Metagenome / Metatranscriptome Family F083877

Go to section:
Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

Select file to download:
Download

Overview

Basic Information
Family ID	F083877
Family Type	Metagenome / Metatranscriptome
Number of Sequences	112
Average Sequence Length	60 residues
Representative Sequence	MTEFYVIMLKRQDGKVYADLHKTNQVIYLTIEDAYEEWNNTEHYKEYYHIVKLIASLEDE
Number of Associated Samples	87
Number of Associated Scaffolds	112

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Viruses
% of genes with valid RBS motifs	73.21 %
% of genes near scaffold ends (potentially truncated)	19.64 %
% of genes from short scaffolds (< 2000 bps)	70.54 %
Associated GOLD sequencing projects	77
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.65

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


Click on a Sequence Logo column to get its information.
Powered by Skylign

Most Common Taxonomy
Group	Duplodnaviria (41.071 % of family members)
NCBI Taxonomy ID	2731341
Taxonomy	All Organisms → Viruses → Duplodnaviria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous (13.393 % of family members)
Environment Ontology (ENVO)	Unclassified (39.286 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Water (non-saline) (39.286 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

Powered by MSAViewer

Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

Powered by MSAViewer

AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

Powered by MSAViewer

Select alignment to view:

Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 18.18% β-sheet: 20.45% Coil/Unstructured: 61.36%
Feature Viewer

Powered by Feature Viewer

Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.65
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.65
Powered by PDBe Molstar

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 112 Family Scaffolds
PF00127	Copper-bind	1.79
PF11750	DUF3307	1.79
PF03796	DnaB_C	0.89
PF16363	GDP_Man_Dehyd	0.89
PF16724	T4-gp15_tss	0.89
PF07460	NUMOD3	0.89
PF08681	DUF1778	0.89
PF00149	Metallophos	0.89
PF01391	Collagen	0.89
PF07963	N_methyl	0.89
PF13385	Laminin_G_3	0.89
PF13469	Sulfotransfer_3	0.89
PF06206	CpeT	0.89
PF08722	Tn7_TnsA-like_N	0.89
PF13759	2OG-FeII_Oxy_5	0.89
PF05118	Asp_Arg_Hydrox	0.89

COG ID	Name	Functional Category	% Frequency in 112 Family Scaffolds
COG0305	Replicative DNA helicase	Replication, recombination and repair [L]	0.89
COG1066	DNA repair protein RadA/Sms, contains AAA+ ATPase domain	Replication, recombination and repair [L]	0.89
COG3555	Aspartyl/asparaginyl beta-hydroxylase, cupin superfamily	Posttranslational modification, protein turnover, chaperones [O]	0.89
COG4453	Uncharacterized conserved protein, DUF1778 family	Function unknown [S]	0.89

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	81.25 %
Unclassified	root	N/A	18.75 %

Name	Rank	Taxonomy	Distribution
Viruses	superkingdom	All Organisms → Viruses	78.57 %
Unclassified	root	N/A	18.75 %
cellular organisms	root	All Organisms → cellular organisms	2.68 %

Name	Rank	Taxonomy	Distribution
Duplodnaviria	clade	All Organisms → Viruses → Duplodnaviria	41.07 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	36.61 %
Unclassified	root	N/A	18.75 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	1.79 %
Archaea	superkingdom	All Organisms → cellular organisms → Archaea	0.89 %

Name	Rank	Taxonomy	Distribution
Heunggongvirae	kingdom	All Organisms → Viruses → Duplodnaviria → Heunggongvirae	41.07 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	36.61 %
Unclassified	root	N/A	18.75 %
FCB group	clade	All Organisms → cellular organisms → Bacteria → FCB group	0.89 %
Euryarchaeota	phylum	All Organisms → cellular organisms → Archaea → Euryarchaeota	0.89 %

Name	Rank	Taxonomy	Distribution
Uroviricota	phylum	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota	41.07 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	36.61 %
Unclassified	root	N/A	18.75 %
unclassified Euryarchaeota	no rank	All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota	0.89 %
Bacteroidetes/Chlorobi group	clade	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group	0.89 %

Name	Rank	Taxonomy	Distribution
Caudoviricetes	class	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	41.07 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	36.61 %
Unclassified	root	N/A	18.75 %
Euryarchaeota archaeon	species	All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon	0.89 %
Bacteroidetes	phylum	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	0.89 %

Name	Rank	Taxonomy	Distribution
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	36.61 %
Unclassified	root	N/A	18.75 %
environmental samples	no rank	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples	13.39 %
Caudovirales	order	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales	11.61 %
Kyanoviridae	family	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Kyanoviridae	7.14 %
unclassified Bacteroidetes	no rank	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes	0.89 %
Godonkavirus	genus	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Godonkavirus	0.89 %
Euryarchaeota archaeon	species	All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon	0.89 %

Name	Rank	Taxonomy	Distribution
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	36.61 %
Unclassified	root	N/A	18.75 %
uncultured Caudovirales phage	species	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	13.39 %
Myoviridae	family	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Myoviridae	11.61 %
unclassified Kyanoviridae	no rank	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Kyanoviridae → unclassified Kyanoviridae	5.36 %
Bacteroidetes bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium	0.89 %
Godonkavirus	genus	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Godonkavirus	0.89 %
Euryarchaeota archaeon	species	All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon	0.89 %

Name	Rank	Taxonomy	Distribution
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	36.61 %
Unclassified	root	N/A	18.75 %
uncultured Caudovirales phage	species	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	13.39 %
Nodensvirus	genus	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Myoviridae → Nodensvirus	8.93 %
Synechococcus phage S-SRM01	species	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Kyanoviridae → unclassified Kyanoviridae → Synechococcus phage S-SRM01	5.36 %
Neptunevirus	genus	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Myoviridae → Neptunevirus	0.89 %
Bacteroidetes bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium	0.89 %
Godonkavirus	genus	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Godonkavirus	0.89 %
Euryarchaeota archaeon	species	All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon	0.89 %

Name	Rank	Taxonomy	Distribution
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	36.61 %
Unclassified	root	N/A	18.75 %
uncultured Caudovirales phage	species	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	13.39 %
Synechococcus virus SPM2	species	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Myoviridae → Nodensvirus → Synechococcus virus SPM2	8.93 %
Synechococcus phage S-SRM01	species	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Kyanoviridae → unclassified Kyanoviridae → Synechococcus phage S-SRM01	5.36 %
Synechococcus virus SRIM50	species	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Myoviridae → Neptunevirus → Synechococcus virus SRIM50	0.89 %
Bacteroidetes bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium	0.89 %
Godonkavirus	genus	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Godonkavirus	0.89 %
Euryarchaeota archaeon	species	All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon	0.89 %

