3D Structure? |
|---|
| F065744 | Metagenome | 127 | Y |
| F067546 | Metagenome | 125 | Y |
| F092942 | Metagenome / Metatranscriptome | 107 | Y |
| F096250 | Metagenome | 105 | Y |
Associated Scaffolds
| Scaffold | Taxonomy | Length | IMG/M Link |
|---|
| Ga0137471_100114 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → Acidimicrobiales → environmental samples → uncultured Acidimicrobiales bacterium | 2637 | Open in IMG/M |
| Ga0137471_102497 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Intrasporangiaceae → Phycicoccus → unclassified Phycicoccus → Phycicoccus sp. | 975 | Open in IMG/M |
| Ga0137471_102585 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium | 959 | Open in IMG/M |
| Ga0137471_104687 | Not Available | 699 | Open in IMG/M |
Sequences
| Scaffold ID | Protein ID | Family | Sequence |
|---|
| Ga0137471_100114 | Ga0137471_1001142 | F067546 | MTPVAARRAPVTVRTDDGAVVLVLSDALDHTVARVLIDAVTSAISTSPQRVDIDLRALVSWTDEGARALVACRELCRDLPDGLHYRTGRGPGREALLAAYA* |
| Ga0137471_102497 | Ga0137471_1024972 | F065744 | MQDKVNAPARPKGPNASAIVAGLVAIVLAGLIIANETTAWNVDWSALGPGAIVVVGVVLAVIGAIGLVRRHDEV* |
| Ga0137471_102585 | Ga0137471_1025852 | F092942 | MEEQHVRDRAEVLCAALVTGDIELATQDFSKELRQNLGEVLALLPLPLSEA |
| Ga0137471_104687 | Ga0137471_1046872 | F096250 | MRAGLSAWLICSTICIISLAYGQLALSAYFLALSCVVPGFVAKQLRMRSRL* |
