3300009978: Switchgrass associated microbial communities from Austin, Texas, USA, to study host-microbe interactions - RS_199 metaG

Overview

Basic Information

• IMG/M Taxon OID: 3300009978
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0114297 | Gp0127619 | Ga0105148
• Sample Name: Switchgrass associated microbial communities from Austin, Texas, USA, to study host-microbe interactions - RS_199 metaG
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 31905527
• Sequencing Scaffolds: 5
• Novel Protein Genes: 6
• Associated Families: 6

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	3
All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → PACMAD clade → Panicoideae → Panicodae → Paniceae → Panicinae → Panicum → Panicum sect. Hiantes → Panicum virgatum	2

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Switchgrass Associated Microbial Communities From Austin, Texas, Usa, To Study Host-Microbe Interactions
• Type: Host-Associated
• Taxonomy: Host-Associated → Plants → Unclassified → Unclassified → Unclassified → Switchgrass Associated → Switchgrass Associated Microbial Communities From Austin, Texas, Usa, To Study Host-Microbe Interactions

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Plant → Plant surface

Location Information

• Location: Austin, Texas
• Coordinates
  • Lat. (^o): 30.387
  • Long. (^o): -97.7301
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000412	Metagenome / Metatranscriptome	1169	Y
F019078	Metagenome / Metatranscriptome	231	Y
F032517	Metagenome / Metatranscriptome	179	Y
F079533	Metagenome / Metatranscriptome	115	N
F086518	Metagenome / Metatranscriptome	110	Y
F089797	Metagenome	108	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0105148_107273	Not Available	820
Ga0105148_109758	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → PACMAD clade → Panicoideae → Panicodae → Paniceae → Panicinae → Panicum → Panicum sect. Hiantes → Panicum virgatum	727
Ga0105148_112182	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → PACMAD clade → Panicoideae → Panicodae → Paniceae → Panicinae → Panicum → Panicum sect. Hiantes → Panicum virgatum	664
Ga0105148_119039	Not Available	549
Ga0105148_119161	Not Available	547

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0105148_107273	Ga0105148_1072731	F086518	VDGCLEMNKVRAIYKPRKPLVEGEAEPPQKRARPAGPMGLGRPAYTVLGSPRSHLSRVDSSHLLEFMSFTIAPLWMSLSSRYLRGKDRIGKSFLKSSFALLNPEVS*
Ga0105148_109758	Ga0105148_1097581	F032517	MNLSLSSSSFDKIINPYSEFLGLYGGGADDLVERRGGGGIPSVNLMEELLGSLIPPRSNMSLLGAGLSSSMLHGDQETECLREELGDASDVDERVLLLPAMNFMRPLMVTPCCTHSKTNTPGVSCRRENNISKSGAN*
Ga0105148_112182	Ga0105148_1121821	F019078	MSAEQKDLGDSAMGDGEKTCQCCQFYGVPCRQIRATEDEATTKRNQRLFSGTKRKMPHQGQLAEDSLFLDGPSVGDLQTMPKRKDPKCSRDTQVENQALHDYVDGLTITMNVIQPRGRKESKEQAAEIMQDVKISSQGGQPSS
Ga0105148_117409	Ga0105148_1174091	F089797	MDQNAPKHYETHQNMSLGPDGVDRVHLLQKILTQICGLNFCIN
Ga0105148_119039	Ga0105148_1190392	F079533	YPRGKSREEARVSTQLVLNKYNTNYEALRLADSTALAFKCWQNFIKAIYYELMNYH*
Ga0105148_119161	Ga0105148_1191611	F000412	THATGSKIGSSRSRWNKGTEYYPVGMKTHIEYSDIFF*KYNSPYHIEMGTYVLIDLL*AGGSVAPAQPTSLR*N*GIFDQTYSTCLEGPYRKDSSGAHTCRAIDRA*EPRIPSPCSLKAITHATGSKIRSSQSR*NRGTEYYPVGMKTHIEYPDIFFLKI*