3300010268: Switchgrass degrading microbial communities from high solid loading bioreactors in New Hampshire, USA - 8_30_10_142_A2 metaG

Overview

Basic Information

• IMG/M Taxon OID: 3300010268
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0121361 | Gp0153731 | Ga0134097
• Sample Name: Switchgrass degrading microbial communities from high solid loading bioreactors in New Hampshire, USA - 8_30_10_142_A2 metaG
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: Y
• Use Policy: Open

Dataset Contents

• Total Genome Size: 241672141
• Sequencing Scaffolds: 14
• Novel Protein Genes: 15
• Associated Families: 14

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	8
All Organisms → cellular organisms → Bacteria	2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Clostridiaceae → unclassified Clostridiaceae → Clostridiaceae bacterium	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	1
All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Switchgrass Degrading Microbial Communities From High Solid Loading Bioreactors In New Hampshire, Usa
• Type: Engineered
• Taxonomy: Engineered → Bioreactor → Unclassified → Unclassified → Unclassified → Switchgrass Degrading → Switchgrass Degrading Microbial Communities From High Solid Loading Bioreactors In New Hampshire, Usa

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): na → na → na

Location Information

• Location: USA: Dartmouth College, New Hampshire
• Coordinates
  • Lat. (^o): 43.726
  • Long. (^o): -72.1429
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000392	Metagenome / Metatranscriptome	1188	Y
F001938	Metagenome / Metatranscriptome	614	Y
F017083	Metagenome / Metatranscriptome	242	Y
F019116	Metagenome / Metatranscriptome	231	Y
F020859	Metagenome / Metatranscriptome	221	Y
F036417	Metagenome / Metatranscriptome	170	Y
F075996	Metagenome / Metatranscriptome	118	N
F077200	Metagenome / Metatranscriptome	117	N
F085349	Metagenome / Metatranscriptome	111	Y
F087072	Metagenome / Metatranscriptome	110	Y
F088753	Metagenome / Metatranscriptome	109	N
F098955	Metagenome / Metatranscriptome	103	Y
F100195	Metagenome / Metatranscriptome	102	Y
F105007	Metagenome	100	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0134097_1000366	Not Available	51347
Ga0134097_1000711	All Organisms → cellular organisms → Bacteria	30922
Ga0134097_1002407	Not Available	11516
Ga0134097_1002688	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Clostridiaceae → unclassified Clostridiaceae → Clostridiaceae bacterium	10609
Ga0134097_1007204	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	4451
Ga0134097_1010198	Not Available	3204
Ga0134097_1020006	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium	1695
Ga0134097_1048020	All Organisms → cellular organisms → Bacteria	796
Ga0134097_1053650	Not Available	727
Ga0134097_1054745	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia	715
Ga0134097_1055594	Not Available	707
Ga0134097_1058049	Not Available	683
Ga0134097_1061929	Not Available	650
Ga0134097_1076249	Not Available	553

