3300009945: Combined Assembly of Gp0139326, Gp0139349, Gp0139350, Gp0139351

Overview

Basic Information

• IMG/M Taxon OID: 3300009945
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0118704 | Gp0139326 | Ga0117932
• Sample Name: Combined Assembly of Gp0139326, Gp0139349, Gp0139350, Gp0139351
• Sequencing Status: Permanent Draft
• Sequencing Center: University of Wisconsin, Madison
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 238746335
• Sequencing Scaffolds: 33
• Novel Protein Genes: 36
• Associated Families: 25

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria	12
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1
All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon CG_4_8_14_3_um_filter_42_8	1
Not Available	6
All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon	6
All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	1
All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon	1
All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria	1
All Organisms → cellular organisms → Archaea → TACK group	1
All Organisms → cellular organisms → Bacteria → Acidobacteria	1
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Sulfopaludibacter → unclassified Candidatus Sulfopaludibacter → Candidatus Sulfopaludibacter sp. SbA4	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Stable Isotope Probing Incubations Of Microbial Communities From Chocolate Pots Hot Springs, Yellowstone National Park, Wyoming, Usa
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Neutral → Hot Spring Water Column → Stable Isotope Probing Incubations Of Microbial Communities From Chocolate Pots Hot Springs, Yellowstone National Park, Wyoming, Usa

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Unclassified

Location Information

• Location: Chocolate Pots hot springs, Yellowstone National Park, Wyoming, USA
• Coordinates
  • Lat. (^o): 44.71538
  • Long. (^o): -110.73627
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001564	Metagenome / Metatranscriptome	670	Y
F003098	Metagenome / Metatranscriptome	507	Y
F006410	Metagenome	374	Y
F006925	Metagenome	362	Y
F008219	Metagenome	337	Y
F011639	Metagenome	288	Y
F014829	Metagenome / Metatranscriptome	259	Y
F020112	Metagenome	226	Y
F024925	Metagenome / Metatranscriptome	204	Y
F026930	Metagenome / Metatranscriptome	196	Y
F027240	Metagenome / Metatranscriptome	195	Y
F038503	Metagenome	165	Y
F039196	Metagenome / Metatranscriptome	164	Y
F046219	Metagenome	151	Y
F050736	Metagenome / Metatranscriptome	145	Y
F051554	Metagenome	144	Y
F058600	Metagenome	134	Y
F063102	Metagenome	130	Y
F064893	Metagenome / Metatranscriptome	128	Y
F069685	Metagenome	123	Y
F073072	Metagenome	120	Y
F084026	Metagenome / Metatranscriptome	112	Y
F089535	Metagenome	109	N
F094604	Metagenome / Metatranscriptome	106	Y
F102445	Metagenome	101	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0117932_1002710	All Organisms → cellular organisms → Bacteria	14493
Ga0117932_1007918	All Organisms → cellular organisms → Bacteria	2688
Ga0117932_1015985	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	967
Ga0117932_1019102	All Organisms → cellular organisms → Bacteria	2743
Ga0117932_1037544	All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon CG_4_8_14_3_um_filter_42_8	3006
Ga0117932_1038538	All Organisms → cellular organisms → Bacteria	630
Ga0117932_1040898	Not Available	1047
Ga0117932_1051735	All Organisms → cellular organisms → Bacteria	931
Ga0117932_1070029	All Organisms → cellular organisms → Bacteria	1057
Ga0117932_1072457	All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon	1439
Ga0117932_1072749	All Organisms → cellular organisms → Bacteria	651
Ga0117932_1078785	All Organisms → cellular organisms → Bacteria	3986
Ga0117932_1079965	All Organisms → cellular organisms → Bacteria	1712
Ga0117932_1081384	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	1165
Ga0117932_1092879	All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon	814
Ga0117932_1100441	All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota	2653
Ga0117932_1108565	All Organisms → cellular organisms → Bacteria	1043
Ga0117932_1111181	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria	2898
Ga0117932_1120643	All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon	1036
Ga0117932_1122922	All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon	748
Ga0117932_1125950	All Organisms → cellular organisms → Archaea → TACK group	994
Ga0117932_1153429	Not Available	598
Ga0117932_1154196	All Organisms → cellular organisms → Bacteria → Acidobacteria	1005
Ga0117932_1160102	All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon	680
Ga0117932_1161243	Not Available	583
Ga0117932_1168642	All Organisms → cellular organisms → Bacteria	528
Ga0117932_1175078	All Organisms → cellular organisms → Bacteria	559
Ga0117932_1176436	All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon	700
Ga0117932_1178407	Not Available	520
Ga0117932_1183853	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Sulfopaludibacter → unclassified Candidatus Sulfopaludibacter → Candidatus Sulfopaludibacter sp. SbA4	1340
Ga0117932_1202386	Not Available	999
Ga0117932_1216684	All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon	611
Ga0117932_1218008	Not Available	615

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0117932_1002710	Ga0117932_100271011	F064893	MSKIIRYEFMGSWFRFWLMCLTVIGIPFAVLYLIDGTLRMEHEIDDPERFVEAFRSGKLTKKS*
Ga0117932_1007918	Ga0117932_10079183	F039196	MSREQTFLLALGLLIAAAALVSAGGFVLLARDRRAGRATHHPEAAEER*
Ga0117932_1015985	Ga0117932_10159851	F027240	RAGIFAMTGLPGQPTGEVQGLKLVDVGPSILRLYGLEAPEGAVGRSFL*
Ga0117932_1019102	Ga0117932_10191023	F026930	MPLLSDPMFGQTMITLMAAIVLVLQITLVAQKSLVSSIYVFALQSFLLAAIAGTIAWF
Ga0117932_1037544	Ga0117932_10375443	F011639	MGEESVRVDKELVRPRLSYDERWLIYRLVDGQYWLLRRHPHPFWDFEEVAKLRRKWLRNLNKCRKPKYQISLRQRLY*
Ga0117932_1038538	Ga0117932_10385381	F001564	CPDAPDDGGRCDHCPLDRLDAAQASEPGQLLRRALDLRAALKLGVRLSLDEIAADEFHAMLIVEEEQPRFDDERAKCHG*
Ga0117932_1040898	Ga0117932_10408982	F058600	MDRIDKVLLVLPVLPAADLLSTFFSLSLGGQEVGILARPILEYYGPVGLVMLATFASITFLAFMEVVIYIKKLFARGEWKSWWTWYILAVPIYWFFVLEGFYVSTVVMNFLAPFSPLLTQTIILRAIIVGTYFLFVSVLTMPRMKQLPCF*
Ga0117932_1051735	Ga0117932_10517351	F001564	LCDPGLCPDAPEGSRCEHCPLDRLDVAQASEPGQLLRRALDLRAALKLGVKLSLDEIAMDEFQAMLIIEEEQ
Ga0117932_1070029	Ga0117932_10700292	F046219	LRRALDLRAALKMGVRICLDEIRADEFAALVKLEGEQAEFEREKAAMPPH*
Ga0117932_1072457	Ga0117932_10724571	F024925	MQTLVDEMSSCNSVEEAFALEKEQLDELFPEDYPWTIREVGDRLIDMYRELGIEVEIEYFEGGFTLKYKSCPYYKLVKNQQKTWLCTLRKKTLDYVISRVSHGKKGKIKIIKSLLQNEHPCEYAIFLTAFLEKEERQLEK*
Ga0117932_1072749	Ga0117932_10727491	F046219	LRAALKLGVRIGLDEIRADEYRAMLTVEEERERLDRELFEDRRP*
Ga0117932_1078785	Ga0117932_10787853	F046219	LLRRALDLRAALKLGVRLDLDEIRADEFAAILLIAEEVDVLEKERLSGQMGPR*
Ga0117932_1079965	Ga0117932_10799651	F006410	KLKVSPEKQKERKERAKERNLILKEIKSQGPSTLDDLVKTTGIEKEKLFKHIIAMRQFGKIAIAGERDNQLVYGLPEGEETSKQ*
Ga0117932_1081384	Ga0117932_10813842	F014829	MQPVRVRERIAGTLHQYVGLRAGAGWAQDSLRGTASLSGRRKFNKFFYDGELVLRYPVRAGVGSVIPYVLGGAGAVTLHRLDTSTSEDFTKFAGNFGAGLEYRYQRIGVRAEGRDLVYKFDRFGFDKTQHGIVWDAGVTVSF*
