Metagenome Family F096250

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F096250
Family Type	Metagenome
Number of Sequences	105
Average Sequence Length	51 residues
Representative Sequence	MKAGMGAWLICSTICIISLAYGQLALSAYFLALSCVMPGYVAKELRLRRRL
Number of Associated Samples	65
Number of Associated Scaffolds	105

Quality Assessment
Transcriptomic Evidence	No
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	90.48 %
% of genes near scaffold ends (potentially truncated)	10.48 %
% of genes from short scaffolds (< 2000 bps)	63.81 %
Associated GOLD sequencing projects	54
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.33

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (86.667 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Permafrost → Arctic Peat Soil (43.809 % of family members)
Environment Ontology (ENVO)	Unclassified (41.905 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (86.667 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 58.23% β-sheet: 0.00% Coil/Unstructured: 41.77%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.33
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.33
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 105 Family Scaffolds
PF13483	Lactamase_B_3	51.43
PF00248	Aldo_ket_red	14.29
PF00005	ABC_tran	11.43
PF00557	Peptidase_M24	2.86
PF00480	ROK	2.86
PF05977	MFS_3	0.95
PF13649	Methyltransf_25	0.95
PF11611	DUF4352	0.95
PF00589	Phage_integrase	0.95
PF02548	Pantoate_transf	0.95
PF13520	AA_permease_2	0.95
PF00196	GerE	0.95
PF13411	MerR_1	0.95
PF00120	Gln-synt_C	0.95
PF01183	Glyco_hydro_25	0.95
PF00072	Response_reg	0.95
PF13602	ADH_zinc_N_2	0.95

COG ID	Name	Functional Category	% Frequency in 105 Family Scaffolds
COG1940	Sugar kinase of the NBD/HSP70 family, may contain an N-terminal HTH domain	Transcription [K]	5.71
COG0413	Ketopantoate hydroxymethyltransferase	Coenzyme transport and metabolism [H]	0.95
COG2814	Predicted arabinose efflux permease AraJ, MFS family	Carbohydrate transport and metabolism [G]	0.95
COG3757	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	Cell wall/membrane/envelope biogenesis [M]	0.95

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	86.67 %
Unclassified	root	N/A	13.33 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	86.67 %
Unclassified	root	N/A	13.33 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	86.67 %
Unclassified	root	N/A	13.33 %

Name	Rank	Taxonomy	Distribution
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	80.95 %
Unclassified	root	N/A	13.33 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	1.90 %

Name	Rank	Taxonomy	Distribution
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	80.95 %
Unclassified	root	N/A	13.33 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1.90 %

Name	Rank	Taxonomy	Distribution
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	67.62 %
Unclassified	root	N/A	13.33 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1.90 %

Name	Rank	Taxonomy	Distribution
Micrococcales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales	42.86 %
Unclassified	root	N/A	13.33 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	10.48 %
Rhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae	1.90 %
Propionibacteriales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales	0.95 %

Name	Rank	Taxonomy	Distribution
Intrasporangiaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Intrasporangiaceae	31.43 %
Unclassified	root	N/A	13.33 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	10.48 %
Shinella	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae → Shinella	1.90 %
Nocardioidaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Nocardioidaceae	0.95 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	13.33 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	10.48 %
Phycicoccus	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Intrasporangiaceae → Phycicoccus	3.81 %
Shinella yambaruensis	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae → Shinella → Shinella yambaruensis	1.90 %
Knoellia	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Intrasporangiaceae → Knoellia	1.90 %
Terracoccus	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Intrasporangiaceae → Terracoccus	0.95 %
Nocardioides	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Nocardioidaceae → Nocardioides	0.95 %
Pedococcus	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Intrasporangiaceae → Pedococcus	0.95 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	13.33 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	10.48 %
unclassified Phycicoccus	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Intrasporangiaceae → Phycicoccus → unclassified Phycicoccus	3.81 %
Shinella yambaruensis	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae → Shinella → Shinella yambaruensis	1.90 %
Pedococcus cremeus	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Intrasporangiaceae → Pedococcus → Pedococcus cremeus	0.95 %
