3300010275: Western lowland gorrila individual fecal microbial communities from Wisconsin, USA - Go1022A metagenome

Overview

Basic Information

• IMG/M Taxon OID: 3300010275
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0120398 | Gp0147146 | Ga0129310
• Sample Name: Western lowland gorrila individual fecal microbial communities from Wisconsin, USA - Go1022A metagenome
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 276642441
• Sequencing Scaffolds: 16
• Novel Protein Genes: 17
• Associated Families: 13

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Coriobacteriia → Coriobacteriales → Coriobacteriaceae → Collinsella → unclassified Collinsella → Collinsella sp. 4_8_47FAA	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae	2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium	2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Coprococcus → Coprococcus catus	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia	2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → unclassified Oscillospiraceae → Ruminococcaceae bacterium LM158	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Dorea → Dorea longicatena	2

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Animal Gut Microbial Communities From Fecal Samples From Wisconsin, Usa
• Type: Host-Associated
• Taxonomy: Host-Associated → Mammals → Digestive System → Large Intestine → Fecal → Western Lowland Gorilla Individual Fecal → Animal Gut Microbial Communities From Fecal Samples From Wisconsin, Usa

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal distal gut

Location Information

• Location: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.78
  • Long. (^o): -88.79
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F026489	Metagenome	197	N
F026592	Metagenome / Metatranscriptome	197	Y
F029444	Metagenome	188	Y
F052660	Metagenome	142	N
F056309	Metagenome	137	N
F059106	Metagenome	134	N
F068855	Metagenome	124	N
F070093	Metagenome	123	N
F074899	Metagenome / Metatranscriptome	119	N
F078004	Metagenome	117	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0129310_1001196	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Coriobacteriia → Coriobacteriales → Coriobacteriaceae → Collinsella → unclassified Collinsella → Collinsella sp. 4_8_47FAA	24042
Ga0129310_1002170	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae	15123
Ga0129310_1002549	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	13355
Ga0129310_1003887	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium	9232
Ga0129310_1004336	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae	8407
Ga0129310_1009271	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Coprococcus → Coprococcus catus	4187
Ga0129310_1011659	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	3394
Ga0129310_1014272	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia	2828
Ga0129310_1023553	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → unclassified Oscillospiraceae → Ruminococcaceae bacterium LM158	1818
Ga0129310_1034778	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia	1280

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0129310_1001196	Ga0129310_10011969	F099269	VGELLLLDDLGDRASGASVLASATGDAGVLVSDGSDVLELQNASGAGVDANATSDALVGINYGMSHGSFLSVDRRYRRCASV*
Ga0129310_1002170	Ga0129310_10021708	F074899	MQKFPLDPHRDPHGETCGWKQWNKQAATASFLDKKLPKNLVQQGMEGSTAVGKDEVGSSNLPSSSNINRLNHLI*
Ga0129310_1002549	Ga0129310_10025494	F052660	MCILRILPENTPEKIGQERAGTEWTEDKSKIRLCIRNRSCGRFLHSGILMGIALPIPSHRAKSHDFACWWPAVAGHSRSADALPGKSNS*
Ga0129310_1003887	Ga0129310_10038878	F087335	MCIKERMKDMIELYFNDANLLPENREEEQYAEAALNNILAGKMADTGMCIMPCFYDAPLRNGLLYHLDDGTMLRIRPILNEAGEPELLIRCVTEETVEEMMEVVKP*
Ga0129310_1004336	Ga0129310_10043362	F052660	MRILRVLPENTPEKIGQERAGTEWTVVKSKIRLCIRNRSYRRFFYGGILMGIVLPIPSHRAKSHDFAHWWPAAAGHSRSADALPGKSNF*
Ga0129310_1009271	Ga0129310_10092715	F059106	LLQTFVWIVDLKVREHLTEYLKKDIKYHRVIIGVFV*
Ga0129310_1011659	Ga0129310_10116591	F026592	SPQGIAALAVQGGVATLTERSDATFAGKQFSSADRE*
Ga0129310_1014272	Ga0129310_10142724	F068855	VPTVEAQGPQARKTLALQGLQAEKENENANVRNVGWLHSFDADYHYRGSDLHYHVNVSAALSEGGAAW*
Ga0129310_1023553	Ga0129310_10235532	F068855	VEAQGPQVRKILAPQGLQAEKERENANVQNAGWLHSFDADYHYRGSDLHYHVNVSAALSEGGAVW*
Ga0129310_1034778	Ga0129310_10347781	F026592	NRLRTASPQGIAALAAQGGVATLTERSDATFSVMQYPPADGE*
Ga0129310_1037274	Ga0129310_10372741	F090514	MNLRIHALKKASRQRSGVKIAAARFFSILYYPFYAKRSSFFQQNVQPRGNFFAKRPIFVYFADIPPRLTGAKWFVILLTIVPAGSRTRAG
Ga0129310_1039789	Ga0129310_10397892	F026489	VRKGGEGAEARGCSLLVAKENQKTTSDFDALEPRKRGCSPLLTPKGRATPEKTEDSRLFGVKIF*
Ga0129310_1044994	Ga0129310_10449943	F078004	LQGFVKPDLMVLFPVCFLFFCKSSTGRLSAVAGTAALDIHMICHALVIAVINTFYRLTVDADRMAWMRQGITERFSSLSLLRKALTAGAVTVTGMLAAHHDITLAAQTVLIIGTIFHNAF
Ga0129310_1051046	Ga0129310_10510462	F029444	MGVSEQLTGFELEELMSWTVSNLQRPFREDFSLKKSGIIAEKVSQIFGRRFVGFDS*
Ga0129310_1059873	Ga0129310_10598731	F026489	PKENQKSASDFDALEPRKRGYSPLLTPKKWATPEKTEDSRLFGVKIF*
Ga0129310_1081591	Ga0129310_10815912	F056309	MPSLSVVPLLLGDSDSLSVSYGMEPEQEALSIVSF
Ga0129310_1086905	Ga0129310_10869051	F070093	LLLAEFCPFRIDPPMEPEQERLSKLYSGPGIQRLLN*