3300010262: Eastern black-and-white colobus group fecal microbial communities from Wisconsin, USA - Cm1105 metagenome

Overview

Basic Information

• IMG/M Taxon OID: 3300010262
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0120398 | Gp0147153 | Ga0129317
• Sample Name: Eastern black-and-white colobus group fecal microbial communities from Wisconsin, USA - Cm1105 metagenome
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 206085762
• Sequencing Scaffolds: 6
• Novel Protein Genes: 6
• Associated Families: 5

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Bacteroidaceae → Bacteroides → Bacteroides fragilis	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Rikenellaceae → Alistipes	1
Not Available	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Animal Gut Microbial Communities From Fecal Samples From Wisconsin, Usa
• Type: Host-Associated
• Taxonomy: Host-Associated → Mammals → Digestive System → Large Intestine → Fecal → Eastern Black-And-White Colobus Group Fecal → Animal Gut Microbial Communities From Fecal Samples From Wisconsin, Usa

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal distal gut

Location Information

• Location: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.07
  • Long. (^o): -89.4
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F032286	Metagenome / Metatranscriptome	180	Y
F051936	Metagenome	143	N
F061388	Metagenome	132	N
F076064	Metagenome	118	N
F076190	Metagenome	118	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0129317_1000243	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	65841
Ga0129317_1004873	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae	5140
Ga0129317_1009114	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	2840
Ga0129317_1023540	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Bacteroidaceae → Bacteroides → Bacteroides fragilis	1260
Ga0129317_1025659	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Rikenellaceae → Alistipes	1173
Ga0129317_1048658	Not Available	699

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0129317_1000243	Ga0129317_100024357	F076190	VRTAGGSITISVKDVFTAASRVSGHVWSLVRITVPNGLKSVKIGVKKPQNNFLYPYFQREPL*
Ga0129317_1004873	Ga0129317_10048731	F032286	MVKWVCQTVTSVRHRALVFNTRLFAGNAADDTLVTGGTFRFCRLMCLCVKRRNIMLNDKRRSLLNSALFRADNRTEQKTISLFSLALIFIFDFAALSECRSCPEDRSRRFVPVGTLTLSRSWRLLRWGTYPVRTVMQFSRFRSDCKTILAKNIALSRISKRS
Ga0129317_1009114	Ga0129317_10091145	F061388	MPEGGADMGGRGGSSHRQTAGGTAAIQTFLQNAYGANHANAVLAILQNAPAHIRALWEQYAAQFRATNMRRDEGAFYSPRDDSVHLHIPSVARGDAISTPYSVLFHEYGHMADYLIARGEGYSHISYSDLFQGVGAGGKPILRHGSAGGLLGRTAKDELEGHLSRMRRQNPNMTRDQAARALVSEARGKYSMLDRSDISDMFEGAGIGISHPLGAGHGLDYWSSRGNGKEIFAEILSAEAAHPGSLKAIKEYFPKTYQVYQDMMKARKKR*
Ga0129317_1023540	Ga0129317_10235401	F051936	QVLFFPLALRGKAFGFSVLQENAVMTPVISIFFVMLMIRYLSIHISIKK*
Ga0129317_1025659	Ga0129317_10256592	F076064	LKKTIPGRALDNLFYLQYDLPPEASFHATTEEAKRPDELYIRKLLPELTRLKLQPCHVVANDEAYYAAMKGISLFTPEAEKLMHRADYYSARRQIRLCAPDLKRRNEAKRPPKP
Ga0129317_1048658	Ga0129317_10486582	F051936	QEGTGQVLFFPLALRGKAFGFSVLQEHAVMTPVISIFFETLIIKYLSIQISIKK*