3300009717: Marine microbial and viral communities from Louisana Shelf, Gulf of Mexico - GoM_2015_C6C_236_2m (Metagenome Metatranscriptome)

Overview

Basic Information

• IMG/M Taxon OID: 3300009717
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0110190 | Gp0141781 | Ga0123375
• Sample Name: Marine microbial and viral communities from Louisana Shelf, Gulf of Mexico - GoM_2015_C6C_236_2m (Metagenome Metatranscriptome)
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 3566028
• Sequencing Scaffolds: 6
• Novel Protein Genes: 11
• Associated Families: 10

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae	1
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Deuterostomia → Chordata → Tunicata → Appendicularia → Copelata → Oikopleuridae → Oikopleura → Oikopleura dioica	1
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Mandibulata → Pancrustacea → Crustacea → Multicrustacea → Hexanauplia → Copepoda → Neocopepoda	1
All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Mediophyceae → Biddulphiophycidae → Eupodiscales → Odontellaceae → Odontella → Odontella aurita	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium TMED42	1
Not Available	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Microbial And Viral Regulation Of Community Carbon Cycling Across Diverse Low-Oxygen Zones
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Microbial And Viral Regulation Of Community Carbon Cycling Across Diverse Low-Oxygen Zones

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): marine biome → marine water body → sea water
• Earth Microbiome Project Ontology (EMPO): Free-living → Saline → Water (saline)

Location Information

• Location: Louisana Shelf, Hypoxic Zone, Gulf of Mexico
• Coordinates
  • Lat. (^o): 28.8679
  • Long. (^o): -90.4764
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000048	Metagenome / Metatranscriptome	3365	Y
F000075	Metagenome / Metatranscriptome	2622	Y
F016973	Metagenome / Metatranscriptome	243	Y
F018725	Metagenome / Metatranscriptome	233	N
F027191	Metagenome / Metatranscriptome	195	Y
F052608	Metagenome / Metatranscriptome	142	Y
F060338	Metagenome / Metatranscriptome	133	Y
F078189	Metatranscriptome	116	N
F083435	Metagenome / Metatranscriptome	113	Y
F090440	Metagenome / Metatranscriptome	108	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0123375_10034	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae	804
Ga0123375_11006	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Deuterostomia → Chordata → Tunicata → Appendicularia → Copelata → Oikopleuridae → Oikopleura → Oikopleura dioica	627
Ga0123375_12238	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Mandibulata → Pancrustacea → Crustacea → Multicrustacea → Hexanauplia → Copepoda → Neocopepoda	507
Ga0123375_12332	All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Mediophyceae → Biddulphiophycidae → Eupodiscales → Odontellaceae → Odontella → Odontella aurita	551
Ga0123375_12747	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium TMED42	659
Ga0123375_14464	Not Available	508

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0123375_10034	Ga0123375_100341	F027191	IKERKKNEREKPLLQSINLVKVVRFLISGKKKKMRIEVNKIMNPAFLLGTAFNIAYWHRKYHSGTICKGVSNAQASNALSGCEREEIPK*
Ga0123375_10471	Ga0123375_104711	F000075	LTSLKMKFAACLIAVAAATKYDHMTEDELLVSLSNTLSSALESEARGDGDAAVAKTAAIKNIQKSLTARILKRLDDGQPLVEVARKMKAIEGMQPQINDMERRLGIMQSVEPVLENAIKTLQKVVDVRGMGKK*
Ga0123375_10646	Ga0123375_106461	F000075	VALTAFVATAAANQYDFMGEDELLSQLSSTLVSAQRSEAMGDGDAAVAKTAAIKNIQKALTARILKRLDDGQPLVEVARKMKAIEGMQPQINDMERRLGIMQSVEPVLENAIKTLQKVVDVRGMGKK*
Ga0123375_11006	Ga0123375_110061	F078189	SRKSALHGAWSFGGESRSVLLLSGNDSSWKRESDLRVQKLSDVWSLGALLLASGVGDWKSFDSEDLDGSRSSSMASTHVSVALSDGAAGHRVSVFTVHVVSSRSGVVSDPDAEVLDKTGCLFGDLLHRDDFSGGLVDLLVVRHKVPESRFGGDRVRREKSNSVDRWVRQSVRRQLSASNDELAKIALCLHF*
Ga0123375_11371	Ga0123375_113714	F083435	RFGTIRSAYSKLPRLWYGWLGRGTLDDLTTEDYEQYLKNKDNKDSIQKAKHRDSKIRWAYRQERLKNRFIQLLAKFGIKINTVSKNDEGDDLYEEFKKFSKK*
Ga0123375_12238	Ga0123375_122381	F052608	TIENMFAEIQHNYDVMTMTLPEDKKDFVKKEVKAVSEKLEVVGRFKEKVDKIDEFVTNLDNFDKTLKMVDSWMTEADKQLNDIKNNSDTMTPEDRVSCTMELQEDVSQKVEVIKKAIGTESDLLPQGDEVPKDAKDYKDELKRIDDYVSDLQKRVMTECEHFSEDVKY
Ga0123375_12332	Ga0123375_123321	F060338	QFQIILLFSIKLFCFDFSITNLVLVNLLVLAIFVAIVFLFSSNVNYLKETSFFFIPNT*
Ga0123375_12747	Ga0123375_127471	F018725	AVLGGGFFAYQSVNAADISGNAGVSFTDTRTFRGVKQADDTLGASVALETALASKVSLGVSLDSLSALEAGQTNELRTGVSLGYQLSHLIGLSVGYTNYDYQSATSFDEIGLGASFETLLNPSVLYAIDSDNDSDVAELSVGHSIALSEQFGLDLDGSWGNVDAAADYTYYEIGATVTTEVAGADAFAGVSLVDNDNAGSDSETVFSVGFSLNF*
Ga0123375_13283	Ga0123375_132831	F016973	EEKSNNKEMKLFAALAAVASANWNGVSSDNTCGMQISGDSIVNSTCTVSGSSISYVFAGNGAFITGANTFTGYDGTSGDVDVVVFFDQDCSSGECDNSTCWDAAVNCVDNGAATAGVFFMETVNDHRGAKGGNVNLQISGVSDGDTLSIDLAGFACQNISAPFGVVNADEDAWGNFYSDDGVFSVTASGNFGDLFQISITQQPGQTSALNLWESSVSN*
Ga0123375_14464	Ga0123375_144641	F090440	EISGLKLATDLRLKRIYHCWITDVGEGYDLRIIIHKSIGG*
Ga0123375_14689	Ga0123375_146891	F000048	ANVNDFDQNCLKHLKILENAETAANKMTTHKEADVEVAELKARYQKVKSVSDEWMKKADTLVKEWKLLDNTVNELNSWVAKDRGAEGEQNFSLEKMESTLGELKNIFKQKEKLVENL*