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0134097_1000366	Ga0134097_100036613	F020859	MKKIIAKEVPPSNVDFRYYFDDEGLKSVSGKNCAVFVVPADRRRYSGFNMEEYEEIERTADSLIETFEEVSSKNKYYPTYKEAMLSHNIDYTSRKCHLLKKWAEYANPYDTSDIAEFLTITTGEEWNVRAFRGYSQGDYCEVVYCKAHHSEERITEIGKFWLGCGTEFCIDDCYGYYVPDTIRWPEGETLRKYLADCYGCKPEELEIYLYDGEHIVTDYRLMD*
Ga0134097_1000711	Ga0134097_100071129	F087072	MQSRVFTKRVFSLELSEEELGIIAGALYFANNENIKFFVDKYKYPCSGYSFDEVAELQEKLSEEINKLIEGKKE*
Ga0134097_1002407	Ga0134097_10024072	F001938	MIEKIYENKYMAICDNYGTGQECDSWADVMEFMNYEGWRKKLVDGEWKHYCPECQEGLKC
Ga0134097_1002688	Ga0134097_10026883	F075996	MLNSATGQAVGILLPFWSYIPTDRISPKGLLYPVSQVMKEGRLFRFVMLVGEPEEEVPLAGKDFFWQDTDRMYRPKYCAIDITADFKGRICTFTGLYARRDGLYVNGKRAGSFEDMRDIFVHYGLGEVWNLITGDIRPSCCVYKYGRLFVPETEVCLGLLSEKAQFPKGYDMKDLGRVERLLEDAGVFKIPEEISLAEVEEKLSKFSDLEKILDGLSEHDDETLLR*
Ga0134097_1007204	Ga0134097_10072048	F019116	MKKKTSIMLSARDKRLLELLAKKEARSQTKELEYLIRRRADELEIKIEEP*
Ga0134097_1010198	Ga0134097_10101984	F077200	MLMKFTVIEVKTQPNLKRIEEYARRYGMTPEEALEKKRIGDDYFPIRDQQIVSVGLLNLFSDKEDSVSVMAAVYAGEEKKVLEETAKKLEKIVKATGKPFFITGDGRKYALEILGGRAMAYMIEAKRADQEIIPELKDMIRLITSQKNGYLKPFDFRDSVDLQAMLGLGSDRTPLPDGLKYDNKSLPALAEETKSTVLDMAVNYAAYLEAQGEKIKPVVYKLNEKIFKTVEIFEFPEKKEQEQEIETDESDIDIN*
Ga0134097_1020006	Ga0134097_10200061	F036417	MQSRPFATFSFMVYPARTPLRELIPTVGVRLATDDGTIAFRARWKRRPVDLQRRILFWLREGKLLWFEDEWGRDLCFRPEAVWAAMVDGR*
Ga0134097_1032459	Ga0134097_10324591	F105007	KDVVPKWYEKVKREISNGRRGVFMHTVPLGSTEDFYRNLGTTGDPANLACCLTEINDIFREMKRPVCINLVILRDKDQLCTLGDGIPKTLLIKRFDKVSNKNAFRFLRADTLRRLGNFVCIDLDGIKAREFDIACAYRYEMEEKNCAVDRLAQVYAAVFLELESAGIKFLTCSNRAGYAYGYLDELSVFADEKDAERIEGALKTADCIAESLKGAVKEFSVRDLYLFSPAKDGEPSMNDPYFRKLVKSHISQFFPEKRKDAVEEEEWVDMIR*
Ga0134097_1048020	Ga0134097_10480202	F098955	MDPRSVRVRFESALELHMDPSAIPVFLAGPFPVLHSARVDDVLEEVDLDVALLISGMPTMIAETTFDLDDTWERVRNALASGDARLGVAGALHEEESELGVREVFPAAYVGLECANGERLVLAHIRSVEAGRDADAYAREVIAAILEGQTPGELGVFVDD*
Ga0134097_1053650	Ga0134097_10536501	F088753	YNNMTERGRILQELEMLKNTNDERLARRLSDWYGFVLSELTAGRVGDFIRSVPVDFVSLPFNGKRVENLINKCIKTLFEMAEDVRIPFETTAYMAESLRTGRKVRLRHAGQICSKKLGHALPVVLHKETITEMILREAKLLALSKVAVVVKLYCRIPGEFYPAVCCLSSDYDIAKRALRNITKDFVRDRMASFPRVDLKKDFFYLESGYGFDENGIIFINKGRVYYRTNDGTHELPDADLDS
Ga0134097_1054745	Ga0134097_10547451	F085349	IREQLREERRKNEELRALCKDLEDAAIELAEIVAANEKAIREVQDDG*
Ga0134097_1055594	Ga0134097_10555941	F088753	LSDWYGFVLSELTSGRVGDFIRSVPADFVSLLFNGKIVEKLINKCTRTLFEMAEDGRIPFETTAYMAESLRTGRKFRLRYAGQLCSKKLGPVLPIILHKETMTDMILREAKLLALSKVAVVVKLYCRIPGEFYPAVCCMSSDCNIAKKVLRNITKDFVKDRMSSFPKVDLKKDFFYLESGYGFGENGIIFINKGRAYYRTKDGTHELPDADLDSREELFMQISRAVAKVIEYEVA
Ga0134097_1058049	Ga0134097_10580491	F017083	MQYEIVFKVMGCSCYTCLPRTALAAAQSARKTAAPGTGTGAPQMDQRLLTNTWPKQCTIISIQANTSKN*
Ga0134097_1061929	Ga0134097_10619291	F000392	THATGSKIGSSRSCWNRCTEYFPVGMKTHIEYPDIFF*KYNSLYHIEMGTYVLIDLL*AGGSVAPAQPTSLR*N*EIFAQTCSTCLQGPYRKDSSGAHPCRAIDRA*EP*IPFPCSLKAITHATGSKIGSSRSRWNRGTEYYPVGMKTRIEYPDIFF*KYNSPYHIEMGTYVLIDLL*AGGSVAPAQPTSLR*N*GIFAQTCSTCLEGP*
Ga0134097_1076249	Ga0134097_10762491	F100195	NHFLFGRNEHAQSTTLGLKLMFTIPLDTSMHFYKAFDDT*