3300009351: Microbial communities from sand-filter backwash in Singapore swimming pools - PR-1

Overview

Basic Information

• IMG/M Taxon OID: 3300009351
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0118565 | Gp0137169 | Ga0115924
• Sample Name: Microbial communities from sand-filter backwash in Singapore swimming pools - PR-1
• Sequencing Status: Permanent Draft
• Sequencing Center: Singapore Centre on Environmental Life Sciences Engineering (SCELSE)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 533577971
• Sequencing Scaffolds: 9
• Novel Protein Genes: 9
• Associated Families: 9

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium elkanii	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae	1
Not Available	3
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Mycobacteriaceae → Mycolicibacterium → Candidatus Mycolicibacterium alkanivorans	1
All Organisms → Viruses → Predicted Viral	1
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea → Stichotrichia → Sporadotrichida → Halteriidae → Halteria → Halteria grandinella	1
All Organisms → cellular organisms → Bacteria	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Microbial Communities In Swimming Pool Backwashes
• Type: Engineered
• Taxonomy: Engineered → Built Environment → Unclassified → Unclassified → Unclassified → Swimming Pool Sandfilter Backwash → Microbial Communities In Swimming Pool Backwashes

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Water (non-saline)

Location Information

• Location: Singapore
• Coordinates
  • Lat. (^o): 1.28967
  • Long. (^o): 103.85007
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003217	Metagenome / Metatranscriptome	500	Y
F009302	Metagenome / Metatranscriptome	320	Y
F020707	Metagenome / Metatranscriptome	222	Y
F024036	Metagenome / Metatranscriptome	207	Y
F026170	Metagenome	199	Y
F037197	Metagenome / Metatranscriptome	168	Y
F069722	Metagenome / Metatranscriptome	123	Y
F078294	Metagenome	116	Y
F083928	Metagenome	112	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0115924_1001669	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium elkanii	604
Ga0115924_1065342	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae	1107
Ga0115924_1191048	Not Available	522
Ga0115924_1428205	Not Available	526
Ga0115924_1431067	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Mycobacteriaceae → Mycolicibacterium → Candidatus Mycolicibacterium alkanivorans	770
Ga0115924_1442036	Not Available	534
Ga0115924_1589056	All Organisms → Viruses → Predicted Viral	2222
Ga0115924_1775064	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea → Stichotrichia → Sporadotrichida → Halteriidae → Halteria → Halteria grandinella	939
Ga0115924_1883110	All Organisms → cellular organisms → Bacteria	696

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0115924_1001669	Ga0115924_10016692	F020707	MCLIPGDFKHFAPPNAKQFRHLRKVSSIMRAKVLSIMRADPGRVTTP*
Ga0115924_1065342	Ga0115924_10653421	F069722	MRVRLTAELDPKANRERPDLKTGAAHEKALGHGSGAALQK*
Ga0115924_1191048	Ga0115924_11910481	F078294	ALVFIKNSGVNTLNYRFQEYNGTAWVDLGAQGSDYYNTLSPAEVRSFKVTSTYPQVQMVANASGGAFLDFSLDRYYNRPAGGAIPILAL*
Ga0115924_1428205	Ga0115924_14282051	F037197	LHFGNELQIPEETSASESASEINTGIQLNNYSGMTRQSLAMTGFAARW
Ga0115924_1431067	Ga0115924_14310672	F009302	VVCDECAGDGQLAYDQQATMWVPLGAAADWPAQDCIGISVLDCLQCDGTGMVRFDPAERTILTSSRP*
Ga0115924_1442036	Ga0115924_14420362	F003217	MSDEAYVVQKVEWYQLRSQDGSAFFVMVSTLPNGFVTAVPCDLTMARAEHHLMALAPNADEALAQSPRLALNRRRR
Ga0115924_1589056	Ga0115924_15890564	F083928	MKCIQFLNSLRPAIPMSAERPCEAMSTGELKRHVLQGAVLINGERVTPEEPIDFPVFRLVFFPKSDKRRTTIV*
Ga0115924_1775064	Ga0115924_17750643	F024036	LFFILLAFLPIIYN*YNVYNKHIPTIPMQNSLIQTFAFITFMLSLFCSASMLPCGRYYYEPEGGYVGNP*VKFSYQYIYLYLA*FVHHLDLIDHFIFQFFQTFIRKCLKLYKKNLTHVKKGLSRFVDFNTNQKNYNELVFTNTIYSINFKTRK*
Ga0115924_1883110	Ga0115924_18831102	F026170	RLVQNARMAKQRSDEEQKAVETILRALAHRLQRLRDEAAMQALRGETDPGVEKGLDMALRELNDLLPRRKRVR*