unclassified Knoellia	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Intrasporangiaceae → Knoellia → unclassified Knoellia	0.95 %
unclassified Terracoccus	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Intrasporangiaceae → Terracoccus → unclassified Terracoccus	0.95 %
Nocardioides	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Nocardioidaceae → Nocardioides	0.95 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	13.33 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	10.48 %
Phycicoccus sp.	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Intrasporangiaceae → Phycicoccus → unclassified Phycicoccus → Phycicoccus sp.	3.81 %
Shinella yambaruensis	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae → Shinella → Shinella yambaruensis	1.90 %
Terracoccus sp. 273MFTsu3.1	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Intrasporangiaceae → Terracoccus → unclassified Terracoccus → Terracoccus sp. 273MFTsu3.1	0.95 %
Knoellia sp. Soil729	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Intrasporangiaceae → Knoellia → unclassified Knoellia → Knoellia sp. Soil729	0.95 %
Pedococcus cremeus	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Intrasporangiaceae → Pedococcus → Pedococcus cremeus	0.95 %
Nocardioides	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Nocardioidaceae → Nocardioides	0.95 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2088090008\|P3_DRAFT_NODE_156645_len_1269_cov_11_583924	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Intrasporangiaceae	1319	Open in IMG/M
2088090008\|P3_DRAFT_NODE_84465_len_1302_cov_9_105990	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1352	Open in IMG/M
2124908032\|Perma_A_C_ConsensusfromContig215847	All Organisms → cellular organisms → Bacteria	937	Open in IMG/M
2124908041\|P3_CLC_ConsensusfromContig136158	All Organisms → cellular organisms → Bacteria	972	Open in IMG/M
2140918006\|ConsensusfromContig48387	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1171	Open in IMG/M
2140918006\|ConsensusfromContig94300	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Intrasporangiaceae → Phycicoccus → unclassified Phycicoccus → Phycicoccus sp.	808	Open in IMG/M
3300000891\|JGI10214J12806_10910905	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	1222	Open in IMG/M
3300001412\|JGI20173J14856_1038649	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	607	Open in IMG/M
3300001534\|A15PFW1_10418974	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae → Shinella → Shinella yambaruensis	673	Open in IMG/M
3300001535\|A3PFW1_10029480	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae → Shinella → Shinella yambaruensis	724	Open in IMG/M
3300002072\|JGIcombinedJ21914_10040974	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	1659	Open in IMG/M
3300002072\|JGIcombinedJ21914_10204494	Not Available	540	Open in IMG/M
3300002549\|JGI24130J36418_10001600	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales	7858	Open in IMG/M
3300002549\|JGI24130J36418_10001902	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Intrasporangiaceae → Terracoccus → unclassified Terracoccus → Terracoccus sp. 273MFTsu3.1	7271	Open in IMG/M
3300002564\|JGI24134J36421_10003426	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Intrasporangiaceae	5284	Open in IMG/M
3300002564\|JGI24134J36421_10013272	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales	2675	Open in IMG/M
3300002564\|JGI24134J36421_10062810	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	991	Open in IMG/M
3300002564\|JGI24134J36421_10077971	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	842	Open in IMG/M
3300004779\|Ga0062380_10013708	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	2290	Open in IMG/M
3300004782\|Ga0062382_10286772	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	748	Open in IMG/M
3300005045\|Ga0071328_148929	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales	7002	Open in IMG/M
3300005947\|Ga0066794_10009126	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales	2770	Open in IMG/M
3300005994\|Ga0066789_10020770	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	2911	Open in IMG/M
3300006640\|Ga0075527_10000956	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Intrasporangiaceae	6456	Open in IMG/M
3300006640\|Ga0075527_10084021	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	873	Open in IMG/M
3300006640\|Ga0075527_10131198	Not Available	703	Open in IMG/M
3300006864\|Ga0066797_1046384	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	1529	Open in IMG/M
3300006864\|Ga0066797_1055029	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1399	Open in IMG/M
3300006949\|Ga0075528_10009496	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	2305	Open in IMG/M
3300006949\|Ga0075528_10023184	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	1556	Open in IMG/M