Ga0117932_1092879	Ga0117932_10928791	F084026	AKPVAVDVDRTGQHRLVVYAVPRDPALVGSGELRDRLRLEFERAIKERLNPLLAHVHDVVLVAELPQVGPGKTKTMSELRKDYLARIGQA*
Ga0117932_1100441	Ga0117932_11004413	F102445	MDRRQLLFTTLMGSLAFAMRNVGLYVLIHPPFMFEPRWIFSLLAACWVVPEGGLIAGALAALKLEKLVQADLAAIPAHFFVGLFAKLLIQRKTNSLYACFLRTLLGVLLYGLTTLLFTPAMATITLVPVLTFISVTSSTCLCSRTGC*
Ga0117932_1108565	Ga0117932_11085652	F001564	PSLRFLIHWALRRDELCDPGLCPDAPDDGGRCGHCPLDKLDAAQSSETGLLIRRAIDLGAALKLGVCISLDEIRGDEFLAMLTIEAEKDRIDAADATAIRHTAGLST*
Ga0117932_1111181	Ga0117932_11111814	F001564	LIHWALRRDELCDPGLCPDAPDDGGRCGHCPLDRLDAAQSSEAGLLLRRALDLRAALKLGFRISLDEIRADEFRALMVLEEEQERFDRERLNASRS*
Ga0117932_1120643	Ga0117932_11206432	F073072	MQQRSEPKMTKTKKIVFIYAQLVEEPEAYGGKTNADIEKEILKDIGLIPYVARIEKVTVLDCPP*
Ga0117932_1122922	Ga0117932_11229221	F008219	MPKYLVEIILVVKAKNPQEARKIADYIIDLPIPDKNIENAIETMRYEEIVQIKNPRA*
Ga0117932_1124535	Ga0117932_11245351	F063102	FGTDSVAEQIEFGFAGDVSTAPPMAHRLAGTGIGTPECFVESREGEACE*
Ga0117932_1125950	Ga0117932_11259502	F050736	MPAPVISHIILMGALIVVIFTVQVFYFYVVDNVWAEMVRRELKELTDYVADTIANLYFLANSTSTNPLLEKTLRLPLDIGGSSFSIEITKDQNNYTQTVKATVQGKSWLYVSSWLPRGLLVDTGKTKTIESSGKTVVAGCQRVSSRIYVWIAYKG*
Ga0117932_1153429	Ga0117932_11534291	F038503	KTKMKKSVKVWLVGWALFWLSFIVTFFVDYLGVVEVSNLGFVEAIWISWILWTVGLGLTLAILTRFIVKE*
Ga0117932_1154196	Ga0117932_11541962	F064893	MSRIIRYEFMGSWFRFWLMCLTVIGIPFAVLYLIDGTLRIEHEIDDPERFVEEFRSGRLTKKR*
Ga0117932_1160102	Ga0117932_11601022	F069685	KARITELEAENEKLKATVTEATKTLTAYVERERESAIKSILEKTTLAKDELEKLDLSQLRLVQKGIDSVKGSVKNVRSAGASTTEDNKLTVGCLYHKKEK*
Ga0117932_1161243	Ga0117932_11612431	F006925	LAVQVEVLEGFGRDIALRKKWMQMWETLGERILKMPKWMQDIVLEDIYNAVRNRVAVMEMVQK
Ga0117932_1162400	Ga0117932_11624001	F051554	MQLRYYVPFKAQEDVKAEYALKEKLLNIEGVAIDTSVNANKWQIPSEDLGFLAESLIGVQLRVDHAESALMVVGKVAEAKREGDKVLFRAEVGEEKLIEKILSGYVTHVSVQVDSEEVECSKCKRPTRREGMLVHLCPGAWEIVHKPTARELSIVASPAYKTTEFTPVGFYAAMNNGQWDAAVKTVTRSESLLDKSDNVGSKPVERLQEPENKNLNKQNEVKPMSVKADEKASPQQAQAVVNV
Ga0117932_1166009	Ga0117932_11660092	F051554	VSAEYALKEKLVNIEGVAVDTSVNANKWQIPAEDLDFLVNSLVGAQLRVDHAESALMVIGKVAEAKRDGDRVLFRAEVGEEKLIEKVLRGYVTHVSVQVDSDDVECSRCKRPTRKEGMLVHLCPGAWEIVHKPTVRELSIVASPAYKTTEFQPVGFFAAMNISQWDAIVKSVTDSQSLPQKSDDVGSKPERLQEPETKIGQDKISEVKPQMSVKADEKASPHQAQGVVNVAPGETSTATA
Ga0117932_1168642	Ga0117932_11686422	F001564	LTPGEWPARPSLRFLIHGALRRDELCDPGLCPDAPDDGGRCDHCPLDKLDAAQSSEAGLLLRRALDLRAALKLGVRIGLDEIRAEEFLALVVLEEEQERLDRERLNASRP*
Ga0117932_1175078	Ga0117932_11750781	F001564	RLRGVRRPKLTCGEWPEDPSLRFLVHWALRREELCDPGLCPDAPDDGGRCDHCPLDKLDAAQSSEAGLLLRRSLDLRAVLKMGVPIGLDDIRADEMRALIMLEEEQERLDREKLNGSST*
Ga0117932_1176436	Ga0117932_11764362	F003098	MKLSSLQREGTMAKSIEFVFQFPPIQGVFDTGCGVVYMFGTLHENEIEDIIVHETLHYVLQKVAGKRTSLKLDRIYDKIPSD*
Ga0117932_1178407	Ga0117932_11784072	F069685	MSEEKPTEDVEALKARIVELEAENEKLKTTMAEATKTLTAYVEREREAAIKAIMEKTTISKDDLEKLDLVQLRLVQKGIDNVKGTVKNVRSAGAGDSEENRLTVGCLYHKKEQ*
Ga0117932_1183853	Ga0117932_11838532	F001564	LCDPGLCPDAPEGGRCDHCPLDRLDAAQNSEVGQLLRRALDLRAALKLGVKLSLDEIAADEFQAMLIIEEEQTRFDEERAKRHGSEPAGKWRLSS*
Ga0117932_1202386	Ga0117932_12023861	F020112	MVSKAFKKCVELVEEILREGYRLHIPSTHVEKQIKVHVGADKRTIQTYMKMLTEDLGFLETSAKNPLGIIIYRIDIPTIEQYVSEHMKEKLRQLTLLDVRLREEEVKPEKV*
Ga0117932_1216684	Ga0117932_12166842	F089535	VVGKGKSVPRDGPEGEWSKVYYQLEAVPAESEDVQAVRMSLEGILDQWLSVEAKPEVEVPKLDLAELDQLPWTAYKTKEPAKEGEAGWIFANTEGAEELVKAMQKCEGKLELGAYVYRFSGKEKQFIARKPVKK*
Ga0117932_1218008	Ga0117932_12180081	F094604	LTTERITELLNVIESRQSHYAELRAIAGGALPSIWSDWQHYEPAGSIASDIVAVLEASLIGRVDLRVDPDDATADQLITLLYQRHLHPLVREAVRDYIICGWGGVTMTPWGQARLKPEHSLAGKDWYLRRYELDVRAARQRFGKRRVFDNKSGDVLLVE