Metagenome / Metatranscriptome Family F079177

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F079177
Family Type	Metagenome / Metatranscriptome
Number of Sequences	116
Average Sequence Length	75 residues
Representative Sequence	MNFTSKFIEAALAISFSKVEEIKNNRIKELLEIKSKIKEDPIVVENWFDNEINKIRKVTENNSSSIDIESLINKIK
Number of Associated Samples	78
Number of Associated Scaffolds	116

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	75.86 %
% of genes near scaffold ends (potentially truncated)	21.55 %
% of genes from short scaffolds (< 2000 bps)	77.59 %
Associated GOLD sequencing projects	69
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.45

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Unclassified (63.793 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil (20.690 % of family members)
Environment Ontology (ENVO)	Unclassified (27.586 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (36.207 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 66.35% β-sheet: 0.00% Coil/Unstructured: 33.65%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.45
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.45
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 116 Family Scaffolds
PF00072	Response_reg	2.59
PF00005	ABC_tran	2.59
PF13473	Cupredoxin_1	1.72
PF04266	ASCH	0.86
PF07883	Cupin_2	0.86
PF02694	UPF0060	0.86
PF06911	Senescence	0.86
PF03413	PepSY	0.86
PF00324	AA_permease	0.86
PF00149	Metallophos	0.86
PF01145	Band_7	0.86
PF13489	Methyltransf_23	0.86
PF08423	Rad51	0.86
PF01243	Putative_PNPOx	0.86

COG ID	Name	Functional Category	% Frequency in 116 Family Scaffolds
COG0468	RecA/RadA recombinase	Replication, recombination and repair [L]	0.86
COG0531	Serine transporter YbeC, amino acid:H+ symporter family	Amino acid transport and metabolism [E]	0.86
COG0833	Amino acid permease	Amino acid transport and metabolism [E]	0.86
COG1113	L-asparagine transporter or related permease	Amino acid transport and metabolism [E]	0.86
COG1115	Na+/alanine symporter	Amino acid transport and metabolism [E]	0.86
COG1742	Uncharacterized inner membrane protein YnfA, drug/metabolite transporter superfamily	General function prediction only [R]	0.86
COG2411	Predicted RNA-binding protein, contains PUA-like ASCH domain	General function prediction only [R]	0.86
COG3097	Uncharacterized conserved protein YqfB, UPF0267 family	Function unknown [S]	0.86
COG4405	Predicted RNA-binding protein YhfF, contains PUA-like ASCH domain	General function prediction only [R]	0.86

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	63.79 %
All Organisms	root	All Organisms	36.21 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	63.79 %
cellular organisms	root	All Organisms → cellular organisms	36.21 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	63.79 %
Archaea	superkingdom	All Organisms → cellular organisms → Archaea	36.21 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	63.79 %
TACK group	clade	All Organisms → cellular organisms → Archaea → TACK group	22.41 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	63.79 %
Thaumarchaeota	phylum	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota	22.41 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	63.79 %
Nitrososphaeria	class	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrososphaeria	18.10 %
Nitrosopumilales	order	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales	2.59 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	63.79 %
Nitrososphaerales	order	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrososphaeria → Nitrososphaerales	18.10 %
unclassified Nitrosopumilales	no rank	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales → unclassified Nitrosopumilales	2.59 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	63.79 %
Nitrososphaeraceae	family	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrososphaeria → Nitrososphaerales → Nitrososphaeraceae	18.10 %
Nitrosopumilales archaeon	species	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales → unclassified Nitrosopumilales → Nitrosopumilales archaeon	2.59 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	63.79 %
Nitrososphaera	genus	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrososphaeria → Nitrososphaerales → Nitrososphaeraceae → Nitrososphaera	7.76 %
unclassified Nitrososphaeraceae	no rank	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrososphaeria → Nitrososphaerales → Nitrososphaeraceae → unclassified Nitrososphaeraceae	5.17 %
Candidatus Nitrosocosmicus	genus	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrososphaeria → Nitrososphaerales → Nitrososphaeraceae → Candidatus Nitrosocosmicus	3.45 %
Nitrosopumilales archaeon	species	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales → unclassified Nitrosopumilales → Nitrosopumilales archaeon	2.59 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	63.79 %
Candidatus Nitrososphaera evergladensis	species	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrososphaeria → Nitrososphaerales → Nitrososphaeraceae → Nitrososphaera → Candidatus Nitrososphaera evergladensis	6.03 %
Nitrososphaeraceae archaeon	species	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrososphaeria → Nitrososphaerales → Nitrososphaeraceae → unclassified Nitrososphaeraceae → Nitrososphaeraceae archaeon	5.17 %
Nitrosopumilales archaeon	species	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales → unclassified Nitrosopumilales → Nitrosopumilales archaeon	2.59 %
Candidatus Nitrosocosmicus franklandus	species	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrososphaeria → Nitrososphaerales → Nitrososphaeraceae → Candidatus Nitrosocosmicus → Candidatus Nitrosocosmicus franklandus	0.86 %