3300006949\|Ga0075528_10160556	Not Available	604	Open in IMG/M
3300006950\|Ga0075524_10078000	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	1399	Open in IMG/M
3300006950\|Ga0075524_10104424	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	1213	Open in IMG/M
3300006950\|Ga0075524_10211197	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	846	Open in IMG/M
3300006972\|Ga0075518_1104237	Not Available	577	Open in IMG/M
3300007740\|Ga0104326_115539	Not Available	1333	Open in IMG/M
3300007740\|Ga0104326_125322	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	1870	Open in IMG/M
3300007821\|Ga0104323_116279	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1373	Open in IMG/M
3300009029\|Ga0066793_10053783	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	2285	Open in IMG/M
3300009029\|Ga0066793_10090413	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1766	Open in IMG/M
3300009029\|Ga0066793_10316687	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	900	Open in IMG/M
3300009029\|Ga0066793_10648890	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	600	Open in IMG/M
3300009029\|Ga0066793_10788408	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Intrasporangiaceae → Knoellia → unclassified Knoellia → Knoellia sp. Soil729	540	Open in IMG/M
3300011200\|Ga0137471_104687	Not Available	699	Open in IMG/M
3300011969\|Ga0120166_1009751	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Intrasporangiaceae	1374	Open in IMG/M
3300011971\|Ga0120175_1000189	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Intrasporangiaceae	22367	Open in IMG/M
3300011971\|Ga0120175_1003579	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Intrasporangiaceae	2808	Open in IMG/M
3300011987\|Ga0120164_1006229	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Intrasporangiaceae	2594	Open in IMG/M
3300011991\|Ga0120153_1046860	Not Available	808	Open in IMG/M
3300011996\|Ga0120156_1074608	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	615	Open in IMG/M
3300011997\|Ga0120162_1017211	Not Available	2388	Open in IMG/M
3300011997\|Ga0120162_1026027	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1728	Open in IMG/M
3300011997\|Ga0120162_1035733	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1332	Open in IMG/M
3300012003\|Ga0120163_1016848	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Intrasporangiaceae → Phycicoccus → unclassified Phycicoccus → Phycicoccus sp.	2264	Open in IMG/M
3300012003\|Ga0120163_1119080	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Intrasporangiaceae → Phycicoccus → unclassified Phycicoccus → Phycicoccus sp.	568	Open in IMG/M
3300012003\|Ga0120163_1139008	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Intrasporangiaceae → Phycicoccus → unclassified Phycicoccus → Phycicoccus sp.	510	Open in IMG/M
3300012005\|Ga0120161_1009329	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Intrasporangiaceae	5041	Open in IMG/M
3300012011\|Ga0120152_1018075	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	2727	Open in IMG/M
3300012011\|Ga0120152_1176639	Not Available	548	Open in IMG/M
3300012014\|Ga0120159_1042647	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Intrasporangiaceae	1482	Open in IMG/M
3300012668\|Ga0157216_10090624	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1493	Open in IMG/M
3300013427\|Ga0120106_1055542	All Organisms → cellular organisms → Bacteria	728	Open in IMG/M
3300014031\|Ga0120173_1016262	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Intrasporangiaceae	1069	Open in IMG/M
3300014820\|Ga0120160_1002784	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales	6887	Open in IMG/M
3300014827\|Ga0120171_1022536	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Intrasporangiaceae	2393	Open in IMG/M
3300014827\|Ga0120171_1131656	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	593	Open in IMG/M
3300015078\|Ga0167660_1000150	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Intrasporangiaceae	15562	Open in IMG/M
3300015086\|Ga0167655_1001003	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Intrasporangiaceae	7931	Open in IMG/M
3300015163\|Ga0167665_1020700	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Intrasporangiaceae	1307	Open in IMG/M
3300015163\|Ga0167665_1091290	Not Available	512	Open in IMG/M
3300015167\|Ga0167661_1009005	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Intrasporangiaceae	1760	Open in IMG/M
3300015189\|Ga0167667_1000306	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales	17673	Open in IMG/M
3300015195\|Ga0167658_1000436	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales	23054	Open in IMG/M
3300015208\|Ga0167664_1005470	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Intrasporangiaceae	5026	Open in IMG/M
3300015208\|Ga0167664_1019295	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Nocardioidaceae → Nocardioides	2412	Open in IMG/M
