3300009305: Microbial communities from sediment of the River Tyne Estuary, UK ? Pasteurized_686d_2 SPAdes

Overview

Basic Information

• IMG/M Taxon OID: 3300009305
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0118143 | Gp0131538 | Ga0116592
• Sample Name: Microbial communities from sediment of the River Tyne Estuary, UK ? Pasteurized_686d_2 SPAdes
• Sequencing Status: Permanent Draft
• Sequencing Center: University of Liverpool
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 253607267
• Sequencing Scaffolds: 8
• Novel Protein Genes: 8
• Associated Families: 8

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Desulfallaceae	1
Not Available	2
All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon	5

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Anaerobic Oil Degrading Microbial Communities From River Tyne Estuarine Sediment
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Sediment → Unclassified → Unclassified → Sediment → Anaerobic Oil Degrading Microbial Communities From River Tyne Estuarine Sediment

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): estuarine biome → estuary → sediment
• Earth Microbiome Project Ontology (EMPO): Free-living → Saline → Sediment (saline)

Location Information

• Location: United Kingdom
• Coordinates
  • Lat. (^o): 54.9632021
  • Long. (^o): -1.6348029
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F021959	Metagenome / Metatranscriptome	216	Y
F032176	Metagenome / Metatranscriptome	180	Y
F035352	Metagenome / Metatranscriptome	172	Y
F036103	Metagenome / Metatranscriptome	170	Y
F045728	Metagenome / Metatranscriptome	152	Y
F056707	Metagenome	137	Y
F080568	Metagenome / Metatranscriptome	115	Y
F103182	Metagenome	101	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0116592_1020276	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Desulfallaceae	1464
Ga0116592_1027003	Not Available	1249
Ga0116592_1040213	All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon	1013
Ga0116592_1045228	All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon	953
Ga0116592_1048771	All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon	917
Ga0116592_1071681	All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon	754
Ga0116592_1114337	All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon	595
Ga0116592_1147619	Not Available	521

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0116592_1020276	Ga0116592_10202763	F021959	MKAGVGHLGTEDVARLQEQIKTLFGNVAELKDDMKKIKEDLSKRLPTWATALISLLTAAVGWLIK*
Ga0116592_1027003	Ga0116592_10270031	F080568	RYHFNGGTPADSAHWTTLSDAIVTAEKASLVNVNTIVQTVGYAAGSEVPVFTKTYSTAGTYAPGTGTQVPGDCAAVIRYSTAARTSKNHPIYLYNYVHGVWMTPGTPDTLLAANGTVLNTYASLWIGAGFSDGTTSYNRAGPNGATATGVLIEPLISHRDLPR*
Ga0116592_1040213	Ga0116592_10402132	F103182	VNGDKEVTKDHTKMTKIEVYKDYGVFSSQSKSKTKTRRPPKKLQQCVKCGRVGDAMTKHSLTGEHKPPFVWLCRQPCHDEVHKFGLKMTKEEKAALKRQPQCTIQFPPEVNIANPYTKLVEPESLEGGKFKQSFKLIDSKNEEQN*
Ga0116592_1045228	Ga0116592_10452282	F056707	MKQKEIELATVYMQMFLAGLALNFGANFHELEEITKRALFQVENPATQE*
Ga0116592_1048771	Ga0116592_10487711	F036103	LGIAICLVGAYLMAFGEPIIGVDHGGIATIVGITGIGLISTGNTLSFVRTKKEEP*
Ga0116592_1071681	Ga0116592_10716811	F035352	IKPVSKFQENFAGTPFMNKYETKPLLTADDEEYIMLLETSQEFEKLKTNKTSRENYGTAPEIVLRNHLLTRKLNLSLNPDVIIEGSKIKNGLLLLKNGVDPNLKSYLPDNVKIVIDVKNNSAGCKELKNGKLEDPNKAQRLRFNELEALTNVKNYAVVVLSETLLPPKGPFKWRFKEEAIGKQNCKVFTLVARQMYPSGGLYLKANIEKMLQNAQMKKTEEIEKLIKYLQNI*
Ga0116592_1114337	Ga0116592_11143372	F032176	GFDLMKMAPGKNPMAVGLWSFMTMSEKLAWVNDVVALVTFEALDPMWMESNLTIYEWK*
Ga0116592_1147619	Ga0116592_11476191	F045728	MQLASAPRESSGQNERPSMAVQAAPAPAGDPLLVSRFLPTRELTN