Candidatus Nitrosocosmicus oleophilus	species	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrososphaeria → Nitrososphaerales → Nitrososphaeraceae → Candidatus Nitrosocosmicus → Candidatus Nitrosocosmicus oleophilus	0.86 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2228664021\|ICCgaii200_c0908695	Not Available	1784	Open in IMG/M
3300000890\|JGI11643J12802_10767509	All Organisms → cellular organisms → Archaea	1980	Open in IMG/M
3300003321\|soilH1_10259780	Not Available	2941	Open in IMG/M
3300003987\|Ga0055471_10071507	Not Available	977	Open in IMG/M
3300003987\|Ga0055471_10117969	Not Available	790	Open in IMG/M
3300003993\|Ga0055468_10185990	Not Available	633	Open in IMG/M
3300003996\|Ga0055467_10173446	Not Available	655	Open in IMG/M
3300003997\|Ga0055466_10069445	Not Available	910	Open in IMG/M
3300004058\|Ga0055498_10082777	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrososphaeria → Nitrososphaerales → Nitrososphaeraceae → Nitrososphaera → Candidatus Nitrososphaera evergladensis	624	Open in IMG/M
3300004062\|Ga0055500_10079399	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrososphaeria → Nitrososphaerales → Nitrososphaeraceae → Nitrososphaera → Candidatus Nitrososphaera evergladensis	703	Open in IMG/M
3300004156\|Ga0062589_101222340	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrososphaeria → Nitrososphaerales → Nitrososphaeraceae → Nitrososphaera → Candidatus Nitrososphaera evergladensis	720	Open in IMG/M
3300004157\|Ga0062590_100345454	All Organisms → cellular organisms → Archaea	1187	Open in IMG/M
3300004463\|Ga0063356_100555497	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrososphaeria → Nitrososphaerales → Nitrososphaeraceae → Nitrososphaera	1537	Open in IMG/M
3300004463\|Ga0063356_100758408	Not Available	1346	Open in IMG/M
3300004463\|Ga0063356_101138537	Not Available	1128	Open in IMG/M
3300004463\|Ga0063356_101163571	Not Available	1117	Open in IMG/M
3300004463\|Ga0063356_101663743	Not Available	953	Open in IMG/M
3300004463\|Ga0063356_105034980	Not Available	568	Open in IMG/M
3300004480\|Ga0062592_101338762	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrososphaeria → Nitrososphaerales → Nitrososphaeraceae → Nitrososphaera → Candidatus Nitrososphaera evergladensis	678	Open in IMG/M
3300006169\|Ga0082029_1584510	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrososphaeria → Nitrososphaerales → Nitrososphaeraceae → Nitrososphaera → Candidatus Nitrososphaera evergladensis	591	Open in IMG/M
3300006792\|Ga0075530_1252690	Not Available	544	Open in IMG/M
3300006844\|Ga0075428_100995590	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrososphaeria → Nitrososphaerales → Nitrososphaeraceae → Nitrososphaera → Candidatus Nitrososphaera evergladensis	887	Open in IMG/M
3300006844\|Ga0075428_101413318	Not Available	730	Open in IMG/M
3300006845\|Ga0075421_102056630	Not Available	607	Open in IMG/M
3300006845\|Ga0075421_102698543	Not Available	513	Open in IMG/M
3300006846\|Ga0075430_100047230	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota	3634	Open in IMG/M
3300006876\|Ga0079217_10503450	Not Available	754	Open in IMG/M
3300006876\|Ga0079217_11192937	Not Available	578	Open in IMG/M
3300006876\|Ga0079217_11243792	Not Available	570	Open in IMG/M
3300006894\|Ga0079215_10350560	Not Available	844	Open in IMG/M
3300006918\|Ga0079216_10869305	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrososphaeria → Nitrososphaerales → Nitrososphaeraceae → Nitrososphaera → Candidatus Nitrososphaera evergladensis	674	Open in IMG/M
3300007004\|Ga0079218_10303749	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota	1298	Open in IMG/M
3300007004\|Ga0079218_12146957	Not Available	646	Open in IMG/M
3300009081\|Ga0105098_10088171	Not Available	1323	Open in IMG/M
3300009094\|Ga0111539_10106668	All Organisms → cellular organisms → Archaea	3286	Open in IMG/M
3300009094\|Ga0111539_10231401	Not Available	2152	Open in IMG/M
3300009094\|Ga0111539_13077844	Not Available	538	Open in IMG/M
3300009131\|Ga0115027_10853651	Not Available	700	Open in IMG/M
3300009146\|Ga0105091_10085554	All Organisms → cellular organisms → Archaea	1432	Open in IMG/M
3300009146\|Ga0105091_10177818	Not Available	1007	Open in IMG/M
3300009146\|Ga0105091_10512548	Not Available	610	Open in IMG/M
3300009156\|Ga0111538_11024768	Not Available	1044	Open in IMG/M
3300009157\|Ga0105092_10104638	Not Available	1555	Open in IMG/M
3300009157\|Ga0105092_10679444	Not Available	598	Open in IMG/M
3300009168\|Ga0105104_10013385	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrososphaeria → Nitrososphaerales → Nitrososphaeraceae	5042	Open in IMG/M
3300009168\|Ga0105104_10028377	All Organisms → cellular organisms → Archaea	3171	Open in IMG/M
3300009168\|Ga0105104_10060998	All Organisms → cellular organisms → Archaea	2044	Open in IMG/M
3300009168\|Ga0105104_10107493	Not Available	1502	Open in IMG/M
3300009391\|Ga0116591_1040103	Not Available	761	Open in IMG/M
3300009553\|Ga0105249_12390664	Not Available	601	Open in IMG/M
3300009789\|Ga0126307_10000835	All Organisms → cellular organisms → Archaea	20284	Open in IMG/M
3300009789\|Ga0126307_10003699	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrososphaeria → Nitrososphaerales → Nitrososphaeraceae	10492	Open in IMG/M
3300009840\|Ga0126313_10242197	Not Available	1397	Open in IMG/M
3300010036\|Ga0126305_10002422	All Organisms → cellular organisms → Archaea	8502	Open in IMG/M
3300010036\|Ga0126305_10094129	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrososphaeria → Nitrososphaerales → Nitrososphaeraceae → Nitrososphaera	1789	Open in IMG/M
