Overview
| Basic Information | |
|---|---|
| IMG/M Taxon OID | 3300009391 Open in IMG/M |
| GOLD Reference (Study | Sequencing Project | Analysis Project) | Gs0118143 | Gp0131537 | Ga0116591 |
| Sample Name | Microbial communities from sediment of the River Tyne Estuary, UK ? Pasteurized_686d_1 SPAdes |
| Sequencing Status | Permanent Draft |
| Sequencing Center | University of Liverpool |
| Published? | N |
| Use Policy | Open |
| Dataset Contents | |
|---|---|
| Total Genome Size | 156680471 |
| Sequencing Scaffolds | 13 |
| Novel Protein Genes | 15 |
| Associated Families | 12 |
| Dataset Phylogeny | |
|---|---|
| Taxonomy Groups | Number of Scaffolds |
| All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Anaerolineae → unclassified Anaerolineae → Anaerolineae bacterium CG_4_9_14_0_8_um_filter_58_9 | 1 |
| All Organisms → cellular organisms → Bacteria | 2 |
| All Organisms → Viruses → Predicted Viral | 3 |
| Not Available | 4 |
| All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Dojkabacteria → Candidatus Dojkabacteria bacterium | 1 |
| All Organisms → cellular organisms → Archaea → TACK group → Candidatus Verstraetearchaeota → Candidatus Methanomethylicia → Candidatus Methanomethylicales → Candidatus Methanomethylicaceae → Candidatus Methanosuratincola → unclassified Candidatus Methanosuratincola → Candidatus Methanosuratincola sp. | 1 |
| All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon | 1 |
Ecosystem and Geography
| Ecosystem Assignment (GOLD) | |
|---|---|
| Name | Anaerobic Oil Degrading Microbial Communities From River Tyne Estuarine Sediment |
| Type | Environmental |
| Taxonomy | Environmental → Aquatic → Sediment → Unclassified → Unclassified → Sediment → Anaerobic Oil Degrading Microbial Communities From River Tyne Estuarine Sediment |
| Alternative Ecosystem Assignments | |
|---|---|
| Environment Ontology (ENVO) | estuarine biome → estuary → sediment |
| Earth Microbiome Project Ontology (EMPO) | Free-living → Saline → Sediment (saline) |
| Location Information | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location | United Kingdom | |||||||
| Coordinates | Lat. (o) | 54.9632021 | Long. (o) | -1.6348029 | Alt. (m) | N/A | Depth (m) | N/A |
| Location on Map | ||||||||
                | ||||||||
| Zoom: | Powered by OpenStreetMap © | |||||||