3300025481\|Ga0208079_1001337	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Intrasporangiaceae	12973	Open in IMG/M
3300025481\|Ga0208079_1015670	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Intrasporangiaceae	2461	Open in IMG/M
3300025505\|Ga0207929_1006636	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales	2267	Open in IMG/M
3300025553\|Ga0208080_1000660	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales	17242	Open in IMG/M
3300025619\|Ga0207926_1018865	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Intrasporangiaceae	2200	Open in IMG/M
3300025692\|Ga0209744_1009534	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Intrasporangiaceae	3761	Open in IMG/M
3300025692\|Ga0209744_1035174	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1913	Open in IMG/M
3300025692\|Ga0209744_1040559	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Intrasporangiaceae	1763	Open in IMG/M
3300025692\|Ga0209744_1047925	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1599	Open in IMG/M
3300025692\|Ga0209744_1086118	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1102	Open in IMG/M
3300025721\|Ga0209587_1001311	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales	11833	Open in IMG/M
3300025739\|Ga0209745_1021131	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2748	Open in IMG/M
3300025739\|Ga0209745_1090624	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Intrasporangiaceae	1037	Open in IMG/M
3300025739\|Ga0209745_1102097	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	956	Open in IMG/M
3300025750\|Ga0209747_1042297	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales	1744	Open in IMG/M
3300025750\|Ga0209747_1229565	Not Available	547	Open in IMG/M
3300025764\|Ga0209539_1064707	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales	1540	Open in IMG/M
3300025764\|Ga0209539_1110862	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1098	Open in IMG/M
3300025829\|Ga0209484_10065679	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Intrasporangiaceae → Knoellia	807	Open in IMG/M
3300025836\|Ga0209748_1286997	Not Available	526	Open in IMG/M
3300025854\|Ga0209176_10014020	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Intrasporangiaceae	1598	Open in IMG/M
3300025854\|Ga0209176_10086155	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	732	Open in IMG/M
3300025857\|Ga0209014_10033666	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2335	Open in IMG/M
3300025864\|Ga0209429_10012959	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Intrasporangiaceae	4295	Open in IMG/M
3300025891\|Ga0209585_10317689	Not Available	626	Open in IMG/M
3300025891\|Ga0209585_10336752	All Organisms → cellular organisms → Bacteria	609	Open in IMG/M
3300025891\|Ga0209585_10480605	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	515	Open in IMG/M
3300026273\|Ga0209881_1120641	Not Available	654	Open in IMG/M
3300026291\|Ga0209890_10002587	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Intrasporangiaceae → Pedococcus → Pedococcus cremeus	7954	Open in IMG/M
3300027831\|Ga0209797_10002923	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Intrasporangiaceae	8533	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	100.00%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	97.14%
Aquatic	Environmental → Aquatic	2.86%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	97.14%
Freshwater	Environmental → Aquatic → Freshwater	2.86%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	86.67%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	10.48%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	2.86%

Habitat	Taxonomy	Distribution
Permafrost	Environmental → Terrestrial → Soil → Unclassified → Permafrost	72.38%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	13.33%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost	10.48%
Unclassified	Environmental → Aquatic → Freshwater → Wetlands → Unclassified	2.86%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	0.95%

Habitat	Taxonomy	Distribution
Arctic Peat Soil	Environmental → Terrestrial → Soil → Unclassified → Permafrost → Arctic Peat Soil	43.81%
Permafrost	Environmental → Terrestrial → Soil → Unclassified → Permafrost → Permafrost	22.86%
Glacier Forefield Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Glacier Forefield Soil	10.48%
Soil	Environmental → Terrestrial → Soil → Unclassified → Permafrost → Soil	5.71%
Soil	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Soil	5.71%
Prmafrost Soil	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Prmafrost Soil	4.76%
Wetland Sediment	Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Wetland Sediment	2.86%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	2.86%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	0.95%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2088090008	Permafrost microbial communities from permafrost in Bonanza Creek, Alaska - Permafrost Layer P3	Environmental	Open in IMG/M
2124908032	Permafrost microbial communities from permafrost in Bonanza Creek, Alaska - Perma_all	Environmental	Open in IMG/M
2124908041	Permafrost microbial communities from permafrost in Bonanza Creek, Alaska - Permafrost Layer P3	Environmental	Open in IMG/M
2140918006	Permafrost microbial communities from permafrost in Bonanza Creek, Alaska - Permafrost Layer P1	Environmental	Open in IMG/M
3300000891	Soil microbial communities from Great Prairies - Wisconsin, Continuous corn soil	Environmental	Open in IMG/M
3300001412	Arctic peat soil from Barrow, Alaska - NGEE Surface sample 210-1 deep-072012	Environmental	Open in IMG/M
3300001534	Permafrost active layer microbial communities from McGill Arctic Research Station, Canada - (A15-PF-7A)- 1 week illumina	Environmental	Open in IMG/M
3300001535	Permafrost active layer microbial communities from McGill Arctic Research Station, Canada - (A3-PF-15A)- 1 week illumina	Environmental	Open in IMG/M
3300002072	Barrow Graham LP Ref core NGADG0011-211 (Barrow Graham LP Ref core NGADG0011-211,NGADG0004-312, ASSEMBLY_DATE=20131005)	Environmental	Open in IMG/M
3300002549	Arctic peat soil from Barrow, Alaska - Barrow Graham LP Ref core NGADG0002-212	Environmental	Open in IMG/M
3300002564	Arctic peat soil from Barrow, Alaska - Barrow Graham LP Ref core NGADG0004-312	Environmental	Open in IMG/M
3300004779	Wetland sediment microbial communities from St. Louis River estuary, USA, under dissolved organic matter induced mercury methylation - T0Bare3Fresh	Environmental	Open in IMG/M
3300004782	Wetland sediment microbial communities from St. Louis River estuary, USA, under dissolved organic matter induced mercury methylation - T4Bare2Fresh	Environmental	Open in IMG/M
3300005045	Permafrost microbial communities from Fox Tunnel, Fairbanks, Alaska, USA	Environmental	Open in IMG/M
3300005947	Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Permafrost soil replicate 2 DNA2013-190	Environmental	Open in IMG/M
3300005994	Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Organic soil replicate 3 DNA2013-049	Environmental	Open in IMG/M
3300006640	Arctic peat soil microbial communities from the Barrow Environmental Observatory site, Barrow, Alaska, USA - NGEE Permafrost305-11B	Environmental	Open in IMG/M
3300006864	Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Permafrost soil replicate 3 DNA2013-193	Environmental	Open in IMG/M
3300006949	Arctic peat soil microbial communities from the Barrow Environmental Observatory site, Barrow, Alaska, USA - NGEE Permafrost159B-16B	Environmental	Open in IMG/M
3300006950	Arctic peat soil microbial communities from the Barrow Environmental Observatory site, Barrow, Alaska, USA - NGEE Permafrost154B-one	Environmental	Open in IMG/M
3300006972	Arctic peat soil microbial communities from the Barrow Environmental Observatory site, Barrow, Alaska, USA - NGEE PermafrostAB136-A	Environmental	Open in IMG/M
3300007740	Permafrost core soil microbial communities from Svalbard, Norway - sample 2-9-2 Soapdenovo	Environmental	Open in IMG/M
3300007821	Permafrost core soil microbial communities from Svalbard, Norway - sample 2-10-2 Soapdenovo	Environmental	Open in IMG/M
3300009029	Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Permafrost soil replicate 1 DNA2013-189	Environmental	Open in IMG/M
3300011200	Arctic soil microbial communities form glacier forefield, Midre Lovenbreen, Svalbard, Norway (Sample 6 - S13.3.30.a - transect 3, age 5 years, surface depth)	Environmental	Open in IMG/M
3300011969	Permafrost microbial communities from Nunavut, Canada - A23_80cm_12M	Environmental	Open in IMG/M
3300011971	Permafrost microbial communities from Nunavut, Canada - A7_80cm_12M	Environmental	Open in IMG/M
3300011987	Permafrost microbial communities from Nunavut, Canada - A20_80cm_0M	Environmental	Open in IMG/M
3300011991	Permafrost microbial communities from Nunavut, Canada - A34_65cm_12M	Environmental	Open in IMG/M
3300011996	Permafrost microbial communities from Nunavut, Canada - A39_65cm_12M	Environmental	Open in IMG/M
3300011997	Permafrost microbial communities from Nunavut, Canada - A15_80cm_18M	Environmental	Open in IMG/M
3300012003	Permafrost microbial communities from Nunavut, Canada - A20_80cm_0.25M	Environmental	Open in IMG/M
3300012005	Permafrost microbial communities from Nunavut, Canada - A15_80cm_0M	Environmental	Open in IMG/M
3300012011	Permafrost microbial communities from Nunavut, Canada - A30_65cm_6M	Environmental	Open in IMG/M
3300012014	Permafrost microbial communities from Nunavut, Canada - A10_80cm_6M	Environmental	Open in IMG/M
3300012668	Arctic soils microbial communities. Combined Assembly of 23 SPs	Environmental	Open in IMG/M
3300013427	Permafrost microbial communities from Nunavut, Canada - A15_35cm_18M	Environmental	Open in IMG/M
3300014031	Permafrost microbial communities from Nunavut, Canada - A35_80cm_0.25M	Environmental	Open in IMG/M
3300014820	Permafrost microbial communities from Nunavut, Canada - A15_80cm_0.25M	Environmental	Open in IMG/M
3300014827	Permafrost microbial communities from Nunavut, Canada - A3_80cm_18M	Environmental	Open in IMG/M
3300015078	Arctic soil microbial communities from a glacier forefield, Storglaci?ren, Tarfala, Sweden (Sample st-11a, vegetated hydrological feature)	Environmental	Open in IMG/M
3300015086	Arctic soil microbial communities from a glacier forefield, Storglaci?ren, Tarfala, Sweden (Sample st-5c, rocky medial moraine)	Environmental	Open in IMG/M
3300015163	Arctic soil microbial communities from a glacier forefield, Rabots glacier, Tarfala, Sweden (Sample Rb1b, glacier snout)	Environmental	Open in IMG/M
3300015167	Arctic soil microbial communities from a glacier forefield, Storglaci?ren, Tarfala, Sweden (Sample st-11b, vegetated hydrological feature)	Environmental	Open in IMG/M
3300015189	Arctic soil microbial communities from a glacier forefield, Rabots glacier, Tarfala, Sweden (Sample Rb2a, glacial moraine)	Environmental	Open in IMG/M
3300015195	Arctic soil microbial communities from a glacier forefield, Storglaci?ren, Tarfala, Sweden (Sample st-6c, vegetation/snow interface)	Environmental	Open in IMG/M
3300015208	Arctic soil microbial communities from a glacier forefield, Storglaci?ren, Tarfala, Sweden (Samples st-15,16,16 pooled, 1st-3rd transect points, snow/rock/ice interface)	Environmental	Open in IMG/M
3300025481	Arctic peat soil from Barrow, Alaska - NGEE Surface sample 210-2 deep-092012 (SPAdes)	Environmental	Open in IMG/M
3300025505	Arctic peat soil from Barrow, Alaska - NGEE Surface sample 53-1 deep-072012 (SPAdes)	Environmental	Open in IMG/M
3300025553	Arctic peat soil from Barrow, Alaska - NGEE Surface sample 210-3 deep-092012 (SPAdes)	Environmental	Open in IMG/M
3300025619	Arctic peat soil from Barrow, Alaska - NGEE Surface sample 210-1 deep-072012 (SPAdes)	Environmental	Open in IMG/M
3300025692	Arctic peat soil from Barrow, Alaska - Barrow Graham LP Ref core NGADG0004-311 (SPAdes)	Environmental	Open in IMG/M
3300025721	Arctic peat soil microbial communities from the Barrow Environmental Observatory site, Barrow, Alaska, USA - NGEE PermafrostL1-D (SPAdes)	Environmental	Open in IMG/M
3300025739	Arctic peat soil from Barrow, Alaska - Barrow Graham LP Ref core NGADG0004-312 (SPAdes)	Environmental	Open in IMG/M
3300025750	Arctic peat soil from Barrow, Alaska - Barrow Graham LP Ref core NGADG0011-311 (SPAdes)	Environmental	Open in IMG/M
3300025764	Arctic peat soil from Barrow, Alaska - Barrow Graham LP Ref core NGADG0011-312 (SPAdes)	Environmental	Open in IMG/M
3300025829	Arctic peat soil microbial communities from the Barrow Environmental Observatory site, Barrow, Alaska, USA - NGEE Permafrost159B-16B (SPAdes)	Environmental	Open in IMG/M
3300025836	Arctic peat soil from Barrow, Alaska - Barrow Graham LP Incubations 004-21A (SPAdes)	Environmental	Open in IMG/M
3300025854	Arctic peat soil microbial communities from the Barrow Environmental Observatory site, Barrow, Alaska, USA - NGEE Permafrost305-11B (SPAdes)	Environmental	Open in IMG/M
3300025857	Arctic peat soil from Barrow, Alaska - Barrow Graham LP Ref core NGADG0002-212 (SPAdes)	Environmental	Open in IMG/M
3300025864	Arctic peat soil from Barrow, Alaska - Barrow Graham LP Ref core NGADG0004-212 (SPAdes)	Environmental	Open in IMG/M
3300025891	Arctic peat soil microbial communities from the Barrow Environmental Observatory site, Barrow, Alaska, USA - NGEE Permafrost154B-one (SPAdes)	Environmental	Open in IMG/M
3300026273	Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Permafrost soil replicate 3 DNA2013-193 (SPAdes)	Environmental	Open in IMG/M
3300026291	Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Organic soil replicate 3 DNA2013-049 (SPAdes)	Environmental	Open in IMG/M
3300027831	Wetland sediment microbial communities from St. Louis River estuary, USA, under dissolved organic matter induced mercury methylation - T0Bare3Fresh (SPAdes)	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
P3_DRAFT_01504260	2088090008	Soil	MKAGMGAWLICSTVCIISLAYGQLALSAYFLALSCVMPGYVAKELRLRQRL
P3_DRAFT_01551560	2088090008	Soil	MSAWLICSTICIISLAYGQLALSAYFLALSCVVPGYVAKQLRMRSRL
Perma_A_C_03666320	2124908032	Soil	MSAWLICSTICIISLAYGQLALSAYFLALSCVMPGYVAKELRMRRRL
P3_CLC_00187480	2124908041	Soil	MRAGVSAWLICSTICIISLAYGQLALSAYFLALSCVMPGYVAKQLRMRRRL
P1_C_00672900	2140918006	Soil	MKTGMVVWLICSALCFTSLAYGQVALSAYFLVLSCVAPPYLAKELRQRRRRSQP
P1_C_00472270	2140918006	Soil	MKAGMGAWLICSTICVLSLAYGQIALSAYFLALSCVLPHYVAKELERRRS
JGI10214J12806_109109052	3300000891	Soil	MKTGMFAWLICSAICFTSLAYGQLALATYFLVLSCVLPPYLAKELRQRRRRRL*
JGI20173J14856_10386492	3300001412	Arctic Peat Soil	RMEPEMKTGMIAWLIFSALCVVSLAYGQLALSAYFLVLSCXAPPFVAKLLRQRRRERS*
A15PFW1_104189742	3300001534	Permafrost	MRTGMGAWLICSTACVISLAYGQLALSAYFLALSCVAPPYVAKELERPGL*
A3PFW1_100294802	3300001535	Permafrost	MRTGMGAWLICSTACVISLAYDQLALSAYFLALSCVAPPYVAKELERPGL*
JGIcombinedJ21914_100409742	3300002072	Arctic Peat Soil	MRVGMAAWLICSTICFLSLVNGELAMSAYFLALSCVLPGYVAKELQRPRT*
JGIcombinedJ21914_102044942	3300002072	Arctic Peat Soil	MKXGMGAWLICSTICIISLAYGQLALSAYFLALSCVTPGYVAKQDRLRRRL*
JGI24130J36418_1000160012	3300002549	Arctic Peat Soil	MKAGMGAXLICSTVCIISLAYGQLALSAYFLALSCVMPGYVAKELRLRRRL*
JGI24130J36418_100019022	3300002549	Arctic Peat Soil	MEPEMKTGMIAWLIFSALCVVSLAYGQLALSAYFLVLSCVAPPFVAKLLRQRRRERS*
JGI24134J36421_100034267	3300002564	Arctic Peat Soil	MRAGMSAWLICSTICIISLAYGQLALSAYFLALSCVVPGYVAKQLRMRSRL*
JGI24134J36421_100132721	3300002564	Arctic Peat Soil	MKAGMGAWLICSTICIISLAYGQVALSAYFLALSCVMPGYVAKQRRLRRRL*
JGI24134J36421_100628102	3300002564	Arctic Peat Soil	MKAGMGAWLICSTVCIISLAYGQLALSAYFLALSCVMPGYVAKQLRRRRL*
JGI24134J36421_100779712	3300002564	Arctic Peat Soil	MWRPLVRREAEMKAGMFAWLMCSAICFTSLAYGQLALSAYFLVLSCVLPPYIAKELRRRHRL*
Ga0062380_100137082	3300004779	Wetland Sediment	MKAGMGAWLICSTVCIISLAYGQLALSAYFLALSCVTPGYVAKQLRRRRL*
Ga0062382_102867722	3300004782	Wetland Sediment	MKAGMGAWLICSTVCIISLAYGQLALSAYFLALSCVTPGYVAKKLRRRRL*
Ga0071328_14892910	3300005045	Permafrost	MKTGMFAWLICSALCFTSLAYGQLALSAYFLVLSCVAPPFLAKELRQRRRRRL*
Ga0066794_100091263	3300005947	Soil	MESGMKTGMFAWLIFSALCFVSLAYGQVALSAYFLALSCVAPPFVAKELRQPRRERS*
Ga0066789_100207703	3300005994	Soil	MKTGMVAWLICSTLCIASFAYGQLVWSAYFLVLSCVLPSYISKERRRRQRL*
Ga0075527_100009563	3300006640	Arctic Peat Soil	MGAWLICSTICIISLAYGKLALSAYFLALSCVMPGYVAKQVRLRRRL*
Ga0075527_100840212	3300006640	Arctic Peat Soil	MKAGMGARLICSTVCIISLAYGQLALSAYFLALSCVMPGYVAKELRLRRRL*
Ga0075527_101311982	3300006640	Arctic Peat Soil	MEPEMKTGMIAWLIFSALCVVSLAYGQLALSAYFLVLSCVAPPFVAKELRQRRRERS*
Ga0066797_10463842	3300006864	Soil	MEPEMKTGMIAWLIFSALCVVSLAYGQLALSAYFLVLSCVAPPFVAKELRQPRRERS*
Ga0066797_10550293	3300006864	Soil	MSVGMAAWLICSTICFLSLVNGELAMSAYLLALSCVLPGYVAKELQRPRT*
Ga0075528_100094962	3300006949	Arctic Peat Soil	MKAGMGAWLICSTVCIISLAYGQLALSAYFLALSCVMPGYVAKELRLRRRL*
Ga0075528_100231842	3300006949	Arctic Peat Soil	MKAGMGAWLICSTIYIISLAYGQLAMSAYFLALSCVMPGYVAKELRLRRRL*
Ga0075528_101605562	3300006949	Arctic Peat Soil	MEPEMKTGMIAWLIFSALCVVSLASGQLALSAYFLVLSCVAPPFVAKLLRQRRRERS*
Ga0075524_100780002	3300006950	Arctic Peat Soil	MKAGMGAWLICSTICVLSLAYGQIALSAYFLALSCVLPHYVAKELERRRS*
Ga0075524_101044242	3300006950	Arctic Peat Soil	MKAGMGAWLICSTVCIISLAYGQLAMSAYFLALSCVMPGYVAKELRLRRRL*
Ga0075524_102111972	3300006950	Arctic Peat Soil	MKAGMFAWLMCSAICFTSLAYGQLALSAYFLVLSCVLPPYIAKELRRRHRL*
Ga0075518_11042372	3300006972	Arctic Peat Soil	MRAGMSAWLICSTICIISIAYGQLALSAYFLALSCVVPGYVSKQLRMRSRL*
Ga0104326_1155393	3300007740	Soil	MKTGMVVWLICAVLCFMSLAFGRVALSAYFLVLSCVAPPYLAKELRQRRRRRS*
Ga0104326_1253222	3300007740	Soil	MGAWLICSTACVISLAYDQLALSAYFLALSCVAPPYVAKELERPGL*
Ga0104323_1162793	3300007821	Soil	MKTGMVVWLICSALCFTSLAYGRVALSAYFLVLSCVAPPYLAKELRQRRRRSQP*
Ga0066793_100537832	3300009029	Prmafrost Soil	MRVGMAAWLICSAICFLSLVNGELAMSAYFLALSCVLPGYVAKELQRPRT*
Ga0066793_100904133	3300009029	Prmafrost Soil	MGAWLICSTICIISLAYGQLALSAYFLALSCVMPGYVAKELRRRSL*
Ga0066793_103166872	3300009029	Prmafrost Soil	MSVIGVTRMEPEMKTGMIAWLIFSALCVVSLAYGQLALSAYFLVLSCVAPPFVAKLLRQRRRERS*
Ga0066793_106488902	3300009029	Prmafrost Soil	MKAGMGAWLICSTVCIISLAYGQLAMSAYFLTLSCVMPGYVAKELRLRRCL*
Ga0066793_107884082	3300009029	Prmafrost Soil	MKTGMFAWLIFSALCFVSLAYGQVALSAYFLALSCVAPPFVAKELRQPRRERS*
Ga0137471_1046872	3300011200	Glacier Forefield Soil	MRAGLSAWLICSTICIISLAYGQLALSAYFLALSCVVPGFVAKQLRMRSRL*
Ga0120166_10097511	3300011969	Permafrost	MGAWLICSTICIISLAYGQLALSAYFLALSCVMPGYVAKELRRRRL*
Ga0120175_100018918	3300011971	Permafrost	MKTGMVVWLICSALCFTSLAYGRVALSAYFLVLSCVAPPYLAKELRQRRRRRT*
Ga0120175_10035796	3300011971	Permafrost	MKAGMGAWLICATICVLGLAYNQIALSAYFLALSCVLPHYLAKELERQRS*
Ga0120164_10062294	3300011987	Permafrost	MKAGMGVWLICSTICVLSLAYGQIALSAYFLALSCVLPHYVAKELERRRS*
Ga0120153_10468601	3300011991	Permafrost	MKAGMGAWLICSTICIISLAYGQLALSAYFLALSCVMPGYVAKELRLRRRL*
Ga0120156_10746082	3300011996	Permafrost	MRAGAVAWLVCSAICCTSLAYGQLALSAYFLALSCVLPPYVAKELQRRRL*
Ga0120162_10172114	3300011997	Permafrost	MKTGMVVWLICSVLCFTSFAYGQVALSAYFLALSCVAPPYSARTRRKNVR*
Ga0120162_10260272	3300011997	Permafrost	MGAWLICSTACVISLAYGQLALSAYFLALSCVAPPYVAKELERPGL*
Ga0120162_10357332	3300011997	Permafrost	MKAGMFAWLICSAICFTSLAYGQLALSAYFLVLSCVLPSYVAKQLRRRRRRL*
Ga0120163_10168483	3300012003	Permafrost	MKAGMFAWLICSAICFTSLAYGQLALSAYFLVLSCVLPSYVAKELRLRRRRL*
Ga0120163_11190801	3300012003	Permafrost	MKAGMGAWLICSTICVLGLAYGQIALSAYFLALSCVLPHYVAKEL
Ga0120163_11390082	3300012003	Permafrost	MKAGMGAWLICSTVCIISLAYSRLALSAYFLALSCVMPGYVAKELRLRRRL*
Ga0120161_10093292	3300012005	Permafrost	MKAGMFAWLICSAICFTSLAYGQLALSAYFLVLSCVLPSYVAKQLRQRRRRL*