3300010037\|Ga0126304_10014565	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrososphaeria → Nitrososphaerales → Nitrososphaeraceae → Candidatus Nitrosocosmicus → Candidatus Nitrosocosmicus franklandus	4370	Open in IMG/M
3300010039\|Ga0126309_10250207	Not Available	1004	Open in IMG/M
3300011333\|Ga0127502_10507204	Not Available	512	Open in IMG/M
3300012897\|Ga0157285_10010386	All Organisms → cellular organisms → Archaea	1812	Open in IMG/M
3300012908\|Ga0157286_10010956	Not Available	1774	Open in IMG/M
3300012911\|Ga0157301_10005183	All Organisms → cellular organisms → Archaea	2379	Open in IMG/M
3300013306\|Ga0163162_11152988	Not Available	879	Open in IMG/M
3300014311\|Ga0075322_1001125	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrososphaeria → Nitrososphaerales → Nitrososphaeraceae → unclassified Nitrososphaeraceae → Nitrososphaeraceae archaeon	4044	Open in IMG/M
3300015077\|Ga0173483_10514219	Not Available	641	Open in IMG/M
3300015371\|Ga0132258_10328586	All Organisms → cellular organisms → Archaea	3773	Open in IMG/M
3300015374\|Ga0132255_100446592	Not Available	1892	Open in IMG/M
3300018067\|Ga0184611_1089004	Not Available	1064	Open in IMG/M
3300018073\|Ga0184624_10010999	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrososphaeria → Nitrososphaerales → Nitrososphaeraceae → unclassified Nitrososphaeraceae → Nitrososphaeraceae archaeon	3150	Open in IMG/M
3300018073\|Ga0184624_10122493	Not Available	1127	Open in IMG/M
3300018432\|Ga0190275_10144855	Not Available	2181	Open in IMG/M
3300018432\|Ga0190275_10174744	All Organisms → cellular organisms → Archaea	2006	Open in IMG/M
3300018432\|Ga0190275_10907774	Not Available	949	Open in IMG/M
3300018432\|Ga0190275_11668122	Not Available	715	Open in IMG/M
3300018465\|Ga0190269_10407697	Not Available	844	Open in IMG/M
3300018466\|Ga0190268_10109335	Not Available	1308	Open in IMG/M
3300018466\|Ga0190268_10354740	Not Available	916	Open in IMG/M
3300018466\|Ga0190268_11318599	Not Available	610	Open in IMG/M
3300018469\|Ga0190270_11370466	Not Available	752	Open in IMG/M
3300018469\|Ga0190270_11408196	Not Available	743	Open in IMG/M
3300018476\|Ga0190274_10103791	All Organisms → cellular organisms → Archaea	2269	Open in IMG/M
3300018476\|Ga0190274_10382752	Not Available	1355	Open in IMG/M
3300018481\|Ga0190271_10334433	All Organisms → cellular organisms → Archaea	1589	Open in IMG/M
3300018481\|Ga0190271_10374523	Not Available	1511	Open in IMG/M
3300018481\|Ga0190271_11102435	Not Available	917	Open in IMG/M
3300019356\|Ga0173481_10002139	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrososphaeria → Nitrososphaerales → Nitrososphaeraceae → unclassified Nitrososphaeraceae → Nitrososphaeraceae archaeon	4957	Open in IMG/M
3300019356\|Ga0173481_10009230	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales → unclassified Nitrosopumilales → Nitrosopumilales archaeon	2746	Open in IMG/M
3300024430\|Ga0196962_10002253	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrososphaeria → Nitrososphaerales → Nitrososphaeraceae → Candidatus Nitrosocosmicus → Candidatus Nitrosocosmicus oleophilus	6268	Open in IMG/M
3300025537\|Ga0210061_1004149	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrososphaeria → Nitrososphaerales → Nitrososphaeraceae → unclassified Nitrososphaeraceae → Nitrososphaeraceae archaeon	2257	Open in IMG/M
3300025559\|Ga0210087_1024710	Not Available	1221	Open in IMG/M
3300025567\|Ga0210076_1005145	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrososphaeria → Nitrososphaerales → Nitrososphaeraceae → unclassified Nitrososphaeraceae → Nitrososphaeraceae archaeon	2990	Open in IMG/M
3300025567\|Ga0210076_1009607	Not Available	2092	Open in IMG/M
3300025792\|Ga0210143_1025010	Not Available	1040	Open in IMG/M
3300025944\|Ga0207661_11960536	Not Available	531	Open in IMG/M
3300025961\|Ga0207712_12108002	Not Available	504	Open in IMG/M
3300026535\|Ga0256867_10004026	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales → unclassified Nitrosopumilales → Nitrosopumilales archaeon	6399	Open in IMG/M
3300026535\|Ga0256867_10020798	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrososphaeria → Nitrososphaerales → Nitrososphaeraceae → Candidatus Nitrosocosmicus	2806	Open in IMG/M
3300027075\|Ga0214467_1014555	Not Available	824	Open in IMG/M
3300027552\|Ga0209982_1051708	Not Available	663	Open in IMG/M
3300027637\|Ga0209818_1271773	Not Available	517	Open in IMG/M
3300027647\|Ga0214468_1021622	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales → unclassified Nitrosopumilales → Nitrosopumilales archaeon	1750	Open in IMG/M
3300027743\|Ga0209593_10036581	All Organisms → cellular organisms → Archaea	1923	Open in IMG/M
3300027743\|Ga0209593_10075957	All Organisms → cellular organisms → Archaea	1259	Open in IMG/M
3300027907\|Ga0207428_10484065	Not Available	900	Open in IMG/M
3300027907\|Ga0207428_10595515	Not Available	797	Open in IMG/M
3300027909\|Ga0209382_10277072	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrososphaeria → Nitrososphaerales → Nitrososphaeraceae → Candidatus Nitrosocosmicus	1897	Open in IMG/M
3300027909\|Ga0209382_11999796	Not Available	556	Open in IMG/M
3300028380\|Ga0268265_12200794	Not Available	558	Open in IMG/M
3300030620\|Ga0302046_11233992	Not Available	587	Open in IMG/M
3300031538\|Ga0310888_10055256	Not Available	1876	Open in IMG/M
3300031562\|Ga0310886_10208065	Not Available	1071	Open in IMG/M
3300031562\|Ga0310886_10260207	Not Available	975	Open in IMG/M
3300031847\|Ga0310907_10691812	Not Available	563	Open in IMG/M
3300031908\|Ga0310900_11280967	Not Available	612	Open in IMG/M
3300031911\|Ga0307412_11072629	Not Available	715	Open in IMG/M
3300031943\|Ga0310885_10134108	Not Available	1167	Open in IMG/M
3300032075\|Ga0310890_10203554	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrososphaeria → Nitrososphaerales → Nitrososphaeraceae → unclassified Nitrososphaeraceae → Nitrososphaeraceae archaeon	1359	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	76.72%
Host-Associated	Host-Associated	23.28%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	50.86%
Aquatic	Environmental → Aquatic	25.86%
Plants	Host-Associated → Plants	23.28%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	50.86%
Rhizosphere	Host-Associated → Plants → Rhizosphere	13.79%
Freshwater	Environmental → Aquatic → Freshwater	12.07%
Marine	Environmental → Aquatic → Marine	10.34%
Rhizoplane	Host-Associated → Plants → Rhizoplane	9.48%
Sediment	Environmental → Aquatic → Sediment	3.45%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	48.28%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	13.79%
Sediment	Environmental → Aquatic → Freshwater → Sediment	11.21%
Wetlands	Environmental → Aquatic → Marine → Wetlands	10.34%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	7.76%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	3.45%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	1.72%
Groundwater	Environmental → Aquatic → Freshwater → Groundwater	0.86%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	0.86%
Loam	Environmental → Terrestrial → Soil → Loam	0.86%
Sand	Environmental → Terrestrial → Soil → Sand	0.86%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	27.59%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	13.79%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	11.21%
Unclassified	Environmental → Aquatic → Marine → Wetlands → Unclassified	10.34%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	10.34%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	7.76%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	6.03%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	3.45%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	1.72%
Uranium Contaminated	Environmental → Terrestrial → Soil → Unclassified → Uranium Contaminated	1.72%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	1.72%
Unclassified	Environmental → Aquatic → Freshwater → Groundwater → Unclassified	0.86%
Permafrost	Environmental → Terrestrial → Soil → Unclassified → Permafrost	0.86%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	0.86%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	0.86%
Desert	Environmental → Terrestrial → Soil → Sand → Desert	0.86%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	20.69%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	11.21%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Freshwater Sediment	10.34%
Natural And Restored Wetlands	Environmental → Aquatic → Marine → Wetlands → Unclassified → Natural And Restored Wetlands	10.34%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	6.90%
Serpentine Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Serpentine Soil	6.03%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	6.03%
Arabidopsis Thaliana Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Thaliana Rhizosphere	6.03%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	2.59%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	2.59%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	1.72%
Soil	Environmental → Terrestrial → Soil → Unclassified → Uranium Contaminated → Soil	1.72%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	1.72%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	1.72%
Wetland	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Wetland	0.86%
Soil	Environmental → Aquatic → Freshwater → Groundwater → Unclassified → Soil	0.86%
Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Sediment	0.86%
Termite Nest	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Termite Nest	0.86%
Sugarcane Root And Bulk Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Sugarcane Root And Bulk Soil	0.86%
Arctic Peat Soil	Environmental → Terrestrial → Soil → Unclassified → Permafrost → Arctic Peat Soil	0.86%
Natural And Restored Wetlands	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Natural And Restored Wetlands	0.86%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	0.86%
Soil	Environmental → Terrestrial → Soil → Sand → Desert → Soil	0.86%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	0.86%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	0.86%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere	0.86%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2228664021	Soil microbial communities from Great Prairies - Iowa, Continuous Corn soil	Environmental	Open in IMG/M
3300000890	Soil microbial communities from Great Prairies - Iowa, Continuous Corn soil	Environmental	Open in IMG/M
3300003321	Sugarcane bulk soil Sample H1	Environmental	Open in IMG/M
3300003987	Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - MayberryNW_TuleB_D2	Environmental	Open in IMG/M
3300003993	Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - MayberryNW_CattailC_D2	Environmental	Open in IMG/M
3300003996	Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - MayberryNW_CattailB_D2	Environmental	Open in IMG/M
3300003997	Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - MayberryNW_CattailC_D1	Environmental	Open in IMG/M
3300004058	Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - Sandmound_ThreeSqB_D1	Environmental	Open in IMG/M
3300004062	Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - Sandmound_ThreeSqA_D2	Environmental	Open in IMG/M
3300004156	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Combined assembly of AARS Block 1	Environmental	Open in IMG/M
3300004157	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - - Combined assembly of AARS Block 2	Environmental	Open in IMG/M
3300004463	Combined assembly of Arabidopsis thaliana microbial communities	Host-Associated	Open in IMG/M
3300004480	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 4	Environmental	Open in IMG/M
3300006169	Termite nest microbial communities from Madurai, India	Environmental	Open in IMG/M
3300006792	Arctic peat soil microbial communities from the Barrow Environmental Observatory site, Barrow, Alaska, USA - NGEE PermafrostL1-D	Environmental	Open in IMG/M
3300006844	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2	Host-Associated	Open in IMG/M
3300006845	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD5	Host-Associated	Open in IMG/M
3300006846	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4	Host-Associated	Open in IMG/M
3300006876	Agricultural soil microbial communities from Utah to study Nitrogen management - NC AS200	Environmental	Open in IMG/M
3300006894	Agricultural soil microbial communities from Utah to study Nitrogen management - NC Control	Environmental	Open in IMG/M
3300006918	Agricultural soil microbial communities from Utah to study Nitrogen management - NC AS100	Environmental	Open in IMG/M
3300007004	Agricultural soil microbial communities from Utah to study Nitrogen management - NC Compost	Environmental	Open in IMG/M
3300009081	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P7 Core (1) Depth 19-21cm May2015	Environmental	Open in IMG/M
3300009094	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2)	Host-Associated	Open in IMG/M
3300009131	Wetland microbial communities from Old Woman Creek Reserve in Ohio, USA - Open_0915_D1	Environmental	Open in IMG/M
3300009146	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P7 Core (1) Depth 10-12cm March2015	Environmental	Open in IMG/M
3300009156	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD1 (version 2)	Host-Associated	Open in IMG/M
3300009157	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P7 Core (1) Depth 19-21cm March2015	Environmental	Open in IMG/M
3300009168	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P7 Core (6) Depth 19-21cm September2015	Environmental	Open in IMG/M
3300009391	Microbial communities from sediment of the River Tyne Estuary, UK ? Pasteurized_686d_1 SPAdes	Environmental	Open in IMG/M
3300009553	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG	Host-Associated	Open in IMG/M
3300009789	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot28	Environmental	Open in IMG/M
3300009840	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot105A	Environmental	Open in IMG/M
3300010036	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot26	Environmental	Open in IMG/M
3300010037	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot25	Environmental	Open in IMG/M
3300010039	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot56	Environmental	Open in IMG/M
3300011333	Cornfield soil microbial communities from Stanford, California, USA - CI-CA-CRN metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300012897	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S074-202C-1	Environmental	Open in IMG/M
3300012908	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S089-202R-1	Environmental	Open in IMG/M
3300012911	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S088-202R-2	Environmental	Open in IMG/M
3300013306	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG	Host-Associated	Open in IMG/M
3300014311	Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - MayberryNW_CattailB_D1	Environmental	Open in IMG/M
3300015077	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S178-409R-2 (version 2)	Environmental	Open in IMG/M
3300015371	Combined assembly of cpr5 and col0 rhizosphere and soil	Host-Associated	Open in IMG/M
3300015374	Col-0 rhizosphere combined assembly	Host-Associated	Open in IMG/M
3300018067	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_5_coex	Environmental	Open in IMG/M
3300018073	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_5_b1	Environmental	Open in IMG/M
3300018432	Populus adjacent soil microbial communities from riparian zone of Yellowstone River, Montana, USA - 550 T	Environmental	Open in IMG/M
3300018465	Populus adjacent soil microbial communities from riparian zone of Blue River, Arizona, USA - 249 IS	Environmental	Open in IMG/M
3300018466	Populus adjacent soil microbial communities from riparian zone of Blue River, Arizona, USA - 249 T	Environmental	Open in IMG/M
3300018469	Populus adjacent soil microbial communities from riparian zone of Weber River, Utah, USA - 320 T	Environmental	Open in IMG/M
3300018476	Populus adjacent soil microbial communities from riparian zone of Yellowstone River, Montana, USA - 531 T	Environmental	Open in IMG/M
3300018481	Populus adjacent soil microbial communities from riparian zone of Weber River, Utah, USA - 356 T	Environmental	Open in IMG/M
3300019356	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S073-202C-2 (version 2)	Environmental	Open in IMG/M
3300024430	Soil microbial communities from Anza Borrego desert, Southern California, United States - S3+v_20	Environmental	Open in IMG/M
3300025537	Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - MayberryNW_CattailC_D1 (SPAdes)	Environmental	Open in IMG/M
3300025559	Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - MayberryNW_CattailB_D2 (SPAdes)	Environmental	Open in IMG/M
3300025567	Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - MayberryNW_CattailA_D2 (SPAdes)	Environmental	Open in IMG/M
3300025792	Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - MayberryNW_TuleC_D2 (SPAdes)	Environmental	Open in IMG/M
3300025944	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG (SPAdes)	Environmental	Open in IMG/M
3300025961	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026535	Soil microbial communities from uranium-contaminated site in the Upper Colorado River Basin, Wyoming, United States - RVT150D86 (HiSeq)	Environmental	Open in IMG/M
3300027075	Soil microbial communities from uranium-contaminated site in the Upper Colorado River Basin, Wyoming, United States - RVT160D0 HiSeq	Environmental	Open in IMG/M
3300027552	Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Inoculated plant M1 S AM (SPAdes)	Host-Associated	Open in IMG/M
3300027637	Agricultural soil microbial communities from Utah to study Nitrogen management - NC AS200 (SPAdes)	Environmental	Open in IMG/M
3300027647	Soil microbial communities from uranium-contaminated site in the Upper Colorado River Basin, Wyoming, United States - RVT155D38 HiSeq	Environmental	Open in IMG/M
3300027743	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P7 Core (6) Depth 19-21cm September2015 (SPAdes)	Environmental	Open in IMG/M
3300027907	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (SPAdes)	Host-Associated	Open in IMG/M
3300027909	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD5 (SPAdes)	Host-Associated	Open in IMG/M
3300028380	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 (SPAdes)	Host-Associated	Open in IMG/M
3300030620	Soil microbial communities from uranium-contaminated site in the Upper Colorado River Basin, Wyoming, United States - RVT147D111	Environmental	Open in IMG/M
3300031538	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T20D1	Environmental	Open in IMG/M
3300031562	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T60D3	Environmental	Open in IMG/M
3300031847	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C48D4	Environmental	Open in IMG/M
3300031908	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C24D1	Environmental	Open in IMG/M
3300031911	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-1	Host-Associated	Open in IMG/M
3300031943	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T60D2	Environmental	Open in IMG/M
3300032075	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T20D3	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
ICCgaii200_09086952	2228664021	Soil	MTLTSKFIEAALAISFPKIEEIKNNRIKELIEMKLKIKEDPTIVENWFDNEINKIINVTENNSSINIESLIKNLK
JGI11643J12802_107675092	3300000890	Soil	MTLTSKFIEAALAISFPKIEEIKNNRIKELIEMKLKIKEDPTIVENWFDNEINKIINVTENNSSINIESLIKNLK*
soilH1_102597806	3300003321	Sugarcane Root And Bulk Soil	LEYSNKVLDVMNFTSKFIQAALTMSFPKIEELKQNRIKELLEIKSKIKEDPEIVERWFDNEISKITTTMENNSYTDIESIINKIK*
Ga0055471_100715073	3300003987	Natural And Restored Wetlands	MNFTSKFIETALAISFSKVEEVKKNRIKELLEIKSKIKEDSILVENWFDNEINKIRKVTENNSSFIDIESLINKIK*
Ga0055471_101179693	3300003987	Natural And Restored Wetlands	MMNFTSKFIQAALALSSFKVEEIKNNRIKELLEIKSKIKDNPIAVENWFDNEINKIINVTENSASVDIESLINKI
Ga0055468_101859901	3300003993	Natural And Restored Wetlands	MMNFTSKFIQAALALSSFKVEEIKNNRIKELLEIKSKIKDNPIAVENWFDNEINKIINVTENSASVDIESLINKIK*
Ga0055467_101734461	3300003996	Natural And Restored Wetlands	LAVSFSKVEEIKNNRIKELLEIKSKIKEDPIVVENWFDNEIDKISNVMENNSSSTDIESLINKIK*
Ga0055466_100694451	3300003997	Natural And Restored Wetlands	SFSKVEEIKNNRIKELLEIKSKIKEDPIVVENWFNNEIDKISNVMENNSSSTDIESLINKIK*
Ga0055498_100827771	3300004058	Natural And Restored Wetlands	MMNFTSKFIQAALALSSFKVEEIKNNRIKELLEIKSKIKDDPIAVENWFDNEINKIINVTENSASVDI
Ga0055500_100793991	3300004062	Natural And Restored Wetlands	MMNLTSKFIQAALALSSFKVEEIKNNRIKELLEIKSKIKDDPIAVENWFDNEINKIINVTENSASVDIESLINKIK*
Ga0062589_1012223401	3300004156	Soil	MDFTSKFIETALGISFSKVEEVKNNRIKELLEIKSKIKEDPILVENWFDNQINKIRKVTENNSSFIDIESLINKIK*
Ga0062590_1003454541	3300004157	Soil	MMMNWTSKFIQAALSLSFFKIEEVKNNRIKELLDMKSKIKNDPLAVENWFDNEINKIINVTENGYHSADLESIIDKIK*
Ga0063356_1005554972	3300004463	Arabidopsis Thaliana Rhizosphere	MNFTSKFIETALGISFSKVEEVKNNRIKELLEIKSKIKEDPILVENWFDNQINKIRKVTENNSSFIDIESLINKIK*
Ga0063356_1007584081	3300004463	Arabidopsis Thaliana Rhizosphere	MNFISKFIEAALAISFSKVEDIKNNRIKGLLEIKSKIKEDPIVVENWFDNEINKILKVIENNNLSIDIESLINKIKIFIY*
Ga0063356_1011385371	3300004463	Arabidopsis Thaliana Rhizosphere	MNFTSKFIEAALAISFPKVEEIKNNRIKELREIKSKIKEDPIVVENWFDNEINKILNLIENNNNSSSDIESLINKIK*
Ga0063356_1011635712	3300004463	Arabidopsis Thaliana Rhizosphere	MMNWTSKFIQAALSLSFFKIEEVKNNRIKELLDMKSKIKNDPLAVENWFDNEINKIINVTENGYHSADLESIIDKIK*
Ga0063356_1016637431	3300004463	Arabidopsis Thaliana Rhizosphere	KRIGRMNFTSKFIEAALAISFSKVEEIKNNRIKELLEIKSKIKEDPTTVEDWFDNEINKILKVIENNSSSSDIESLINKIK*
Ga0063356_1050349801	3300004463	Arabidopsis Thaliana Rhizosphere	MMNWASKFIQAALALSFSRVEEIKNNRIKELREMKSKIKNDPLVVENWFDNEINKIINVTENSDYSTD
Ga0062592_1013387621	3300004480	Soil	MDFTSKFIETALGISFSKVEEVKNNRIKELLEIKSKIKEDPILVENWFDNQINKIRKVTENNSSFKDIESVINKIK*
Ga0082029_15845101	3300006169	Termite Nest	MTNFTSKFIQAALALSFSKVEEIKDNRIKELLEIKSNIKENPVIVENWFDNEIKKIINVTENKSSTDIESLINKIK*
Ga0075530_12526901	3300006792	Arctic Peat Soil	MNFTSKFIETALGISFSKVEEVKNNRIKELLEIKSKIKEDPILVENWFDNEINKIRKVTENNSSSIDIESLINKIK*
Ga0075428_1009955901	3300006844	Populus Rhizosphere	MMNWASKFIQVALALSFSRVEEIKNNRIKELREMKSKIKNDPLVVENWFDNEINKIINVTENSEYSTDLESIIDKIK*
Ga0075428_1014133181	3300006844	Populus Rhizosphere	AALAISFPKVEEIKNNRIKELREIKSKIKEDPIVVENWFDKEINKILNVIENNNTSSDIESLINKIK*
Ga0075421_1020566301	3300006845	Populus Rhizosphere	MNFTSKFIEAALAISFSKVEEIKNNRIKELLEIKSKIKEDPIVVETWFDNEINKILNVIQNNSSSSDIESLIKKIK*
Ga0075421_1026985431	3300006845	Populus Rhizosphere	KFIQAALALSFSRVEEIKNNRIKELREMKSKIKNDPLVVENWFDNEINKIINVTENSDYSTDLESLIDKIK*
Ga0075430_1000472302	3300006846	Populus Rhizosphere	MMNWASKFIQAALALSFSRVEEIKNNRIKELREMKSKIKNDPLVVENWFDNEINKIINVTENSDYSTDLESLIDKIK*
Ga0079217_105034502	3300006876	Agricultural Soil	MNFTSKFIETALGISFSKIEEVKNNRIKELLEIKSKIKENPILVENWFDNEINKIRKVTENNSSSIDIESLINKIK*
Ga0079217_111929372	3300006876	Agricultural Soil	MDFTSKFIQAAFAVSFSKVEEIKNNRIKELLEIRSKIKEDPLVVENWFDNEINKIRKVTENNSSSIDIESLINKIK*
Ga0079217_112437921	3300006876	Agricultural Soil	MNFTSKFIQAAFALSFSKVEEIKNNRIKELLEIKSKIKEDPIIVENWFDNEINKIKNVTENHSSTDIESLINKIK*
Ga0079215_103505602	3300006894	Agricultural Soil	MNFTSKFIQAALALSFSKVEEIKNNRIKELLEIKSKIKEDPIVVENWFDNEINKIKNVTENNSSTDIESLINKIK*
Ga0079216_108693051	3300006918	Agricultural Soil	MNFTSKFIQAAIALSFSKVEEIKNNRIKELLEIKSKIKEDPIVVENWFDNEINKIKNVTENNSSTDIESLINKIK*
Ga0079218_103037492	3300007004	Agricultural Soil	MNFTSKFIQAALALSFSKVEEIKNNRIKELLEIKSKIKEDPIVVENWFDNEINKIKNVTETNSSTDIESLINKIK*
Ga0079218_121469571	3300007004	Agricultural Soil	FALSFSNVEEIKNNRIKELLEIKSKIKEDPIVVENWFDNEINKIKNVTENHSSTDIESLINKIK*
Ga0105098_100881712	3300009081	Freshwater Sediment	MDFTSKFIQAAFAVSFSKVEEIKNNRIKELLKIKSKIKEDPLVVENWFDNEINKIRKVTENNSSSIDIESLINKIK*
Ga0111539_101066684	3300009094	Populus Rhizosphere	MNWASKFIQAALALSFSRVEEIKNNRIKELREMKSKIKNDPLVVENWFDNEINKIINVTENSDYSTDLESLIDKIK*
Ga0111539_102314012	3300009094	Populus Rhizosphere	MNFTSKFIETALGISFSKVEEVKNNRIKELLEIKSKIKEDPILVENWFDNQINKIRKVTENNSSFKDIESLINKIK*
Ga0111539_130778441	3300009094	Populus Rhizosphere	MNWASKFIQVALALSFSRVEEIKNNRIKELREMKSKIKNDPLVVENWFDNEINKIINVTENSEYSTDLESIIDKIK*
Ga0115027_108536511	3300009131	Wetland	MMNFTSKFIQAALALSSFKVEEIKNNRIKELLEIKSKIKDDPIAVENWFDNEINKIINVTENSASVDIESLINKIK*
Ga0105091_100855542	3300009146	Freshwater Sediment	MNFTSKFIETALGISFSKIEEVKNNRIKELLEIKSKIKENPILVENWFDNEINKIGKVTENNSSSIDIESLINKIK*
Ga0105091_101778181	3300009146	Freshwater Sediment	MNFTSKFIEAALAISFSKVEEIKNNRIKELLEIKSKVKEDPIVVENWFDNEINKILNVIENNNSSIDIESLINKIK*
Ga0105091_105125481	3300009146	Freshwater Sediment	MNFTSKFIEAALAISFSKVEEIKNNRIKELLEIKSKIKEDPIVVENWFDNEINKIRKVTENNSSSIDIESLINKIK*
Ga0111538_110247681	3300009156	Populus Rhizosphere	MDFTSKFIDTALGISFSKVEEVKNNRIKELLEIKSKIKEDPILVENWFDNQINKIRKVTENNSSFKDIESLINKIK*
Ga0105092_101046381	3300009157	Freshwater Sediment	MNFTSKFIETALGISFSKVEEVKNNRIKELLEIKSKIKEDPILVENWFENEINKIRKVTENNSSSIDIESLINKIK*
Ga0105092_106794441	3300009157	Freshwater Sediment	MNFTSKFIEAALAISFSKVEEIKNNRIKELLEIKSKIKEDPIVVENWFDNEINKILNVIENNNSSIDIESLINKIK*
Ga0105104_100133854	3300009168	Freshwater Sediment	MNFTSKFIQAALAISFSKVEEIKNNRIKELLEIKSKIKEDPIAVENWFDNEIYKISNVMENNPSSSTDIESLINKIK*
Ga0105104_100283774	3300009168	Freshwater Sediment	MNFTSKFIEAALAISFSKVEAIKNNRIKELFEIKSKIKEGPIVVENWFDIGINKILNVIENNNSSIDNESLINKIN*
Ga0105104_100609982	3300009168	Freshwater Sediment	MDFTSKFIQAAFAVSFSKVEEIKNNRIKELLEIKSKIKEDPLVVENWFDNEINKIITVTENNSSSIDIESLINKIK*
Ga0105104_101074932	3300009168	Freshwater Sediment	MNFTSKFIEAVLAISFSKVEEIKNNRIKELLEIKSKIKEDPIVVENWFDNEINKILNVIENNNSSIDIESLINKIK*
Ga0116591_10401031	3300009391	Sediment	MNFTSKFIQAALAISFSKVEEIKIKRIKELLEIKSKIKEDPVVVEHWFDNEINKISNVMENNSSSTDTESLINKIK*
Ga0105249_123906641	3300009553	Switchgrass Rhizosphere	GKMNFTSKFIESALAISFSKVEEVKNNRIKELLEIKSKIKDDPILVENWFDNQINKIRKVTENNSSFIDIESLINKIK*
Ga0126307_1000083515	3300009789	Serpentine Soil	MNFTSKFIQTAFALSFSKVEEIKNNRIKELLEIKSKIKEDPIIVETWFDNEINKIINVTENNSSIDIESLINKIK*
Ga0126307_100036993	3300009789	Serpentine Soil	MNFTSKFIETALAISFSKVEELKNNRIKELLEIKSKIKEDPILVENWFDNEINKIRKVTENNSSSINIESLINKIK*
Ga0126313_102421971	3300009840	Serpentine Soil	MNFTSKFIETALAISFSNLEEVKNNRIKELLEIKSKIKEDPILVENWFDNEINKIRKVTENNSSSINIESLINKIK*
Ga0126305_100024224	3300010036	Serpentine Soil	MNFTSKFIQAAFALSFSKVEEIKNNRIKELLEIKSKIKEDPIIVETWFDNEINKIINVTENNSSIDIESLINKIK*
Ga0126305_100941291	3300010036	Serpentine Soil	MNFTSKFIETALAISFSKVEELKNNRIKELLEIKSKIKEDPILVENWFDNEINKIRKVTENN
Ga0126304_100145654	3300010037	Serpentine Soil	MNFTSKFIETALAISFSKVEEVKNNRIKELLEIKSKIKEDPILVENWFDNEINKIRKVTENNSSSINIESLINKIK*
Ga0126309_102502071	3300010039	Serpentine Soil	MNFTSKFIQAALALSFSRVEEVKNNRIKELLEMKSKIKNDPIVVENWFDNEINKIINVTGNISDSSDIESIINKLK*
Ga0127502_105072041	3300011333	Soil	MMNFTSKFIQAALALSFSKVEEFKDNRIKELLEMKSKIKEDPVIVENWFDNEIKKIINVTENNSSIDIESLINKIK*
Ga0157285_100103861	3300012897	Soil	MMMNWTSKFIQAALSLSFFKIEEVKNNRIKELLDMKSKIKNDPLAVENWFDNEINKIINVTENSYHSADLESIIDKIK*
Ga0157286_100109562	3300012908	Soil	MNFTSKFIETALGISFSKVEEVKNNRIKELLEIKSKIKEDPILVENWFDNQINKIRKVTENNSSFKDIESVINKIK*
Ga0157301_100051832	3300012911	Soil	MMNWTSKFIQAALSLSFFKIEEVKNNRIKELLDMKSKIKNDPLAVENWFDNEINKIINVTENSYHSADLESIIDKIK*
Ga0163162_111529881	3300013306	Switchgrass Rhizosphere	KKEDVIRMNFTSKFIETALGISFSKVEEVKNNRIKELLEIKSKIKDDPILVENWFDNQINKIRKVTENNSSFIDIESLINKIK*
Ga0075322_10011253	3300014311	Natural And Restored Wetlands	MNFTSKFIQAALAVSFSKVEEIKNNRIKELLEIKSKIKEDPIVVENWFDNEIDKISNVMENNSSSTDIESLINKIK*
Ga0173483_105142191	3300015077	Soil	MDFTSKFIETALGISFSKVEEVKNNRIKELLEIKSKIKEDPILVENWFDNQINKIRKVTENNSSFKDIESLINKIK*
Ga0132258_103285862	3300015371	Arabidopsis Rhizosphere	MMNFTSKFIQAALALSSFKVEEIKNNRIKELLEIKSKIKDDPIAVENWFDNEINKIINVTENSASVDIESLINKI*
Ga0132255_1004465922	3300015374	Arabidopsis Rhizosphere	MDFTSKFIETALGISFSKVEEVKNNRIKELLEIKSKIKDDPILVENWFDNQINKIRKVTENNSSFIDIESLINKIK*
Ga0184611_10890042	3300018067	Groundwater Sediment	MNFTSKFIQAAFAVSFSKIEEIKNNRIKELLEIKLKIKEDPILVENWFDNEINKIRKVTENNSSSIDIESLINKIK
Ga0184624_100109993	3300018073	Groundwater Sediment	MNFTSKFIQAAFAISFSKVEEIKNNRIKELLEMKSKIKEDPITVENWFDNEINKISDVMENNSSSSTDIETLINKIK
Ga0184624_101224931	3300018073	Groundwater Sediment	MNFTSKFIETALAISFSKVEEVKNNRIKELLEIKSKIKEDPFLVENWFDNEINKIGKVTENNSSSIDIESLINKIK
Ga0190275_101448554	3300018432	Soil	MNFTSKFIEAALAISFSRVEEIKNNRIKELLEIRSKIKEDPIVVENWFANEINKILNVMENNSSNDIESLINKIK
Ga0190275_101747442	3300018432	Soil	MNFTSKFIQAALALSFSKVEEIKNNRIKELLEIKSKIKEDPVAVENWFDNEINKISNVMENNSSSTEIESLINKIQ
Ga0190275_109077742	3300018432	Soil	MNFTSKFIEAALAISFSKVEEIKNNRTKELLEIKSKIKEDPIAVENWFDNEIDKISNVMENKSSSTDIESLINKIK
Ga0190275_116681221	3300018432	Soil	MMNLTSKFIQAALALSFSRVEELKNNRIKELLEMKSKIKNDPLVVENWFDNEINKIINVTGNSSDSTDLESIINKIK
Ga0190269_104076971	3300018465	Soil	MTFPSKFIEAALAISFPKIEEIKNNRIKELIEIKSKIKEDPTIVENWFDNEINKIINVTETNSSINIESLIKNLK
Ga0190268_101093352	3300018466	Soil	MNFTSKFIQAALALSFSKVEEIKNNRIKELLEIKSKIKEDPIVVENWFDNEINKIKNMTENNSSTDIESLINKIK
Ga0190268_103547402	3300018466	Soil	MTLTSKFIEAALAISFPKIEEIKNNRIKELIEIKLKIKEDPTIVENWFDNEINKIINVTENNSSI
Ga0190268_113185991	3300018466	Soil	MTFPSKFIEAALAISFPKIEEIKNNRIKELIEIKSKIKEDPTIVENWFDNEINKIINVAENKSRITIESLIKNLK
Ga0190270_113704661	3300018469	Soil	MNFTSKFIEAALAISFSKVEEIKNNRIKELLEVKSKIKQDPIVVENWFDNEINKILNVIENNNSSIDIESLI
Ga0190270_114081962	3300018469	Soil	IQVAFAISFSKVEEIKNNRIKELLEMKSKIKEDPVVVENWFDNEIDKISNVMENNSSSSSTDIETLINKIK
Ga0190274_101037914	3300018476	Soil	MNFTSKFIEAALAISFSKVEEIKNNRIKELLEIRSKIKEDPIVVENWFDNEINKILNVMENNSSNDIESLINKIK
Ga0190274_103827522	3300018476	Soil	MNFTSKFIETALAISFSKVEEVKNNRIKELLEIKLKIKEDPTIVENWFDNEINKIINVTENNSSINIESLIKNLK
Ga0190271_103344333	3300018481	Soil	MNFTSKFIQAALAISFSKVEEIKNNRIKELLEIKSKIKEDPVAVENWFDNEINKISNVMENNSSSTDIESLINKIQ
Ga0190271_103745232	3300018481	Soil	MNFTSKFIEAALAISFSKVEEIKNNRIKELLEVKSKIKQDPIVVENWFDNEINKILNVIENNNSSIDIESLINKIN
Ga0190271_111024353	3300018481	Soil	FTSKFIEAALAISFSKVEEIKNNRIKELLEIRSKIKEDPIVVENWFANEINKILNVMENNSSNDIESLINKIK
Ga0173481_100021391	3300019356	Soil	MNFTSKFIETALGISFSKVEEVKNNRIKELLEIKSKIKEDPILVENWFDNQINKIRKVTENNSSFIDIESLINKIK
Ga0173481_100092302	3300019356	Soil	MMNWTSKFIQAALSLSFFKIEEVKNNRIKELLDMKSKIKNDPLAVENWFDNEINKIINVTENGYHSADLESIIDKIK
Ga0196962_100022533	3300024430	Soil	MNFTSKIIQAAFALSFSKVEEIKNNRINELLEIKSKIIEDPIVVENWFDNEINKIKNVTENNSSTDIESLINKIK
Ga0210061_10041492	3300025537	Natural And Restored Wetlands	MNFTSKFIQAALAVSFSKVEEIKNNRIKELLEIKSKIKEDPIVVENWFNNEIDKISNVMENNSSSTDIESLINKIK
Ga0210087_10247101	3300025559	Natural And Restored Wetlands	MNFTSKFIETALAISFSKVEEVKKNRIKELLEIKSKIKEDSILVENWFDNEINKIRKVTENNSSFIDIESLINKIK
Ga0210076_10051452	3300025567	Natural And Restored Wetlands	MNFTSKFIQAALAVSFSKVEEIKNNRIKELLEIKSKIKEDPIVVENWFDNEIDKISNVMENNSSSTDIESLINKIK
Ga0210076_10096071	3300025567	Natural And Restored Wetlands	VRRMNFTSKFIETALAISFSKVEEVKKNRIKELLEIKSKIKEDPIFVENWFDNEINKIRKVTENNSSFIDIESLINKIK
Ga0210143_10250102	3300025792	Natural And Restored Wetlands	MNFTSKFIETALAISFSKVEEVKKNRIKELLEIKSKIKEDPIFVENWFDNEINKIRKVTENNSSFIDIESLINKIK
Ga0207661_119605361	3300025944	Corn Rhizosphere	ISFSKVEEVKNNRIKELLEIKSKIKDDPILVENWFDNQINKIRKVTENNSSFIDIESLINKIK
Ga0207712_121080021	3300025961	Switchgrass Rhizosphere	GISFSKVEEVKNNRIKELLEIKSKIKDDPILVENWFDNQINKIRKVTENNSSFIDIESLINKIK
Ga0256867_100040265	3300026535	Soil	MNFNSKFIETALGISFSKMEEVKNNRIKELLEIKSKIREDPILVENWFDNEINKIGKVTENNSSSIDIESLINKIK
Ga0256867_100207985	3300026535	Soil	MKNWTSKFIQAALALSFSRVEEIKNNRIKELLEMKLKIKNDPIVVENWFDNEINKIINVTENSSYSTDLECIINKIK
Ga0214467_10145551	3300027075	Soil	MNFTSKFIEAALAISFSKVEEIKNNRIKELLEIKSKIREDPILVENWFDNEINKIINVTENSSYSTDLECIINKIK
Ga0209982_10517081	3300027552	Arabidopsis Thaliana Rhizosphere	MNFTSKFIEAALAISFSKVEEIKNNRIKELREIKSKIKEDPIVVENWFDNEINKILNLIENNNNSSSDIESLINKIK
Ga0209818_12717731	3300027637	Agricultural Soil	MNFTSKFIETALGISFSKIEEVKNNRIKELLEIKSKIKENPILVENWFDNEINKIRKVTENNSSSIDIESLINKIK
Ga0214468_10216223	3300027647	Soil	VNTNEELDLKIYSAALALSFSRVEEIKNNRIKELLEMKLKIKNDPIVVENWFDNEINKIINVTENSSYSTDLECIINKIK
Ga0209593_100365811	3300027743	Freshwater Sediment	MNFTSKFIQAALAISFSKVEEIKNNRIKELLEIKSKIKEDPIAVENWFDNEIYKISNVMENNPSSSTDIESLINKIK
Ga0209593_100759572	3300027743	Freshwater Sediment	MNSTLKFIQAAFAVSFSKVEEIKNNRIKELLEIKSKIKEDPLVVENWFDNEINKIITVTENNSSSIDIESLINKIK
Ga0207428_104840652	3300027907	Populus Rhizosphere	MMNWASKFIQAALALSFSRVEEIKNNRIKELREMKSKIKNDPLVVENWFDNEINKIINVTENSDYSTDLESLIDKIK
Ga0207428_105955151	3300027907	Populus Rhizosphere	MNFTSKFIETALGISFSKVEEVKNNRIKELLEIKSKIKDDPILVENWFDNQINKIRKVTENNSSFKDIESLINKIK
Ga0209382_102770722	3300027909	Populus Rhizosphere	MMNWASKFIQVALALSFSRVEEIKNNRIKELREMKSKIKNDPLVVENWFDNEINKIINVTENSEYSTDLESIIDKIK
Ga0209382_119997961	3300027909	Populus Rhizosphere	MNFTSKFIEAALAISFSKVEEIKNNRIKELLEIKSKIKEDPIVVETWFDNEINKILNVIQNNSSSNDIESLIKKIK
Ga0268265_122007941	3300028380	Switchgrass Rhizosphere	MNFTSKFIETALGISFSKVEEVKNNRIKELLEIKSKIKDDPILVENWFDNQINKIRKVTENNSSFIDIESLINKIK
Ga0302046_112339921	3300030620	Soil	MNFTSKFIETALGISFSKMEEVKNNRIKELLEIKSKIREDPILVENWFDNEINKIGKVTENNSSSIDIESLINKIK
Ga0310888_100552561	3300031538	Soil	MMNFTSKFIQAALALSSFKVEEIKNNRIKELLEIKSKIKDDPIAVENWFDNEINKITNVTENSTSVDIESLINKIK
Ga0310886_102080651	3300031562	Soil	MMNFTSKFIQAALALSSFKVEEIKNNRIKELLEMKSKIKDDPIAVENWFDNEINKIKNVTENSASGDIESLIDKIK
Ga0310886_102602071	3300031562	Soil	MMNFTSKFIQAALALSSFKVEEIKNNRIKELLEIKSKIKDDPIAVENWFDNEINKITNVTENSASVDIESLIN
Ga0310907_106918121	3300031847	Soil	MNFTSKFIEAALAISFSKVEAIKNNRIKELFEIKSKIKEDPIVVENWFDIGINKILNVIENNNSSIDNESLINKIN
Ga0310900_112809671	3300031908	Soil	MMNFTSKFIQAALALSSFKVEEIKNNRIKELLEIKSKIKDDPIAVENWFDNEINKIINVTENSTSVDIESL
Ga0307412_110726291	3300031911	Rhizosphere	MNFTSKFIETALAISFSKVEEVKNNRIKELLEIKSKIKEDPILVENWFDNEINKIRKVTENNSSSINIESLINKIK
Ga0310885_101341082	3300031943	Soil	QDRILMMNFTSKFIQAALALSSFKVEEIKNNRIKELLEIKSKIKDDPIAVENWFDNEINKITNVTENSTSVDIESLINKIK
Ga0310890_102035542	3300032075	Soil	MNFTSKFIQAAFAISFSKVEEIKNNRIKELLEMKSKIKEDPVVVENWFDNEINKISNVMENNSSSSTDIESLINKIK

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F079177

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences