3300009431: Combined Assembly of Gp0137033, Gp0137034

Overview

Basic Information

• IMG/M Taxon OID: 3300009431
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0118094 | Gp0137033 | Ga0120401
• Sample Name: Combined Assembly of Gp0137033, Gp0137034
• Sequencing Status: Permanent Draft
• Sequencing Center: Georgia Genomics Facility
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 1405693252
• Sequencing Scaffolds: 33
• Novel Protein Genes: 35
• Associated Families: 28

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	15
All Organisms → cellular organisms → Bacteria	8
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → Desulfobacteraceae	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rickettsiales → unclassified Rickettsiales → Rickettsiales bacterium	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	1
All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae → unclassified Gemmatimonadaceae → Gemmatimonadaceae bacterium	1
All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → unclassified Planctomycetota → Planctomycetota bacterium	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → unclassified Rhodospirillales → Rhodospirillales bacterium	1
All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → unclassified Planctomycetota → Planctomycetes bacterium Pan216	1
All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Candidatus Methanofastidiosa → Candidatus Methanofastidiosum → Candidatus Methanofastidiosum methylthiophilus	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Marine Water Column Microbial Communities Of The Permanently Stratified Cariaco Basin, Venezuela
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Marine → Coastal → Unclassified → Marine → Marine Water Column Microbial Communities Of The Permanently Stratified Cariaco Basin, Venezuela

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Free-living → Saline → Water (saline)

Location Information

• Location: Cariaco Basin, Venezuela
• Coordinates
  • Lat. (^o): 10.5
  • Long. (^o): -64.66
  • Alt. (m): N/A
  • Depth (m): 900

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003507	Metagenome / Metatranscriptome	482	Y
F007341	Metagenome / Metatranscriptome	353	Y
F011939	Metagenome / Metatranscriptome	285	Y
F013484	Metagenome / Metatranscriptome	271	Y
F018542	Metagenome / Metatranscriptome	234	Y
F021240	Metagenome	219	Y
F029285	Metagenome / Metatranscriptome	189	Y
F029588	Metagenome / Metatranscriptome	188	Y
F034286	Metagenome / Metatranscriptome	175	Y
F039118	Metagenome	164	Y
F044420	Metagenome	154	Y
F048391	Metagenome / Metatranscriptome	148	Y
F049629	Metagenome / Metatranscriptome	146	N
F049640	Metagenome / Metatranscriptome	146	Y
F059749	Metagenome / Metatranscriptome	133	Y
F071260	Metagenome / Metatranscriptome	122	Y
F076639	Metagenome	118	Y
F080045	Metagenome / Metatranscriptome	115	N
F083361	Metagenome / Metatranscriptome	113	Y
F083437	Metagenome	113	Y
F083739	Metagenome	112	Y
F086602	Metagenome / Metatranscriptome	110	Y
F092307	Metagenome	107	Y
F093421	Metagenome	106	Y
F099327	Metagenome	103	Y
F099975	Metagenome / Metatranscriptome	103	Y
F101182	Metagenome	102	Y
F105436	Metagenome	100	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0120401_1003485	Not Available	36570
Ga0120401_1007285	All Organisms → cellular organisms → Bacteria	22931
Ga0120401_1010513	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → Desulfobacteraceae	17753
Ga0120401_1023989	All Organisms → cellular organisms → Bacteria	9233
Ga0120401_1028055	All Organisms → cellular organisms → Bacteria	8061
Ga0120401_1029339	All Organisms → cellular organisms → Bacteria	7751
Ga0120401_1031684	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rickettsiales → unclassified Rickettsiales → Rickettsiales bacterium	7246
Ga0120401_1036518	Not Available	6405
Ga0120401_1058669	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	4241
Ga0120401_1093186	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	2830
Ga0120401_1099520	Not Available	2674
Ga0120401_1115314	All Organisms → cellular organisms → Bacteria	2356
Ga0120401_1115780	Not Available	2348
Ga0120401_1116250	Not Available	2339
Ga0120401_1128107	All Organisms → cellular organisms → Bacteria	2152
Ga0120401_1172084	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae → unclassified Gemmatimonadaceae → Gemmatimonadaceae bacterium	1675
Ga0120401_1213128	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → unclassified Planctomycetota → Planctomycetota bacterium	1393
Ga0120401_1233965	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → unclassified Rhodospirillales → Rhodospirillales bacterium	1288
Ga0120401_1286302	Not Available	1095
Ga0120401_1293413	Not Available	1074
Ga0120401_1297505	Not Available	1062
Ga0120401_1312369	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → unclassified Planctomycetota → Planctomycetes bacterium Pan216	1022
Ga0120401_1315669	All Organisms → cellular organisms → Bacteria	1014
Ga0120401_1343359	Not Available	949
Ga0120401_1368178	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Candidatus Methanofastidiosa → Candidatus Methanofastidiosum → Candidatus Methanofastidiosum methylthiophilus	896
Ga0120401_1371022	Not Available	890
Ga0120401_1392559	Not Available	848
Ga0120401_1406819	All Organisms → cellular organisms → Bacteria	821
Ga0120401_1411559	Not Available	812
Ga0120401_1418441	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	800
Ga0120401_1422954	Not Available	792
Ga0120401_1459408	Not Available	725
Ga0120401_1496135	Not Available	647