Ga0120152_10180752	3300012011	Permafrost	MKAGMGAWLICSTICIISLAYGQLALSAYFLALSCVMPGYVAKALRRRRL*
Ga0120152_11766391	3300012011	Permafrost	MKTGMFVWLICSALCVTSLAYGRVALSAYFLVLSCVAPPYLAKELRQRRRRSQP*
Ga0120159_10426473	3300012014	Permafrost	WLICSTICVLGLAYGQIALSAYFLALSCVLPHYVAKELERRRS*
Ga0157216_100906242	3300012668	Glacier Forefield Soil	MAAWLICSTLCIFSLASGQVALSAYFLALACVTPEYVARQQRRRRL*
Ga0120106_10555423	3300013427	Permafrost	MKAGMGAWLICSTICVLGLAYGQIALSAYFLALSCALPHYVAKELERRRS*
Ga0120173_10162621	3300014031	Permafrost	LDGSEDRMKAGMGVWLICSTICVLSLAYGQIALSAYFLALSCVLPHYVAKELERRRS*
Ga0120160_10027845	3300014820	Permafrost	MKAGMGAWLICSTICVLGLAYGQIALSAYFLALSCVLPHYVAKELERRRS*
Ga0120171_10225364	3300014827	Permafrost	IGLRRRREASTVCIISLAYGQLALSAYFLALSCVMPGYVAKALRRRRL*
Ga0120171_11316562	3300014827	Permafrost	MGAWLICSTICIISLAYGQLALSAYFLALSCVMLGYVAKELRRRRL*
Ga0167660_100015011	3300015078	Glacier Forefield Soil	MKTGMVVWLICSALCFTSLAYGRVALSAYFLVLSCVAPPYLAKELRQRRRRRSQP*
Ga0167655_10010032	3300015086	Glacier Forefield Soil	MKTGMFVWLICSALCVMSLAYGRVALSAYFLVLSCIGPPYLAREIRQRRRKRS*
Ga0167665_10207002	3300015163	Glacier Forefield Soil	MKTGMIVWLICSALCFTSLAYGRVGLSAYFLVLSCVAPPYLAKELRQRRRRS*
Ga0167665_10912902	3300015163	Glacier Forefield Soil	MKTGMFAWLICSAICFASLASGQLALAAYFLVLSCVLPPYLAKQLRQRRRL*
Ga0167661_10090052	3300015167	Glacier Forefield Soil	MKTGMVVWLICAALCFMSLAYGRVALSAYFLVLSCVAPPYLAKELRQRRRSRP*
Ga0167667_100030621	3300015189	Glacier Forefield Soil	MKAGMAAWLICSTICVLSLAYGQLWLSAYFLALSCLAPGFVAKERRHRRL*
Ga0167658_10004365	3300015195	Glacier Forefield Soil	MKTGMVVWLICAVLCFMSLAYGRVALSAYFLVLSCVAPPYLAKELRQRRRRRS*
Ga0167664_10054703	3300015208	Glacier Forefield Soil	MRTGVGAWLICSTICFMSLAYGQLALSAYFLALSCVLPPYVAKGLEQPRP*
Ga0167664_10192953	3300015208	Glacier Forefield Soil	MIAWLICSAICFTSLAYGQLALSAYFLVLSCILPPYLAKELRQRRRRRL*
Ga0208079_10013371	3300025481	Arctic Peat Soil	MKAGMGAWLICSTVCIISLAYGQLALSAYFLALSCVMPGYVAKELRLRRRL
Ga0208079_10156703	3300025481	Arctic Peat Soil	MEPEMKTGMIAWLIFSALCVVSLAYGQLALSAYFLVLSCVAPPFVAKLLRQRRRERS
Ga0207929_10066363	3300025505	Arctic Peat Soil	MKAGMFAWLMCSAICFTSLAYGQLALSAYFLVLSCVLPPYIAKELRRRHRL
Ga0208080_10006606	3300025553	Arctic Peat Soil	MKAGMGARLICSTVCIISLAYGQLALSAYFLALSCVMPGYVAKELRLRRRL
Ga0207926_10188654	3300025619	Arctic Peat Soil	MEPEMKTGMIAWLIFSALCVVSLAYGQLALSAYFLVLSCFAPPFVAKLLRQRRRERS
Ga0209744_10095342	3300025692	Arctic Peat Soil	MKAGMGAWLICSTVCIISLAYGQLALSAYFLALSCVMPGYVAKQLRRRRL
Ga0209744_10351743	3300025692	Arctic Peat Soil	MRAGMSAWLICSTICIISLAYGQLALSAYFLALSCVVPGYVAKQLRMRSRL
Ga0209744_10405591	3300025692	Arctic Peat Soil	MKAGMGAWLICSTICIISLAYGQVALSAYFLALSCVMPGYVAKQRRLRRRL
Ga0209744_10479252	3300025692	Arctic Peat Soil	MRVGMAAWLICSTICFLSLVNGELAMSAYLLALSCVLPGYVAKELQRPRT
Ga0209744_10861182	3300025692	Arctic Peat Soil	MRAGVSAWLICSTICIISLAHGQLALSAYFLALSCVMPGYVAKQLRMRRRL
Ga0209587_10013115	3300025721	Arctic Peat Soil	MGAWLICSTICIISLAYGKLALSAYFLALSCVMPGYVAKQVRLRRRL
Ga0209745_10211312	3300025739	Arctic Peat Soil	MRVGMAAWLICSTICFLSLVNGELAMSAYFLALSCVLPGYVAKELQRPRT
Ga0209745_10906242	3300025739	Arctic Peat Soil	MKTGMIAWLIFSALCFVSLAYGQLALSAYFLVLSCVAPPFVAKELRQRRRERS
Ga0209745_11020972	3300025739	Arctic Peat Soil	MKVGMGAWLICSTICIISLAYGQLALSAYFLALSCVTPGYVAKQDRLRRRL
Ga0209747_10422971	3300025750	Arctic Peat Soil	VGRLDESEDQMKAGMGAWLICSTVCIISLAYGQVALSAYFLALSCVMMGYVAKELRLRRR
Ga0209747_12295651	3300025750	Arctic Peat Soil	KTGMIAWLIFSALCFVSLAYGQLALSAYFLVLSCVAPPFVAKELRQRRRERS
Ga0209539_10647072	3300025764	Arctic Peat Soil	MKAGMFAWVMCSAICFTSLAYGQLALSAYFLVLSCVLPPYIAKELRRRHRL
Ga0209539_11108622	3300025764	Arctic Peat Soil	MRAGMSAWLICSTICIISLAYGQLALSAYFLALSCVVPGYVAKQLWMRSRL
Ga0209484_100656792	3300025829	Arctic Peat Soil	MEPEMKTGMIAWLIFSALCVVSLASGQLALSAYFLVLSCVAPPFVAKLLRQRRREPS
Ga0209748_12869971	3300025836	Arctic Peat Soil	MKTGMAAWLICSTLCIISFAYGELAWAAYFLVLSCVVPSYVSKKLRRRRRRQRL
Ga0209176_100140201	3300025854	Arctic Peat Soil	MSVIGVTRMEPEMKTGMIAWLIFSALCVVSLAYGQLALSAYFLVLSCVAPPFVAKELRQRRRERS
Ga0209176_100861551	3300025854	Arctic Peat Soil	ICSTICIISIAYGQLALSAYFLALSCVVPGYVAKQLRMRSRL
Ga0209014_100336661	3300025857	Arctic Peat Soil	MKAGMGAWLICSTVCIISLAYGQLAMSAYFLALSCVMPGYVAKELRLRRRL
Ga0209429_100129594	3300025864	Arctic Peat Soil	MRVGMAAWLICSTICFLSLVNGELAMPAYFLALSCVLPGYVAKELQRPRT
Ga0209585_103176892	3300025891	Arctic Peat Soil	MKAGMGAWLICSTVCIISLAYGQLALSAYFLALSCVMPGYVAK
Ga0209585_103367521	3300025891	Arctic Peat Soil	MKAGMGAWLICSTVCIISLAYGQLALSAYFLALSCVMPGYVAKELRL
Ga0209585_104806052	3300025891	Arctic Peat Soil	MRAGMGAWLICSTVCIISLAYGQLALSAYFLALSCVMPGYGAKELRLRRRL
Ga0209881_11206412	3300026273	Soil	MSVGMAAWLICSTICFLSLVNGELAMSAYLLALSCVLPGYVAKELQRPRT
Ga0209890_100025873	3300026291	Soil	MKTGMVAWLICSTLCIASFAYGQLVWSAYFLVLSCVLPSYISKERRRRQRL
Ga0209797_100029233	3300027831	Wetland Sediment	MKAGMGAWLICSTVCIISLAYGQLALSAYFLALSCVTPGYVAKQLRRRRL

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome Family F096250

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences