3300009228: Microbial communities of water from Amazon river, Brazil - RCM7

Overview

Basic Information

• IMG/M Taxon OID: 3300009228
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0117984 | Gp0126443 | Ga0103854
• Sample Name: Microbial communities of water from Amazon river, Brazil - RCM7
• Sequencing Status: Permanent Draft
• Sequencing Center: University of Georgia
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 138623500
• Sequencing Scaffolds: 43
• Novel Protein Genes: 49
• Associated Families: 48

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	5
All Organisms → cellular organisms → Bacteria	2
All Organisms → Viruses → Predicted Viral	2
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	2
All Organisms → cellular organisms → Eukaryota → Sar	1
Not Available	19
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae	1
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Myoviridae → Bellamyvirus → unclassified Bellamyvirus → Synechococcus phage SynMITS9220M01	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Enterobacterales → Enterobacteriaceae → Enterobacter → Enterobacter cloacae complex → Enterobacter hormaechei	2
All Organisms → cellular organisms → Bacteria → Spirochaetes → unclassified Spirochaetota → Spirochaetota bacterium	1
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → unclassified Terriglobia → Acidobacteriia bacterium	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae → Mesorhizobium	1
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Aokuangvirus → Aokuangvirus SCBWM1	1
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea → Stichotrichia → Urostylida → Pseudourostylidae → Pseudourostyla → Pseudourostyla cristata	1
All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Chrysophyceae → Chromulinales → Chromulinaceae → Ochromonas → unclassified Ochromonas → Ochromonas sp. CCMP1393	1
All Organisms → Viruses → unclassified bacterial viruses → Synechococcus phage S-EIVl	1
All Organisms → cellular organisms → Eukaryota → Cryptophyceae → Cryptomonadales → Cryptomonadaceae → Cryptomonas → Cryptomonas curvata	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Aquatic Microbial Communities From Amazon River, Brazil And North Atlantic Ocean
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Freshwater → Unclassified → Unclassified → River Water → Aquatic Microbial Communities From Amazon River, Brazil And North Atlantic Ocean

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): freshwater river biome → river → river water
• Earth Microbiome Project Ontology (EMPO): Free-living → Saline → Water (saline)

Location Information

• Location: Amazon river
• Coordinates
  • Lat. (^o): N/A
  • Long. (^o): N/A
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000203	Metagenome / Metatranscriptome	1619	Y
F000324	Metagenome / Metatranscriptome	1299	Y
F000344	Metagenome / Metatranscriptome	1257	Y
F000734	Metagenome / Metatranscriptome	915	Y
F000857	Metagenome / Metatranscriptome	858	Y
F001091	Metagenome / Metatranscriptome	781	Y
F001145	Metagenome / Metatranscriptome	765	Y
F001246	Metagenome / Metatranscriptome	737	Y
F001250	Metagenome / Metatranscriptome	737	Y
F001633	Metagenome / Metatranscriptome	660	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0103854_1000335	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	3493
Ga0103854_1000442	All Organisms → cellular organisms → Bacteria	3185
Ga0103854_1000492	All Organisms → Viruses → Predicted Viral	3057
Ga0103854_1001455	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	2016
Ga0103854_1002119	All Organisms → Viruses → Predicted Viral	1744
Ga0103854_1002523	All Organisms → cellular organisms → Eukaryota → Sar	1625
Ga0103854_1002832	Not Available	1555
Ga0103854_1003388	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae	1455
Ga0103854_1009025	Not Available	990
Ga0103854_1010270	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Myoviridae → Bellamyvirus → unclassified Bellamyvirus → Synechococcus phage SynMITS9220M01	939

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0103854_1000335	Ga0103854_10003353	F067750	MKLWESKTWLHDRYVVKKLGIIDMAREAGCTHMTIQRALIKYGILKGR*
Ga0103854_1000442	Ga0103854_10004422	F023290	MLFKIVEYLASNKIWLGLCGFGITIIPIMGIQYIHRKK*
Ga0103854_1000492	Ga0103854_10004923	F016800	MTSYANELQMLDAFTDYPIECYGDVAGKPAPIRKATILTYDRNKYCDVLVYQVDKDGDLRGTVVNFKLFYLYKNEASYDGGILFTYEELETLPWTEISSPHSI*
Ga0103854_1001455	Ga0103854_10014551	F003543	MADEQIVTNIVAKSDFSGLIRDLNQVQSALTQLQQTTANTNKTLANQIRVMNRQFGETLRSTGQFSTQFVSIGSDVEKFGKSLDSGKLKLNEFYRTWQTHAKTSGGLVRDLAKQQVQLQNAILQPVGKNAQGMMQFAVHVPKGLDISFAVR
Ga0103854_1002119	Ga0103854_10021193	F008357	HMAVQKNWEIDQNANFTIQLEYKDQDDNPIDLDGAFAKMQVRDTKGGSKLAFTLTSPNGGITIDAPNGKLTVRMTPTQTNKLFYPKSSYDLMLTDSNAVKTKLIEGFLTLSRSVTI*
Ga0103854_1002523	Ga0103854_10025231	F001145	MTWNFFSFLLTHEETEAFLQLNPNILETNLVNILILIGILIYGNKVSFSVSLENRQKEIIQTIENAQKDVVSASNYYYLAEKGFTQSLFWLQSWKMLYEKEKIDLVESKYKLVKTGLTETFATTETLIKNFENKSFIALQRYMILVTASKILRKFLYLSEDEQSKLIEVTISKLGGSKK*
Ga0103854_1002832	Ga0103854_10028326	F093630	MARIRCNACGTEIEVYQANKSKSCGCDNHTLLRLDRNGLPIITGNDLSLVTAIDGIGKPKERKVDMLPPMEYNKRIPRKLDFEVR*
Ga0103854_1003241	Ga0103854_10032412	F043395	RSSYVNPAIDGNFVGLVFGVKWSAQSDITLYRNSSEAPFNITTSAGILEKGGFKFQSYGDPADALPKLSKEFMSGEWNLIATIPYTGRLANGDKFELTECGFDETTNPYFAQMDMKGNYGQFAPNLVRNTGEGANLAVSNAVIVYPNPTMGDLYVDVSSSTVTRATFKVMDMTGKTVKVIQSDLIEGLNKITVNVGELANGMYMLKVADGKALNYAQSFNKQ*
Ga0103854_1003388	Ga0103854_10033882	F013645	MNPAFLFGTAFNIAYWHRKYHSGTICKGVNNAQASNALSGCEREENPK*
Ga0103854_1009025	Ga0103854_10090251	F002489	MQSEEHNIEDNLPMVNYIMLHRIYDMLTLIATELVGDDKVSKMINYHSEGYLLGPSPSYSPNEE*
Ga0103854_1010270	Ga0103854_10102701	F001246	MSVAVLVTFFKANESIILALLLALSEYLGANPKVKSNGIVSLVLIQVQSLLRSKGAKDLTP*
Ga0103854_1012034	Ga0103854_10120342	F050983	MSLSTNKIILAGAQSNTAGAYFLTTTITAVNTGNGTVIPAGVYVMFPQANVSVLAYNGSANATVMAANTGGVVISDGVNVFAKSSYASGDTVTLLATNGGQSVSGTFNS*
Ga0103854_1012181	Ga0103854_10121811	F009320	RFWLRGVPIALPHDAAQAGRYTLSEQSVREVFEDSYGLNCIPGAILNPVNDQGKVTNHKSYGINIMRLGMERGTFRINESCLAFLDEARNYAIDEQGRFSDPDDHIDSARIGILALIQGHGETVVSRANTFSSRRFEPIEGKAQRI*
Ga0103854_1012181	Ga0103854_10121812	F031403	MLNKQNIIVEYIEAPASNKGIVFQVAHEVYLKMVDYLRLTQAKNTFNRLSDYHYLNIAVSNSTEPIRGIDYIHPVVTPGVDYATAIITKCLMPNGKVDFQFDRFSESDSEQSNQATEMVKYMINSKNDSYQVIRDWAQDALLHK
Ga0103854_1012528	Ga0103854_10125281	F001633	LRFTSLLLFAQTGPMVGVGVRHALFPDGTRLGALAFAGGVLPDATLRGMRMSRAHGGPVPVVANRDLSSEASAPSSVAPCRERHAGRGADTPAILMVSRRHRCHGDGASLWPAVGPALRV
Ga0103854_1012856	Ga0103854_10128561	F049427	KEVADAQSAYNAASSAFAKCQSSLQAAQQNLPSLKRALVDFQNNLAAKTAERSRQHGLYLTRRDDWSAAISFLNDFVTQVNNKLAKYPSFADLGEKLLRHVSKLGRMAEAVEVFVALAQQPSELAAAPGAHNTYSYKAQVKTVGNLRNHLRTLLNKLTVDSKQNDTDEEKAQAAFERVKASLLKVIDQLNTDIARTNQQITNMTACVANEGKIMATANNKLHRNSKLKLLAGKTCTDFTREFITATQNRLQEISVIDQILVIMRKRFGQLPEDLVSYLNATRNGFR
Ga0103854_1012991	Ga0103854_10129911	F000344	MRPKHPHAAESGVGKHTARESERAQACATGKERVANAHSHKLAPEPLKAPG
Ga0103854_1013734	Ga0103854_10137341	F048301	RNYKESFKIGIPNEAELNSVEVVGNKLDKYLEVGYTKSSDRTLTFVPKLTKAVSYIWDISIDKALVKTAQIMINQNAASELQNKLMSPEIKAVMSKVDMLYSHSNNEALELAVAEIESLINAYTTRGVMDQSQVEEIEMSMQVVLENHPARKDYQSSEDFDNMIEEVAPMNDASQAF*
Ga0103854_1013807	Ga0103854_10138071	F059886	VIYACHSAIAVWRDERHQLPPAIPRSPGIIPAVLSVAFF
Ga0103854_1015751	Ga0103854_10157511	F069751	VVSGQRIAKSGGCPDASGEDADASHKRVFTWFASWRRKRQLKQAKRPHSKSSRREALDGPATRPITPLAVENSVGESAVTCVTPNADIGKESVASSHPPLCPCLV
Ga0103854_1015805	Ga0103854_10158051	F051294	RTKFHLRVRDPGAPAMAIQVNELRPTIARMKAAGTNVLSTNQEIVDFGGGTFTIFVEDPNGLNLEVFERNPPANAKGKQ*
Ga0103854_1017163	Ga0103854_10171631	F003494	MKSLLEFKSIAEEEKSDYSKFDVLVRAGLANKAQMQRIHKILDKMQEEKPVFNNADRAILQNMFNRMVDLVSNNKQNFYSSP*
Ga0103854_1018630	Ga0103854_10186301	F017300	MSKVLVTADQNGNVIGVSQNNPEYGYIRVEQTTVQINDQGWLRNVKRSALIKGKVVDLQEVGYREGTELPGKIVVVESLTPFNPENPDRDLKIAGSTGVVCRIDDQPIYRQTFYTQNPTACDEFITHTNREEIKDVMNAQRMMSLIGDVKTQEQNAEL*
Ga0103854_1018693	Ga0103854_10186931	F022892	VNKKINPIAHNIGVLYRKLPPYIVPNQLKILIPVGTPI
Ga0103854_1022514	Ga0103854_10225142	F042742	MQTDVLASVPLTTSGQFTAQNTNNIGRCRIKAVYIVPTGTAGSLVIKDGGSGGAVIATINTVASATQPTYLLMPGEGLVVQTGPYGAVTSLGSATIFYG*
Ga0103854_1024487	Ga0103854_10244871	F023855	VRSIVIQLYNYVIQYNGNLKTERYGCVQVVLLQSLMKLYQGFCFEEVQKCGGRDVSESS*
Ga0103854_1024773	Ga0103854_10247731	F001246	MSALIAFLVANKGTIVSILLIISEALGANPKVKSNGILSLILLQAQSALKKEEKK*
Ga0103854_1025966	Ga0103854_10259661	F037690	KIEFVGADIYEKIYDAKVKTHAMLKELESDYIAVEGAVLVRSPDAVIKLSYVYGVVIAELMSTGAKVITIAPTSWQAHIGNKNPTKAEKEKLKLENPGYAESWYKNKMRNIRKQRTVDYFNNKYSLGLDDFDVADSMGIAYYANEVLTKR*
Ga0103854_1026929	Ga0103854_10269291	F001250	MNWHIINQRDYIDGPFDTYEAAMEEACVLGKETRSVPRVTRRARDFYVYKPPYDRQEHWQPEYWICTKEAALAQGMSEDIFQQRLQEAW*
Ga0103854_1027552	Ga0103854_10275522	F018911	FGAIFLLDVVYTYYLRCVASNNVLGASFWSIACYLLGSLAVINYTSNHWLLIPAVTGAFCGTYVGMLIKRNSRV*
Ga0103854_1027822	Ga0103854_10278222	F000857	VEGALRKNNQLYNEVKSGTWSQSFSTPNIDYKVGAADGVRYVQYDQKNVEEVRARCKNMREFYKEHGTANPFFAGTFHAMDLPKCFAHEISSKWFNNRPWELIKRDKEDKILFYAIVNEYYSDFVCHPSGKIPLPYNPSIPTK*
Ga0103854_1030497	Ga0103854_10304971	F067394	LTNLNEIRVDFEGNFVNLEGFRPVIVKLLELMSNSSAVNKPLVRRKLIGIFRKISNQVEQRVDEIKAINERQNAIFGSIIESYKENLLRIKKLLERLTGENSHLQKRGLALKDSNVQARTITNVSKSIFKTRKTQCLNYAERVSRINVAIQRTRSIVAQIAEILSERFGALKSYFVQRDLSLLQLKVEQH*
Ga0103854_1032348	Ga0103854_10323483	F083877	MTEFYVIMLKRQDGKVYADLHKTNQVIYLTIEDAYEEWNNNEHFKEYYHIVKLIACLDEELKQFDK
Ga0103854_1033788	Ga0103854_10337881	F048237	DGQLQPVFPENGILLFYSPNGPSDSVMPAGGANAATPAFAYTYQLTGTPAVRPEYYIRERRVVRAEITVERVVNLVGLGATGLIGSGAMITDILS*
Ga0103854_1034234	Ga0103854_10342341	F085736	LLVFMYFIEHHFNPATVSYYFFER*NISELKEIRFYGVAPH*YFRPLMGLLVVSPSHYEGLM*LAL*LVLLAILPMTYNFYNSNNSYLPIIPMQSSLLQTFCFMLFMMSMYCASSMLPCGRYYYDPEGGYVGNP*VKFSYQYAYLYMA*IAHHLDIIEHYGYRYTQTYLRKTHTFYLICHRRFKKFQN*
Ga0103854_1034798	Ga0103854_10347981	F004097	MNSKTSKLTTLLSSASFLTLATSTGAIAQQVAQAQVAQAQAQAAEVPEQVLITGSLIHGAAAVGVPVTNLGTMDFAQTGSLTTADLFRTVPSALVSPGPVGTNANNNIGKQTRVNIR
Ga0103854_1035418	Ga0103854_10354181	F084268	MLFLLATPEYSNLQSNTTKVKVHLRSGVAEIFEQHQDLMGKVENNIIEIETNFENRLEKVLFVLQDAVFVVSNKGLDPNAEVKGTSIYVYAKRAKEVGSTVSLEELSKQYQQKQTELENETQKLTAPGVNPTDFA
Ga0103854_1035461	Ga0103854_10354612	F067096	MATYKSNAGNILQPGAQVNRLSAFNGEGVYGWPGIEAFELIGYVPI
Ga0103854_1037582	Ga0103854_10375821	F000734	VKTFREVGDVKNDTADLWTKGNLRVKRRDPWHRANALSKAAADPELSGEDA
Ga0103854_1037791	Ga0103854_10377912	F002502	MANSFTIPSVGSQFATQKSGVVGIVQEVVANANGSYRIKLDVAGQPRWTTAK*
Ga0103854_1038347	Ga0103854_10383471	F000203	GVRHALFPALALGAKLAASFPTLFSTASGVCGLVAGPSGGLRRWILSEAS*
Ga0103854_1038490	Ga0103854_10384902	F000324	MISEIQPIHSVSYDGALLQIYHAQKGQGLPSHSHTYAHLTMCHAGSCAVRKEGIQVIVTKENKPINLLPDGWHEIEALEDGTVFVNVFAEGKI*
Ga0103854_1040868	Ga0103854_10408681	F013736	TLMVCVSISLTSNLKRNQRNVVIDRSTTGVELTHVVRKNPTITSAHQYGLPSGSAGSSTITMEANNDDNGPGLGSGFVRNAAIANPSIYFHSKGGISVIKETPAHVGYRHETDYITSVNKSTGKVEQHVLNRRTPITGTIQEVKTIKTDTSRRLDLTNNQFGPVSTSMSH*
Ga0103854_1041405	Ga0103854_10414051	F012351	SVVGGTTSTASANIYFGAEHITNANVHESWLGDDQVSDMATGGNGPVDRNEGMYNSYASVKTYWSDTIFMDNLRGGDATGKATPGAAEVSWVDGTDSDSNPDHFSGLGNTKHTYTTSSFY
Ga0103854_1042225	Ga0103854_10422251	F052390	EYIGFWDDDLVTDIQSVNRALEIATEKNMKMFQLSTIAGSDSTHRILHQRQELKYSITNFNEGMGQFFHRTMIPILLEFFQYHEVKSGWGFDLILSAITKEKCGVIHEVSMYHPGKVSYYDKSEAFSEMYKILQDVYPKFMKGYHNEDVGAYGEPQTEYEITFRGI*
Ga0103854_1042688	Ga0103854_10426881	F009877	LLQNMSGAVVGKNVLRSRLINLLKLIARAVAQRRDLLEQQNEAANAIFEALLKSFNENITRINKLLERLSHEKNLLSKRGLALNDSLRRARRITKLSVKAATIKNRQCHQIKTRNARLHVSTQKIRNVVAQIEEILQERFGALKTFFVERKMRFAEKQ*
Ga0103854_1044190	Ga0103854_10441901	F014734	MAQQEQDAKGAFVEKLLFALLPLIIAGLGYLLSSVAQLNHQVTILESKVSLVVTQDNKQASNTGSELAREKLRQDLTEAIQKNRDSIQTNQQEIAVLKERIKVLEGRK*
Ga0103854_1044784	Ga0103854_10447841	F071976	VIVNGVSFYTTGAAIKRGVGDSVSVNTVVRQLFENMFNALGIASSMTVYDHKMKPTHYDVQISKV*
Ga0103854_1047014	Ga0103854_10470141	F001091	QELAKKLATQHNMPKAEKYDMELRHDGMIDVIGLVQDPTMDMNDFRGREMLFPKRWLTIGVLPPETEV*