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0120401_1003485	Ga0120401_10034851	F044420	WGATVCKLVPGFFALGLLGIGVALTYASLRQAGVV*
Ga0120401_1007285	Ga0120401_100728516	F092307	MVKDGEAFVQWLDGAKLPQTKRAPHQLAVLRAAFAFLQQAGTDYASRRLVAHFLLNCQLDLKLAQVARLVGVTRPTASRQNKLSSREVVREIQHQLSGRPYGKLLPRYAGPIAHFLATHPDASRDDVLDFIETTWNLRVGLTALHSFLKKYGLDRQSLEEATPSEPPHPATDEQTLVEVLQEPPTSGLPVPQVPDDFFWPDPIRRRLSVASSSAPLVGHRPAMLLR*
Ga0120401_1010513	Ga0120401_10105131	F099975	FVKIKEIKGLRGDVACHVAQAIPKIDAEIGEIDHLWMETD*
Ga0120401_1023989	Ga0120401_10239891	F099975	YKFKEIKELRGGVLKYAAQAIPRIDAEIVKKGRLWMETS*
Ga0120401_1028055	Ga0120401_102805511	F099327	MAEEGYIQGTSGEEISLLVDGIKIMALQNLSWKASQAKSVIRGAGYSKPHAMGRGPKEYEVDFEVKELNKAVIEEAVNSPKSSESQIKTFTVGEQEFSDLLDLRNATVLIMYPAKNNAQRIIRFLGFEFTDVEGGFAVDDESVGRKLSGIAMDAEGLV*
Ga0120401_1029339	Ga0120401_10293392	F059749	MISVKDILQLKSNSTFVVELLADGKPKKFRLCVEPIEVDGKTIERIVCEEGLTQLLHSRPQAAHSFFRMVGNLYHGKKIEFPVDLA*
Ga0120401_1031684	Ga0120401_103168410	F018542	MYLILSQPSQEYAKAVSHELWMLARPRGISDNETSQFYCGVHVHSDGRVAIGPIDQPQQVHANADELSFAQLIGNAVTEAEEQAIIDAIVEAKGGTIQLLDIIAASPSLSPNLRTYEQ
Ga0120401_1036518	Ga0120401_10365189	F029588	MANDKYSFWIGLGKTLKNSAYLLVPFGIAILASVPPRYAWIAGPVIYMGKNYLANK*
Ga0120401_1058669	Ga0120401_10586692	F048391	MNDNKSVEPINSIQYLEELLDEGYIIKGPRRDPSRDLVSFKAFLKKGKEFAPDVWLSNMGYEFVEPSTFTKGHKIAFKMIDDIPDERFSSNYTLIKGKTEIPLYLKVEMPKE*
Ga0120401_1093186	Ga0120401_10931862	F013484	ELANVAPQEEIARAAGYAERTLRFYKQRLQKEGLDGLFDHPIPGRPAITTQPAVEGAVVMAILEAVISQHILPDDEVLAEVVNAQLLEQKDPLAGQVTASIVETIRLGWGIQRLPVQQQLQEAQASPPSEQERVCLGRTQAGGAFSLAILLVEAGWLKMAQLLPMVPRYAVTAVQWLLTAIFAVIYDVRRAFHLDDVRDVGFALITGRPRPLSHGTFQHMLHHIPAADAQRFYEASTQHEVETLEEGPRRISVDGHNLPRYTKIVAVTKGKIGNTGRVLKAEELVLAFDLDARRWLALRVYQGTKKLSLALPEIVAELRRHRGPDKGPLRFFFDKGGYKGLIFRDLAAMEDVHFYCPAVRYPDNVAQWEKLTAEDFDPEPFVFDKHADLPPEKRPVYRLADTEMTINVWEDGLVVDTVTLRAVVIHDPQGQTPAERWPVVYLTDDHQIDARALANEFGDHWGQEFAHRIGKHDLCLDIVPPGYTLTSKRDEQGQLQRKVKYDTTAFFLSAWLRCLVFNLMSLFAQAMGGEYTKMWAGTLLRKFIRRPATLYLIGKELHVVFDPFPDQEALCPLIDSLNAKRVALPWLNGLVVQFSIAQNEPLYPLAEPEKRQRLFGDG*
Ga0120401_1099520	Ga0120401_10995204	F039118	MEFENENPIEEKKTATTKFAEWLMARQEKKEAKETSLEGLMKFNIFLSTITLVSVAGATALDYALIAWLWI*
Ga0120401_1115314	Ga0120401_11153142	F093421	MMLDDGAIKEADALAEALRQQNDDEAHDRSMIVERLRWTPEERLAANADFVRFYRNVRPGGPLIRE*
Ga0120401_1115780	Ga0120401_11157801	F013484	MDTRFDFPDGTLSTEHQALVETLNQFVATLPADDEQQQVAIRLGMELLELADVATQEEIARAAGYSERTLRLYKQRLQEEGLGGLFDQPIPGRPAVTTQPAVEGAVVQAILEAVIGQHTLPDDATLAAAVNRHLTDQQDPLAGQVTASMVETIRLGWGIQRLPVRQQLQAAQAPSPAAQEKVRLGRTLVGGAFVLAILLVEAGWLKLAQLLPMAPRYAVTGVQWLLTAIFAVIYDVRRAFHLDDVRDVGFALITGRPRPLSHGTFQHLLHHFPAEAGQRFYDTSARQEVETLEAGVRRVSVDGHNLPRYTTIVALTKGKIGSTGRILKAEELVLAFDLDAQRWLALRVYQGTNKLSLALPEIVVELCQHRGEGQGLWRIFFDKGGYKGQLFQSLAEMEDVHFYCPAVRYPDNVAQWEQLTTEDFDLEPFVFAKHADRQPQEQPVYRLADTEMTVNVWDKGQVVDTVTLRAVVIHDPQGQTPAERWPVVFLTDDREIDARALANEFGDHWGQESAHRVGKHDLCLDILPPGYTLTSQRDEQGQLQRQVEYDPTTLFLSAWLRCLVFNLMSRFAQALGGEYAKMWAGTLLRKFIRRPATLYLVGKELHVVFDPFPDQEALHPLLDRLNAKRVALPWLNGLVVQFSIAQDESLHPLTEPEKRQRLFGDG*
Ga0120401_1116250	Ga0120401_11162502	F013484	LHPDNEDGEAAVRLAMELLELADVAPQKEIVQAVGYAQSRSLRTYQQRLQEQGLGGLFDQPIPGRPAVTSQPTVERAVVQAVLAAVITEHALPDDDELAQAANRQLAETLWAGQVTASMVETIRLRLGIQRPTLAQQLQAALSTPSTAEDQMRLGRTRAGGAFILAVLLIETGWLKLAGLLPIVPGYTVTAVQWLLTAIFAVIYGVQRAFHLDDVRDIGFALITGRARPLTHGTFQHLLHHIPTQAAKAFYEATARRIVRGLGEGIRRISLDGHNLPRYTQIVDLVKGKIGNLGRVLKAEELVLAFDLDAREWLALRVYQGTNKLSTALLEMVAELRQHRAGLKGLLRLFFDKGGYKGQNFQTLVDRPDVHFYCPAVRYASNVEQWEQLSKDDFQAESFVFAKHSELPSEEQPAYRLADTEMTLNVRDEKNQVVDTVTLRAVVIQDPDGQTTAKRWPVTFLTDDREIDARELANEFGDHWGQEFGHRIGRHDLCLDILPPGYKLTSRRAENEDLQREVTYDPTAFFLSAWLRCLVFNLMTRFAQALGGACATMWAGTLLRKFIRRPATLYLVGKELHVVFDPFPDQDELRPFLDELNAKRVGLPWLNDLIVQFSIAKAEPIHPLTEPEKRNRLFGDD*
Ga0120401_1128107	Ga0120401_11281073	F021240	MLDFNNSKSRIIIVDQEDRALLRSTPSAWSMPEDGQEHVFAHMLLPSRSSFGFKAKNLLSWCEAPIRVKQVKHISPVRHMSGNTMLYGKFQ*
Ga0120401_1172084	Ga0120401_11720843	F021240	MLDFDNSQSRIELIDQEDRALQRCNPSAWSMPEDGQEHVLAHMLLPSRSSFGYKAINLLSWCFAPTKALRSSITAPVRHMSAY*
Ga0120401_1200216	Ga0120401_12002166	F071260	MFFEDAQFAWELYKISPELTCTCDEVHTCQQCYEKAKKERDEKK*
Ga0120401_1213128	Ga0120401_12131282	F083437	MSFSDICNDVATRLGRLAGKGHNVLSSAREKVKDSANLPEKIQNAMFEKLSRTLYKQAQFMMGKISERMEVIDEVARPFYEKVNALNERGPVSESQLWSAMNSIEAAQNLSEEEKTLLINIFGQFVGAQKSKVVDAVVVEGGSSTKRKSKSQLNGAANG*
Ga0120401_1233965	Ga0120401_12339652	F003507	HFVLPETLATFRAHIDETLIDELLAVQAAAAVEKGLVSPKHLVVDTFPSEQGSQRVTDAGTLYKAKKKSSR*
Ga0120401_1286302	Ga0120401_12863023	F105436	MKLVFVNIMHDLYKLDSTATISQPPVPLAVLNAVTPAAIETALVDEQTDD
Ga0120401_1293413	Ga0120401_12934132	F018542	MYLILSQPSQEYANAVSHELWMLARPRGLSDNETSQFYCGVHVHSDGRVAIGPIDQPQQVHANADELSFAELIGNAVTEAEEQAIIDAIVEAKGGTIQLLDIIAASPSLSPNLRTYEQ
Ga0120401_1297505	Ga0120401_12975052	F101182	LINGRRKYMETYNEDLVYEKKLDRISGQIEELILDAMIAALIKIKDRNLFYSNVESESQDDPYPF*
Ga0120401_1312369	Ga0120401_13123691	F049640	MTERMGMVRQIRLELLPHERAALLKGNFTIDDVRAQLEACASSEDIETITMTAVDVHWLASDLTHAIVKQGCRDQDVIDLSERLDYVDESGDGSLDSWYY*
Ga0120401_1315669	Ga0120401_13156691	F034286	GRRSLWVMNADGSDVHEVASPSGDKLDIMWGDIAWSSKDWILFVVAENDADTCFKTRLDVIRPDGTQRTKVTDGGPNCTPAGFQQSGDADPGFSADGANIYTSRGFPRIPAGMPGGTVRRLYAVSTDPWEPGKPEFDLSLAGTPDCVEGVPQGSPDGASILLFQFCGGGKPGICLTDTAGSYRTWITDGFGPDWNPVWKP*
Ga0120401_1343359	Ga0120401_13433591	F080045	FMSCGVTIPTKPKDLQMAQKLPKNPNIARKVREGIAGGVSVQQIFKSVLHMKNAPQSYTTFYKLYREDMDEVKFSIDAEVGKTVIQQAREGDFKSQELYLRSRAGWSPSSHVQEQEVGTEDEENEGAVNALMAALGKDTDTEE*
Ga0120401_1368178	Ga0120401_13681782	F029285	MKDKANYSEYECPYSHIEKECGHVLNGPEGYDDIYSVWCSCGFRGPVFCLEPKELRLIKLTNKEL*
Ga0120401_1371022	Ga0120401_13710224	F018542	EEYAKAVSHELWMLARPRGISDNETSQFYCGVHVHADGRVAIGPIDQPQQVHANADELSFAELIGNAVTDAEEQAIIDAIIEAKGGTIQLIDIIAASPSLSPNLRTYEQLDADGWFPTEEI*
Ga0120401_1392559	Ga0120401_13925591	F086602	TKKLSKGLVEIVRELLKHRGALKGLLRLFFDKGGYGGQIFLALSKEPRVRFYVPAVRYPSNVTQWEQLQDSDFDAHPFTFDKHAELPVEQRPTYRLADTKMTLNVWEKNKVVDTVTLRAVVLHNRQGEKPAERWPVVLLTDDDEINARALLNEYGDHWGQETAHRIGKHDLYLDVLPPGYTLKTQRDDQGQLQREIEFDQTAFFLSAWLHCLVFNLMSRFAQALGGEYTKMWAGTLLRKFIRRPATLYLVGKELHVVFDPFPGQDKLQPLLDKLNARRTALP
Ga0120401_1406819	Ga0120401_14068191	F007341	VRKVIFSPSAFRHGYSEEDFYELLAGRYLKIRSQRGIDDVYELLGQNLSGDYLHVVYRVMSDGAFRVFHISRMTDQQKRRFRRSSK*
Ga0120401_1411559	Ga0120401_14115591	F101182	MDTYEEGLQYERKMDRISEQIEELMLDAMIAALKKIRDRNLFYSEIETRPQNDPYP
Ga0120401_1418441	Ga0120401_14184411	F011939	MLLPHDIKCGRTRKGLKEMPRLTTQLAEDALRGEVHRLDKRVQLIGVSQAKKKDEYRVTLLKDGRTGSASIKKDLIKEYLAGEGKGAALRKALGKAVSHLSIQYR*
Ga0120401_1422954	Ga0120401_14229541	F083739	MSENQNLNITDEIINDLKKKFEAYPLFQITDTVSGDTFIIRGSNWDEFARVGNVQPGKENRVPLNMVKAFIVWPEIDQQDIEYNRSGNWQPGRIVALAEQIQEVLGYNKAFAVKKL*
Ga0120401_1424084	Ga0120401_14240841	F083361	LRLAMVILEAADVASQHDLAQAVGFTQSRSLREYMQRVREEGLVGLLDRPIPGRPAITTRTPVEKALFQAILSAVIDEHILPDDATLAKRVNQALSEDQGSEGGCVTVSMVETIRLRWEIQRPLVNQQLQAAQQPAQPESDLAHLGRTRVGGAFILAVLLVETGWLNLAHLLPKVAKYAVTSTQWLLTAIFAVIFGIRRAFHLDDVRDIGFALLTGRPRPLTHGTFQHLLRATPAEDAEKFYQASAQLEVQAPGEGVRRISLD
Ga0120401_1459408	Ga0120401_14594082	F049629	PCLIELLIVCLQLKTITMKDLIDFKNQQITALQDSNAQKEARIAILETWIFELTDDKCPRDYKKVIRTELLKTN*
Ga0120401_1496135	Ga0120401_14961351	F076639	MENTTEKDKPERADILWLNEAITYLGLDRLGIARPDQAMYRLIKKGALHPKKICGRFAFDKTELDIVAANGDQKRGRGRPRKVG*