Visualization

Powered by ApexCharts

Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300001844\|RCM35_1004362	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium	660	Open in IMG/M
3300001848\|RCM47_1006210	All Organisms → Viruses → Predicted Viral	1668	Open in IMG/M
3300001968\|GOS2236_1055636	All Organisms → Viruses → Predicted Viral	2331	Open in IMG/M
3300001968\|GOS2236_1063924	All Organisms → Viruses → Predicted Viral	2213	Open in IMG/M
3300001968\|GOS2236_1065022	All Organisms → Viruses → Predicted Viral	1523	Open in IMG/M
3300001968\|GOS2236_1084634	All Organisms → Viruses → Predicted Viral	1409	Open in IMG/M
3300001968\|GOS2236_1090309	All Organisms → Viruses → Predicted Viral	2527	Open in IMG/M
3300002278\|B570J29590_102460	All Organisms → Viruses → Predicted Viral	1341	Open in IMG/M
3300002408\|B570J29032_109242381	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	651	Open in IMG/M
3300002408\|B570J29032_109405317	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Myoviridae → Nodensvirus → Synechococcus virus SPM2	741	Open in IMG/M
3300002835\|B570J40625_100240285	All Organisms → Viruses → Predicted Viral	1902	Open in IMG/M
3300002835\|B570J40625_100316633	All Organisms → Viruses → Predicted Viral	1569	Open in IMG/M
3300002835\|B570J40625_100494952	Not Available	1151	Open in IMG/M
3300003277\|JGI25908J49247_10168897	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	506	Open in IMG/M
3300003413\|JGI25922J50271_10005317	All Organisms → Viruses → Predicted Viral	3627	Open in IMG/M
3300003430\|JGI25921J50272_10016603	All Organisms → Viruses → Predicted Viral	2054	Open in IMG/M
3300005580\|Ga0049083_10097814	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	1017	Open in IMG/M
3300005582\|Ga0049080_10187778	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Kyanoviridae → unclassified Kyanoviridae → Synechococcus phage S-SRM01	685	Open in IMG/M
3300005662\|Ga0078894_11251245	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Myoviridae → Nodensvirus → Synechococcus virus SPM2	626	Open in IMG/M
3300005805\|Ga0079957_1031485	All Organisms → Viruses → Predicted Viral	3504	Open in IMG/M
3300006810\|Ga0070754_10244026	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Myoviridae	822	Open in IMG/M
3300007346\|Ga0070753_1022173	All Organisms → Viruses → Predicted Viral	2800	Open in IMG/M
3300007538\|Ga0099851_1015537	All Organisms → Viruses → Predicted Viral	3095	Open in IMG/M
3300007539\|Ga0099849_1031539	All Organisms → Viruses → Predicted Viral	2266	Open in IMG/M
3300007539\|Ga0099849_1121825	All Organisms → Viruses → Predicted Viral	1026	Open in IMG/M
3300007539\|Ga0099849_1235906	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Myoviridae → Nodensvirus → Synechococcus virus SPM2	677	Open in IMG/M
3300007539\|Ga0099849_1257555	Not Available	640	Open in IMG/M
3300007541\|Ga0099848_1131916	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	936	Open in IMG/M
3300007622\|Ga0102863_1106598	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Myoviridae → Nodensvirus → Synechococcus virus SPM2	824	Open in IMG/M
3300007960\|Ga0099850_1080725	All Organisms → Viruses → Predicted Viral	1357	Open in IMG/M
3300008996\|Ga0102831_1189657	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Kyanoviridae → unclassified Kyanoviridae → Synechococcus phage S-SRM01	680	Open in IMG/M
3300009009\|Ga0105105_10046386	All Organisms → Viruses → Predicted Viral	1947	Open in IMG/M
3300009082\|Ga0105099_10042161	All Organisms → Viruses → Predicted Viral	2383	Open in IMG/M
3300009154\|Ga0114963_10016186	Not Available	5013	Open in IMG/M
3300009159\|Ga0114978_10000415	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	35765	Open in IMG/M
3300009159\|Ga0114978_10014019	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	6073	Open in IMG/M
3300009159\|Ga0114978_10882110	Not Available	500	Open in IMG/M
3300009160\|Ga0114981_10478025	Not Available	667	Open in IMG/M
3300009168\|Ga0105104_10065452	All Organisms → Viruses → Predicted Viral	1967	Open in IMG/M
3300009221\|Ga0103849_1016106	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Kyanoviridae → unclassified Kyanoviridae → Synechococcus phage S-SRM01	923	Open in IMG/M
3300009223\|Ga0103850_1000497	All Organisms → Viruses → Predicted Viral	3165	Open in IMG/M
3300009228\|Ga0103854_1032348	Not Available	586	Open in IMG/M
3300009239\|Ga0103858_10155532	Not Available	591	Open in IMG/M
3300009385\|Ga0103852_1004606	All Organisms → Viruses → Predicted Viral	1190	Open in IMG/M
3300010296\|Ga0129348_1236478	Not Available	616	Open in IMG/M
3300010296\|Ga0129348_1245461	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Myoviridae → Nodensvirus → Synechococcus virus SPM2	603	Open in IMG/M
3300010297\|Ga0129345_1022121	All Organisms → Viruses → Predicted Viral	2477	Open in IMG/M
3300010300\|Ga0129351_1030844	All Organisms → Viruses → Predicted Viral	2219	Open in IMG/M
3300010354\|Ga0129333_10041398	All Organisms → Viruses → Predicted Viral	4333	Open in IMG/M
3300010354\|Ga0129333_10631049	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Kyanoviridae → unclassified Kyanoviridae → Synechococcus phage S-SRM01	927	Open in IMG/M
3300010354\|Ga0129333_10805323	Not Available	801	Open in IMG/M
3300010354\|Ga0129333_10927308	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	735	Open in IMG/M
3300010354\|Ga0129333_10965991	Not Available	718	Open in IMG/M
3300010354\|Ga0129333_11633227	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	525	Open in IMG/M
3300010370\|Ga0129336_10324413	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Kyanoviridae	852	Open in IMG/M
3300012504\|Ga0129347_1047397	All Organisms → Viruses → Predicted Viral	1146	Open in IMG/M
3300012965\|Ga0129346_1091486	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Myoviridae → Nodensvirus → Synechococcus virus SPM2	1173	Open in IMG/M
3300013372\|Ga0177922_10893038	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	931	Open in IMG/M
3300017723\|Ga0181362_1041645	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Godonkavirus	967	Open in IMG/M
3300017754\|Ga0181344_1227110	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	520	Open in IMG/M
3300017761\|Ga0181356_1252190	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	502	Open in IMG/M
3300017784\|Ga0181348_1167016	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Myoviridae → Nodensvirus → Synechococcus virus SPM2	812	Open in IMG/M
3300017785\|Ga0181355_1190366	Not Available	811	Open in IMG/M
3300019937\|Ga0194022_1005208	All Organisms → Viruses → Predicted Viral	1687	Open in IMG/M
3300020048\|Ga0207193_1732993	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	647	Open in IMG/M
3300020530\|Ga0208235_1000108	Not Available	22312	Open in IMG/M
3300020549\|Ga0207942_1001486	All Organisms → Viruses → Predicted Viral	4441	Open in IMG/M
3300020570\|Ga0208465_1015172	Not Available	1036	Open in IMG/M
3300021389\|Ga0213868_10282264	Not Available	958	Open in IMG/M
3300021425\|Ga0213866_10549562	Not Available	544	Open in IMG/M
3300021962\|Ga0222713_10589857	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Myoviridae → Neptunevirus → Synechococcus virus SRIM50	650	Open in IMG/M
3300022179\|Ga0181353_1034182	All Organisms → Viruses → Predicted Viral	1348	Open in IMG/M
3300022198\|Ga0196905_1001509	All Organisms → cellular organisms → Bacteria	8909	Open in IMG/M
3300022752\|Ga0214917_10000005	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Myoviridae	250224	Open in IMG/M
3300022752\|Ga0214917_10000859	All Organisms → Viruses	39541	Open in IMG/M
3300022752\|Ga0214917_10165203	All Organisms → Viruses → Predicted Viral	1145	Open in IMG/M
3300025674\|Ga0208162_1013277	All Organisms → Viruses → Predicted Viral	3370	Open in IMG/M
3300025674\|Ga0208162_1133017	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	700	Open in IMG/M
3300025687\|Ga0208019_1185528	Not Available	556	Open in IMG/M
3300026837\|Ga0209856_1000741	All Organisms → Viruses → Predicted Viral	1719	Open in IMG/M
3300027121\|Ga0255074_1001957	All Organisms → Viruses → Predicted Viral	3049	Open in IMG/M
3300027127\|Ga0255071_1002911	All Organisms → Viruses → Predicted Viral	3092	Open in IMG/M
3300027151\|Ga0255063_1012273	All Organisms → Viruses → Predicted Viral	1877	Open in IMG/M
3300027393\|Ga0209867_1009840	All Organisms → Viruses → Predicted Viral	1341	Open in IMG/M
3300027659\|Ga0208975_1013643	All Organisms → Viruses → Predicted Viral	2752	Open in IMG/M
3300027732\|Ga0209442_1128829	Not Available	993	Open in IMG/M
3300027741\|Ga0209085_1000233	Not Available	42575	Open in IMG/M
3300027743\|Ga0209593_10114273	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Myoviridae → Nodensvirus → Synechococcus virus SPM2	986	Open in IMG/M
3300027756\|Ga0209444_10171470	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	811	Open in IMG/M
3300027759\|Ga0209296_1010503	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Kyanoviridae	5580	Open in IMG/M
3300027762\|Ga0209288_10093279	All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon	938	Open in IMG/M
3300027769\|Ga0209770_10000449	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	22825	Open in IMG/M
3300027782\|Ga0209500_10000284	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	45670	Open in IMG/M
3300027917\|Ga0209536_103003095	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	543	Open in IMG/M
3300031519\|Ga0307488_10764412	Not Available	539	Open in IMG/M
3300031707\|Ga0315291_10910478	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	751	Open in IMG/M
3300031951\|Ga0315904_11092139	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Myoviridae → Nodensvirus → Synechococcus virus SPM2	623	Open in IMG/M
3300032046\|Ga0315289_10611639	All Organisms → Viruses → Predicted Viral	1013	Open in IMG/M
3300032156\|Ga0315295_10789521	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Kyanoviridae → unclassified Kyanoviridae → Synechococcus phage S-SRM01	954	Open in IMG/M
3300033981\|Ga0334982_0408536	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	616	Open in IMG/M
3300034062\|Ga0334995_0119244	All Organisms → Viruses → Predicted Viral	1959	Open in IMG/M
3300034062\|Ga0334995_0683272	Not Available	581	Open in IMG/M
3300034072\|Ga0310127_249703	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Myoviridae → Nodensvirus → Synechococcus virus SPM2	631	Open in IMG/M
3300034082\|Ga0335020_0000056	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	91892	Open in IMG/M
3300034082\|Ga0335020_0369427	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	694	Open in IMG/M
3300034082\|Ga0335020_0510605	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	569	Open in IMG/M
3300034092\|Ga0335010_0582333	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	571	Open in IMG/M
3300034104\|Ga0335031_0322096	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	998	Open in IMG/M
3300034106\|Ga0335036_0000008	Not Available	208660	Open in IMG/M
3300034106\|Ga0335036_0741748	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Kyanoviridae → unclassified Kyanoviridae → Synechococcus phage S-SRM01	576	Open in IMG/M
3300034121\|Ga0335058_0114489	All Organisms → Viruses → Predicted Viral	1578	Open in IMG/M
3300034356\|Ga0335048_0078561	All Organisms → Viruses → Predicted Viral	2037	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	100.00%

Habitat	Taxonomy	Distribution
Aquatic	Environmental → Aquatic	97.32%
Terrestrial	Environmental → Terrestrial	2.68%

Habitat	Taxonomy	Distribution
Freshwater	Environmental → Aquatic → Freshwater	63.39%
Marine	Environmental → Aquatic → Marine	33.93%
Soil	Environmental → Terrestrial → Soil	1.79%
Deep Subsurface	Environmental → Terrestrial → Deep Subsurface	0.89%

Habitat	Taxonomy	Distribution
Lake	Environmental → Aquatic → Freshwater → Lake	25.89%
Coastal	Environmental → Aquatic → Marine → Coastal	25.89%
Lentic	Environmental → Aquatic → Freshwater → Lentic	22.32%
Intertidal Zone	Environmental → Aquatic → Marine → Intertidal Zone	6.25%
Unclassified	Environmental → Aquatic → Freshwater → Unclassified	5.36%
Sediment	Environmental → Aquatic → Freshwater → Sediment	4.46%
River	Environmental → Aquatic → Freshwater → River	3.57%
Lotic	Environmental → Aquatic → Freshwater → Lotic	1.79%
Sand	Environmental → Terrestrial → Soil → Sand	1.79%
Oceanic	Environmental → Aquatic → Marine → Oceanic	0.89%
Unclassified	Environmental → Aquatic → Marine → Unclassified	0.89%
Unclassified	Environmental → Terrestrial → Deep Subsurface → Unclassified	0.89%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Aquatic → Marine → Coastal → Unclassified	25.89%
Unclassified	Environmental → Aquatic → Freshwater → Lake → Unclassified	22.32%
Unclassified	Environmental → Aquatic → Freshwater → Lentic → Unclassified	16.07%
Epilimnion	Environmental → Aquatic → Freshwater → Lentic → Epilimnion	6.25%
Unclassified	Environmental → Aquatic → Freshwater → Unclassified → Unclassified	5.36%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	4.46%
Unclassified	Environmental → Aquatic → Marine → Intertidal Zone → Unclassified	4.46%
Sediment	Environmental → Aquatic → Freshwater → Lake → Sediment	3.57%
Unclassified	Environmental → Aquatic → Freshwater → River → Unclassified	3.57%
Unclassified	Environmental → Aquatic → Freshwater → Lotic → Unclassified	1.79%
Estuary	Environmental → Aquatic → Marine → Intertidal Zone → Estuary	1.79%
Unclassified	Environmental → Terrestrial → Soil → Sand → Unclassified	1.79%
Sediment	Environmental → Aquatic → Marine → Oceanic → Sediment	0.89%
Unclassified	Environmental → Aquatic → Marine → Unclassified → Unclassified	0.89%
Unclassified	Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified	0.89%

Habitat	Taxonomy	Distribution
Freshwater	Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater	13.39%
Aqueous	Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous	13.39%
Freshwater Lake	Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake	11.61%
Freshwater To Marine Saline Gradient	Environmental → Aquatic → Marine → Coastal → Unclassified → Freshwater To Marine Saline Gradient	9.82%
Freshwater Lake	Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake	7.14%
Freshwater	Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater	6.25%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Freshwater Sediment	4.46%
River Water	Environmental → Aquatic → Freshwater → Unclassified → Unclassified → River Water	4.46%
Marine	Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine	4.46%
Freshwater Lentic	Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lentic	2.68%
Sediment	Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment	2.68%
Freshwater	Environmental → Aquatic → Freshwater → River → Unclassified → Freshwater	2.68%
Freshwater	Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater	1.79%
Marine Plankton	Environmental → Aquatic → Freshwater → Lotic → Unclassified → Marine Plankton	1.79%
Seawater	Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater	1.79%
Estuarine	Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine	1.79%
Sand	Environmental → Terrestrial → Soil → Sand → Unclassified → Sand	1.79%
Freshwater	Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater	0.89%
Lake	Environmental → Aquatic → Freshwater → Lake → Unclassified → Lake	0.89%
Freshwater Lake Sediment	Environmental → Aquatic → Freshwater → Lake → Sediment → Freshwater Lake Sediment	0.89%
Freshwater	Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater	0.89%
Freshwater	Environmental → Aquatic → Freshwater → River → Unclassified → Freshwater	0.89%
Marine Sediment	Environmental → Aquatic → Marine → Oceanic → Sediment → Marine Sediment	0.89%
Sackhole Brine	Environmental → Aquatic → Marine → Coastal → Unclassified → Sackhole Brine	0.89%
Estuarine Water	Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water	0.89%
Fracking Water	Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Fracking Water	0.89%

Visualization

Powered by ApexCharts

Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300001844	Marine plankton microbial communities from the Amazon River plume, Atlantic Ocean - RCM35, ROCA_DNA220_0.2um_bLM_C_3a	Environmental	Open in IMG/M
3300001848	Marine plankton microbial communities from the Amazon River plume, Atlantic Ocean - RCM47, ROCA_DNA265_0.2um_TAP-S_3a	Environmental	Open in IMG/M
3300001968	Marine microbial communities from Lake Gatun, Panama - GS020	Environmental	Open in IMG/M
3300002278	Freshwater microbial communities from Lake Mendota, WI - 22OCT2012 deep hole epilimnion	Environmental	Open in IMG/M
3300002408	Freshwater microbial communities from Lake Mendota, WI, sample - 15JUL2010 deep hole epilimnion (Lake Mendota Combined assembly, ASSEMBLY_DATE=20140123)	Environmental	Open in IMG/M
3300002835	Freshwater microbial communities from Lake Mendota, WI - (Lake Mendota Combined Ray assembly, ASSEMBLY_DATE=20140605)	Environmental	Open in IMG/M
3300003277	Freshwater lake microbial communities from Lake Michigan, USA - Sp13.BD.MM15.SD	Environmental	Open in IMG/M
3300003413	Freshwater lake microbial communities from Lake Michigan, USA - Su13.BD.MLB.DD	Environmental	Open in IMG/M
3300003430	Freshwater lake microbial communities from Lake Michigan, USA - Su13.BD.MLB.SD	Environmental	Open in IMG/M
3300005580	Freshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG MI27MSRF	Environmental	Open in IMG/M
3300005582	Freshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG ER15MSRF	Environmental	Open in IMG/M
3300005662	Freshwater lake microbial communities from Lake Michigan, USA - Su13.BD.MLB.SD (version 4)	Environmental	Open in IMG/M
3300005805	Microbial and algae communities from Cheney Reservoir in Wichita, Kansas, USA	Environmental	Open in IMG/M
3300006810	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Sep_01	Environmental	Open in IMG/M
3300007346	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Aug_31	Environmental	Open in IMG/M
3300007538	Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1508_2 Viral MetaG	Environmental	Open in IMG/M
3300007539	Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1508_1M Viral MetaG	Environmental	Open in IMG/M
3300007541	Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1508_1S Viral MetaG	Environmental	Open in IMG/M
3300007622	Estuarine microbial communities from the Columbia River estuary - metaG 1449A-02	Environmental	Open in IMG/M
3300007960	Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1508_1D Viral MetaG	Environmental	Open in IMG/M
3300008996	Estuarine microbial communities from the Columbia River estuary - Freshwater metaG S.747	Environmental	Open in IMG/M
3300009009	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P8 Core (1) Depth 1-3cm September2015	Environmental	Open in IMG/M
3300009082	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P8 Core (1) Depth 1-3cm May2015	Environmental	Open in IMG/M
3300009154	Freshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_131016_EF_MetaG	Environmental	Open in IMG/M
3300009159	Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140212_EF_MetaG	Environmental	Open in IMG/M
3300009160	Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140806_MF_MetaG	Environmental	Open in IMG/M
3300009168	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P7 Core (6) Depth 19-21cm September2015	Environmental	Open in IMG/M
3300009221	Microbial communities of water from Amazon river, Brazil - RCM2	Environmental	Open in IMG/M
3300009223	Microbial communities of water from Amazon river, Brazil - RCM3	Environmental	Open in IMG/M
3300009228	Microbial communities of water from Amazon river, Brazil - RCM7	Environmental	Open in IMG/M
3300009239	Microbial communities of water from Amazon river, Brazil - RCM11	Environmental	Open in IMG/M
3300009385	Microbial communities of water from Amazon river, Brazil - RCM5	Environmental	Open in IMG/M
3300010296	Freshwater to marine salinity gradient microbial communities from Chesapeake Bay, USA - CPBay_Sum_27_0.8_DNA	Environmental	Open in IMG/M
3300010297	Freshwater to marine salinity gradient microbial communities from Chesapeake Bay, USA - CPBay_Sum_20_0.8_DNA	Environmental	Open in IMG/M
3300010300	Freshwater to marine salinity gradient microbial communities from Chesapeake Bay, USA - CPBay_Sum_27_0.2_DNA	Environmental	Open in IMG/M
3300010354	Freshwater to marine salinity gradient microbial communities from Chesapeake Bay, USA - CPBay_Sum_0.6_0.8_DNA	Environmental	Open in IMG/M
3300010370	Freshwater to marine salinity gradient microbial communities from Chesapeake Bay, USA - CPBay_Sum_0.6_0.2_DNA	Environmental	Open in IMG/M
3300012504	Freshwater to marine salinity gradient microbial communities from Chesapeake Bay, USA - CPBay_Sum_20_0.8_RNA2 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300012965	Freshwater to marine salinity gradient microbial communities from Chesapeake Bay, USA - CPBay_Sum_20_0.8_RNA1 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300013372	Freshwater microbial communities from Lake Erie, Ontario, Canada. Combined Assembly of 10 SPs	Environmental	Open in IMG/M
3300017723	Freshwater viral communities from Lake Michigan, USA - Su13.ND.MM110.S.N	Environmental	Open in IMG/M
3300017754	Freshwater viral communities from Lake Michigan, USA - Su13.VD.MLB.D.D	Environmental	Open in IMG/M
3300017761	Freshwater viral communities from Lake Michigan, USA - Fa13.VD.MM110.S.N	Environmental	Open in IMG/M
3300017784	Freshwater viral communities from Lake Michigan, USA - Su13.VD.MM110.D.N	Environmental	Open in IMG/M
3300017785	Freshwater viral communities from Lake Michigan, USA - Fa13.VD.MM15.D.N	Environmental	Open in IMG/M
3300019937	Freshwater microbial communities from the Broadkill River, Lewes, Delaware, United States ? IW29Aug16_MG	Environmental	Open in IMG/M
3300020048	Microbial communities from Manganika and McQuade lakes, Minnesota, USA Combined Assembly of Gp0225457, Gp0225456, Gp0225455, Gp0225454, Gp0225453, Gp0224915	Environmental	Open in IMG/M
3300020530	Freshwater microbial communities from Lake Mendota, WI - 22OCT2012 deep hole epilimnion (SPAdes)	Environmental	Open in IMG/M
3300020549	Freshwater microbial communities from Lake Mendota, WI - 12OCT2012 deep hole epilimnion (SPAdes)	Environmental	Open in IMG/M
3300020570	Freshwater microbial communities from Lake Mendota, WI - 31AUG2010 deep hole epilimnion (SPAdes)	Environmental	Open in IMG/M
3300021389	Coastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO127	Environmental	Open in IMG/M
3300021425	Coastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO284	Environmental	Open in IMG/M
3300021962	Estuarine water microbial communities from San Francisco Bay, California, United States - C33_649D	Environmental	Open in IMG/M
3300022179	Freshwater viral communities from Lake Michigan, USA - Fa13.VD.MLB.D.N	Environmental	Open in IMG/M
3300022198	Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1508_1S Viral MetaG (v3)	Environmental	Open in IMG/M
3300022752	Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL_1208_BB	Environmental	Open in IMG/M
3300025674	Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1508_1M Viral MetaG (SPAdes)	Environmental	Open in IMG/M
3300025687	Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1508_1D Viral MetaG (SPAdes)	Environmental	Open in IMG/M
3300026837	Groundwater microbial communities from the Columbia River, Washington, USA, for microbe roles in carbon and contaminant biogeochemistry - GW-RW metaG T2_25-Nov-14 (SPAdes)	Environmental	Open in IMG/M
3300027121	Freshwater microbial communities from Columbia River, Oregon, United States - Colum_Yuk_RepC_8h	Environmental	Open in IMG/M
3300027127	Freshwater microbial communities from Columbia River, Oregon, United States - Colum_Miss_RepC_8h	Environmental	Open in IMG/M
3300027151	Freshwater microbial communities from Columbia River, Oregon, United States - Colum_Cont_RepA_0h	Environmental	Open in IMG/M
3300027393	Groundwater microbial communities from the Columbia River, Washington, USA, for microbe roles in carbon and contaminant biogeochemistry - GW-RW metaG T4_4-Nov-14 (SPAdes)	Environmental	Open in IMG/M
3300027659	Freshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG ER78MSRF (SPAdes)	Environmental	Open in IMG/M
3300027732	Freshwater lake microbial communities from Lake Michigan, USA - Sp13.BD.MM110.DD (SPAdes)	Environmental	Open in IMG/M
3300027741	Freshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_131016_EF_MetaG (SPAdes)	Environmental	Open in IMG/M
3300027743	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P7 Core (6) Depth 19-21cm September2015 (SPAdes)	Environmental	Open in IMG/M
3300027756	Freshwater lake microbial communities from Lake Michigan, USA - Fa13.BD.MM15.DN (SPAdes)	Environmental	Open in IMG/M
3300027759	Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130206_EF_MetaG (SPAdes)	Environmental	Open in IMG/M
3300027762	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P8 Core (1) Depth 1-3cm September2015 (SPAdes)	Environmental	Open in IMG/M
3300027769	Freshwater lake microbial communities from Lake Michigan, USA - Su13.BD.MLB.DD (SPAdes)	Environmental	Open in IMG/M
3300027782	Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140212_EF_MetaG (SPAdes)	Environmental	Open in IMG/M
3300027917	Marine sediment microbial communities from White Oak River estuary, North Carolina - WOR-2-8_12 (SPAdes)	Environmental	Open in IMG/M
3300031519	Sea-ice brine microbial communities from Beaufort Sea near Barrow, Alaska, United States - SB 0.2	Environmental	Open in IMG/M
3300031707	Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G12_20	Environmental	Open in IMG/M
3300031951	Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 12 MA120	Environmental	Open in IMG/M
3300032046	Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G11_40	Environmental	Open in IMG/M
3300032156	Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G14_0	Environmental	Open in IMG/M
3300033981	Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME24Aug2014-rr0011	Environmental	Open in IMG/M
3300034062	Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME27Jul2012-rr0045	Environmental	Open in IMG/M
3300034072	Fracking water microbial communities from deep shales in Oklahoma, United States - MC-3-A	Environmental	Open in IMG/M
3300034082	Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME05Jun2015-rr0088	Environmental	Open in IMG/M
3300034092	Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME03Aug2012-rr0069	Environmental	Open in IMG/M
3300034104	Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME02Aug2005-rr0120	Environmental	Open in IMG/M
3300034106	Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME23Aug2013-rr0131	Environmental	Open in IMG/M
3300034121	Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME19May2015-rr0174	Environmental	Open in IMG/M
3300034356	Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME17Jun2014-rr0152	Environmental	Open in IMG/M

Geographical Distribution

Zoom:	Powered by OpenStreetMap

Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
RCM35_10043621	3300001844	Marine Plankton	MTEFYVIMLKRQDGKVYADLHKTNQVIYLTIEDAYEEWNNTEHFKENYHIVKLIAC
RCM47_10062108	3300001848	Marine Plankton	MTIFYTIMLKRQDGKVYADLHKTDQFIYLTEEDAYEELNNKEHFKEYYHIVKLIAC
GOS2236_10556362	3300001968	Marine	MTEFYVIMLKRQDGKVYADLHKTNQVIYLTIEDAYEELNNTEHFKEYYHIVKLIACLEEELK*
GOS2236_10639246	3300001968	Marine	MTEFYVIMLKRQDGKVYADLHKTNQVIYLTIEDAYEEWNNNEHFKEYYHIVKLIACLEAL
GOS2236_10650226	3300001968	Marine	MTEFYVIMLKRQDGKVYADLHKTNQVIYLTIEDAYEEWNNNEHFKEYYHIVKLIACLEEELK*
GOS2236_10846344	3300001968	Marine	MTEFYVIMLKRQDGKVYADLHKTNQVIYLTIEDAYEELNNTEHFKENYHIVKLIACLDEELK*
GOS2236_10903096	3300001968	Marine	MTEFYVIMLKRQDGKTYADLHKTNQVIYLTIEDAYEELNNTEHFKEYYHIVKLIACLEEELK*
B570J29590_1024606	3300002278	Freshwater	MTEFYVIMLKRQDGKVYADLHKTXQXIYLTIEDAYEEWNNTEHYKEYYHIVKLIASCEDEE*
B570J29032_1092423811	3300002408	Freshwater	MTEFYVIMLKRQDGKVYADLHKTTQDIYLTIEDAYEEWNNTEHYKEYYHIVKLIA
B570J29032_1094053171	3300002408	Freshwater	MTEFYVIMLKRQDGKVYADLHKTNQVIYLTIEDAYEEWNNTEHYKEYYHIVKLIA
B570J40625_1002402855	3300002835	Freshwater	MTEFYVIMLKRQDGKVYADLHKTNQVIYLTIEDAYEEWNNTEHYKEYYHIVKLIASLEDEE*
B570J40625_1003166332	3300002835	Freshwater	MTEFYVIMLKRQDGKVYADLHKTTQDIYLTIEDAYEEWNNTEHYKEYYHIVKLIASCEDEE*
B570J40625_1004949525	3300002835	Freshwater	MTEFYVIMQKRRDNKVYADLHKTNQRIYLTIEDAFDELNSSEHYRDYCHIVKLIACLDEELEKL*
JGI25908J49247_101688971	3300003277	Freshwater Lake	MTEFYVIMQKRQDGKVYADLHKTNQVIYLTIEDAYEEWNNTEHYKEYYHIVKLIASLEDEE*
JGI25922J50271_100053174	3300003413	Freshwater Lake	MTEFYVIMLKRQDGKVYADLHKTNQHIYLTIEDAYEEWNNTEHYKEYYHIVKLIASCEDKE*
JGI25921J50272_100166036	3300003430	Freshwater Lake	MTEFYVIMLKRQDGKVYADLHKTNQVIYLTIEDAYEEWNNTEHYKEYYHIVKLIASCEDEE*
Ga0049083_100978141	3300005580	Freshwater Lentic	MTEFYVIMLKRQDGKVYADLHKTNEVIYLTIEDAYEEWNNTEHYKEYYHIVKLIACLPET
Ga0049080_101877782	3300005582	Freshwater Lentic	MTEFYVIMLKRQDGKVYADLHKTNQVIYLTIEDAYEELNNTEHFKENYHIVKLIACLDDLKK*
Ga0078894_112512452	3300005662	Freshwater Lake	MTEFYVIMLKRQDGKVYADLHKTNQHIYLTIEDAEDEFNKSEHYKEYCHIVKLIACLEDEE*
Ga0079957_10314851	3300005805	Lake	MTEFYVIMVKRQDGKVYADLHKTTQQIYLTIEDAYEEWNNTEHYKQYYHIVKLIASLEDEE*
Ga0070754_102440261	3300006810	Aqueous	MTEFYTIMHKRQDGKVYADLHKTNQIIYLTKEDAEKDLNYYKKYYHIVKLIASLENEE*
Ga0070753_10221738	3300007346	Aqueous	MHKRQDGKVYADLHKTNQIIYLTKEDAEKDLNYYKKYYHIVKLIASLENEE*
Ga0099851_10155377	3300007538	Aqueous	MTEFYVIMLKRQDGKVYADLHKTNQHIYLTIEDAEDEFNKSEHYKQYYHIVKLIASLENEE*
Ga0099849_10315396	3300007539	Aqueous	MHKRQDGKVYADLHKTNQIIYLTKEDAEEDLNYDDHYKKYYHVVKLIASLENEK*
Ga0099849_11218252	3300007539	Aqueous	MTEFYVIMQKRQDGKIYADLHKTNQIIYLTKEDAEEDLKHDVDTSYRHIVRLIACLEEELND*
Ga0099849_12359063	3300007539	Aqueous	MTEFYMIMLKRQDGKVYADLHKTNQVIYLTIEDAYEEWNNTEHYKEYYHIVKLIASLEDEE*
Ga0099849_12575552	3300007539	Aqueous	MTEFYTIMLKRRDGKVYADLHKTNQHIYLTIEDAYEEWNNTEHYKQYYHIVKLIASLEDEE*
Ga0099848_11319161	3300007541	Aqueous	VGGGEMTEFYVIMLKRQDGKVYADLHKTNQVIYLTIEDAYEELNNTEHFKENYHIVKLIACLDDLKK*
Ga0102863_11065983	3300007622	Estuarine	MTEFYVIMLKRQDGKVYADLHKTNEVIYLTIEDAYEEWNNTEHYKEYYHIVKLIASLEDEK*
Ga0099850_10807252	3300007960	Aqueous	MLKRKDNKTYADLHKTNQQIYLTIEDAEEAFNSNEHFQKYYHIVKLIACLEEELNER*
Ga0102831_11896571	3300008996	Estuarine	MTEFYVIMLKRQDGKVYADLHKTNEVIYLTIEDAYEEWNNTEHYKEYNHIVKLIACMPETLEGLAQ*
Ga0105105_100463866	3300009009	Freshwater Sediment	MTEFYVIMLKRRDGKVYADLHKTNQVIYLTIEDAYEEWNNSEHYKEYYHIVKLIASLEDEE*
Ga0105099_100421612	3300009082	Freshwater Sediment	MTEFYVIMLKRQDGKVYADLHKTNQVIYLTIEDAYEEWNNSEHYKEYYHIVKLIASLEDEE*
Ga0114963_100161869	3300009154	Freshwater Lake	MTNKVGHEFWVIMQKRRDGEVYADLHKTNQYIYLTYEDALVVFHNSEHYKEYYDIVKMIATLDEEE*
Ga0114978_1000041551	3300009159	Freshwater Lake	MTTFYVIMQKRRDGEVYADLHKTNEIMYLTYEDAVEHFNNSEHYKEYYHIVKMIATLDEEI*
Ga0114978_1001401920	3300009159	Freshwater Lake	MTEFYVIMLKRQDGKVYADLHKTTQDIYLTIEDAYEEWNNTEHYKEYYHIVKLIASLEDDE*
Ga0114978_108821103	3300009159	Freshwater Lake	MTEFYVIMVKRQDGKVYADLHKTNEVIYGTIEDAYEEWNNTEHYKEYYHI
Ga0114981_104780251	3300009160	Freshwater Lake	MAKRQDCKVYADLHKTNQVIYLTIEDAYEEWNNTEHYKEYYHIVKLIACLPETPD
Ga0105104_100654529	3300009168	Freshwater Sediment	MTEFYVIMLKRQDGKVYADLHKTTQDIYLTIEDAYEEWNNTEHYKEYYHIVKLIASLEDEE*
Ga0103849_10161064	3300009221	River Water	MTIFYTIMLKRQDGKVYADLHKTDQFIYLTEEDAYEELNNKEHFKEYYHVVKLIACLENEND*
Ga0103850_10004977	3300009223	River Water	MTIFYTIMLKRQDGKVYADLHKTDQFIYLTEEDAYEELNNKEHFKEYYHVVKLISCLENEND*
Ga0103854_10323483	3300009228	River Water	MTEFYVIMLKRQDGKVYADLHKTNQVIYLTIEDAYEEWNNNEHFKEYYHIVKLIACLDEELKQFDK
Ga0103858_101555322	3300009239	River Water	MTIFYTIMLKRQDGKTYADLHKTNQHIYLTEEDAYEELNNNEHFKEYYHIVKLIACLEEEK*
Ga0103852_10046065	3300009385	River Water	MTEFYVIMLKRQDGKVYADLHKTNQVIYLTIEDAYEEWNNNEHFKEYYHIVKLIACLDEELKQFDKEDFD
Ga0129348_12364782	3300010296	Freshwater To Marine Saline Gradient	MTEFYTIMLKRQDGKVYADLHKTSQIIYLTKEDAEEDLNCNDHYKKYYHVVKLIASLENEE*
Ga0129348_12454612	3300010296	Freshwater To Marine Saline Gradient	MTEFYTIMLKRQDGKVYADLHKTNQHIYLTIEDAYEEWNNTEHYKQYYHIVKLIASLEDEE*
Ga0129345_10221213	3300010297	Freshwater To Marine Saline Gradient	MLKRQDGKVYADLHKTNQHIYLTIEDAYEEWNNTEHYKQYYHIVKLIASLEDEE*
Ga0129351_10308442	3300010300	Freshwater To Marine Saline Gradient	MHKRQDGKVYADLHKTNQIIYLTKEDAEEDLNYDDHYKKYYHVVKLIASLENEE*
Ga0129333_1004139814	3300010354	Freshwater To Marine Saline Gradient	MTEFYTIMLKRQDGKVYADLHKTNQNIYLTIEDAYEEWYNNEHYKQYYHIVKLIASLENEE*
Ga0129333_106310493	3300010354	Freshwater To Marine Saline Gradient	MATAGCEFYVIMQKRQDKKVYADLHKTNFKIYLDYEDAKEDFNDSEHYHIVKLIAYCEEL
Ga0129333_108053232	3300010354	Freshwater To Marine Saline Gradient	MTEFYVIMLKRQDGKVYADLHKTNQHIYLTIEDAYEEWNNTEHYKEYYHVVKLIASCEDEE*
Ga0129333_109273081	3300010354	Freshwater To Marine Saline Gradient	MTEFWVIMQKRSDNKIYADLHKTTQQIYLTYEDAEDEFNNSEHYKKYCHIVKLIATLPDE
Ga0129333_109659912	3300010354	Freshwater To Marine Saline Gradient	MMTTFYTIMLKRQDNKTYADLHKTNQQIYLTIEDAEEAFNSNEHFQKYYHIVKLIACLEKEL*
Ga0129333_116332271	3300010354	Freshwater To Marine Saline Gradient	MTEFYVIMLKRQDGKVYADLHKTNQHIYLTIEDAEDEFNNSEHYKQYCHIVKL
Ga0129336_103244131	3300010370	Freshwater To Marine Saline Gradient	EMTEFYVIMLKRQDGKVYADLHKTNQVIYLTIEDAYEELNNTEHFKENYHIVKLIACLDEELK*
Ga0129347_10473972	3300012504	Aqueous	MLKRQDGKVYADLHKTNQHIYLTIEDAYEEWNNTEHYKQYYHIVKLIASLED*
Ga0129346_10914861	3300012965	Aqueous	QDGKIYADLHKTNQIIYLTKEDAEEDLKHDVDTSYRHIVRLIACLEEELND*
Ga0177922_108930381	3300013372	Freshwater	RQDGKVYADLHKTNQVIYLTIEDAYEELNNTEHFKENYHIVKLIACLDDLKK*
Ga0181362_10416452	3300017723	Freshwater Lake	MTEFYVIMVKRQNGKVYVDLHNTNQVIYLTIEDAYEEWNNTEHYKEYYHIVKLIASLEDE
Ga0181344_12271101	3300017754	Freshwater Lake	MTEFYVIMLKRQDGKVYADLHKTNQHIYLTIEDAEDEFNKSEHYKEYCHIVKLIACLEDE
Ga0181356_12521902	3300017761	Freshwater Lake	MTEFYVIMLKRQDGKVYADLHKTNEVIYLTIEDAYEEWNNTEHYKEYYHIVKLIACLPETLEEL
Ga0181348_11670163	3300017784	Freshwater Lake	MTEFYVIMLKRQDGKVYADLHKTNQVIYLTIEDAYEEWNNTAHYKEYYHIV
Ga0181355_11903661	3300017785	Freshwater Lake	MTEFYVIMVKRQNGKVYVDLHNTNQVIYLTIEDAYEEWNNTEHYKEYYHIVKLIACLPETLEEL
Ga0194022_10052082	3300019937	Freshwater	MMTEFYTIMHKRQDGKVYADLHKTNQIIYLTREDAEEDLNNNDHYKKYYHVVKLIASLENEE
Ga0207193_17329933	3300020048	Freshwater Lake Sediment	MTNFWVIMQKRRDGKVYTDLHKTNEIMYLNYEDAVEHFNNSEHYKEYYHIVKMIATLDEE
Ga0208235_100010810	3300020530	Freshwater	MTEFYVIMLKRQDGKVYADLHKTTQDIYLTIEDAYEEWNNTEHYKEYYHIVKLIASCEDE
Ga0207942_10014865	3300020549	Freshwater	MTEFYVIMLKRQDGKVYADLHKTNQVIYLTIEDAYEEWNNTEHYKEYYHIVKLIASLEDE
Ga0208465_10151722	3300020570	Freshwater	MTEFYVIMQKRRDNKVYADLHKTNQRIYLTIEDAFDELNSSEHYRDYCHIVKLIACLDEELEKL
Ga0213868_102822642	3300021389	Seawater	MTEFYTIMLKRRDGKVYADLHKTNQHIYLTIEDAYEEWNNTEHYKQYYHIVKLIASLEDE
Ga0213866_105495623	3300021425	Seawater	IMLKRRDGKVYADLHKTNQHIYLTIEDAYEEWNNTEHYKQYYHIVKLIASLEDEE
Ga0222713_105898573	3300021962	Estuarine Water	MTEFYVIMLKRQDGKVYADLHKTNQVIYLTIEDAYEELNNTEHFKENYHIVKLIACLDEELLEL
Ga0181353_10341824	3300022179	Freshwater Lake	MTEFYVIMLKRQDGKVYADLHKTNQVIYLTIEDAYEEWNNTEHYKEYYHIVKLIASCEDE
Ga0196905_100150917	3300022198	Aqueous	MTEFYVIMLKRQDGKVYADLHKTNQHIYLTIEDAEDEFNKSEHYKQYYHIVKLIASLENE
Ga0214917_1000000518	3300022752	Freshwater	MTEFYVIMLKRQDGKVYADLHKTNQVIYLTIEDAYEELNNTEHFKENYHIVKLIACLDGEIEKL
Ga0214917_100008592	3300022752	Freshwater	MTEFYVIMLKRQDGKVYADLHKTNQVIYLTIEDAYEELNSTEHFKENYHIVKLIACLDDLKK
Ga0214917_101652032	3300022752	Freshwater	MTEFYVIMLKRQDGKVYADLHKTDRVIYLTIEDAEDEFNNSEHYKEYCHIVKLIACLDDLKNEI
Ga0208162_10132775	3300025674	Aqueous	MMTEFYTIMHKRQDGKVYADLHKTNQIIYLTKEDAEEDLNYDDHYKKYYHVVKLIASLENEK
Ga0208162_11330172	3300025674	Aqueous	MTEFYVIMQKRQDGKIYADLHKTNQIIYLTKEDAEEDLKHDVDTSYRHIVRLIACLEEELND
Ga0208019_11855281	3300025687	Aqueous	MMTEFYTIMHKRQDGKVYADLHKTNQIIYLTKEDAEEDLNYDDHYKKYYHVVKLIASLENEE
Ga0209856_10007414	3300026837	Sand	MTEFYVIMLKRQDGKVYADLHKTNQVIYLTIEDAYEELNNTEHFKENYHIVKLIACLDDLKK
Ga0255074_10019571	3300027121	Freshwater	MTEFYVIMLKRQDGKVYADLHKTNQVIYLTIEDAYEELNNTEHFKENYHIVKLIACL
Ga0255071_10029112	3300027127	Freshwater	MTEFYVIMLKRQDGKVYADLHKTNQVIYLTIEDAYEELNNTEHFKENYHIVKLIACLEEE
Ga0255063_10122732	3300027151	Freshwater	MTEFYVIMLKRQDGKVYADLHKTNQVIYLTIEENYHIVKLIACLEEEE
Ga0209867_10098402	3300027393	Sand	MTEFYVIMQKRQDGKVYADLHKTNQVIYLTIEDAYEEWNNTEHYKEYYHIVKLIASLEDE
Ga0208975_10136432	3300027659	Freshwater Lentic	MTEFYVIMLKRQDGKVYADLHKTNQVIYLTIEDAYEELNNTEHFKENYHIVKLIACLGDLKK
Ga0209442_11288292	3300027732	Freshwater Lake	MTEFYVIMLKRQDGKVYADLHKTNEVIYLTIEDAYEEWNNTEHYKEYYHIVKLIACLPETLEELTQ
Ga0209085_100023314	3300027741	Freshwater Lake	MTNKVGHEFWVIMQKRRDGEVYADLHKTNQYIYLTYEDALVVFHNSEHYKEYYDIVKMIATLDEEE
Ga0209593_101142733	3300027743	Freshwater Sediment	MTEFYVIMLKRQDGKVYADLHKTTQDIYLTIEDAYEEWNNTEHYKEYYHIVKLIASLEDE
Ga0209444_101714703	3300027756	Freshwater Lake	MTEFYVIMLKRQDGKVYADLHKTNEVIYLTIEDAYEEWNNTEHYKEYYHIVKLIACLPETLEELAQEHS
Ga0209296_101050322	3300027759	Freshwater Lake	MTEFYVIMLKRQDGKVYADLHKTTQDIYLTIEDAYEEWNNTEHYKEYYHIVKLIASLEDD
Ga0209288_100932793	3300027762	Freshwater Sediment	MTEFYVIMLKRQDGKVYEDLHKTNQVIYLTIEDAYEEWNNSEHYKEYYHIVKLIASLEDE
Ga0209770_1000044962	3300027769	Freshwater Lake	MTEFYVIMLKRQDGKVYADLHKTNQHIYLTIEDAYEEWNNTEHYKEYYHIVKLIASCEDK
Ga0209500_1000028442	3300027782	Freshwater Lake	MTTFYVIMQKRRDGEVYADLHKTNEIMYLTYEDAVEHFNNSEHYKEYYHIVKMIATLDEE
Ga0209536_1030030951	3300027917	Marine Sediment	MTEFYVIMQKRQDGKIYADLHKTNQIIYLTKEDAEEDLKHDVDNSYRHIVRLIACLEEELND
Ga0307488_107644122	3300031519	Sackhole Brine	MTEFYVIMLKRQDGKVYADLHKTNQVIYLTIEDAYEEWNNTEHYKEYYHIVKLIASLEEL
Ga0315291_109104782	3300031707	Sediment	MTEFYVIMLKRQDGKVYADLHKTNQVIYLTIEDAYEEWNNTEHYKEYYHIVKLIASLEDK
Ga0315904_110921391	3300031951	Freshwater	MTEFYVIMLKRQDGKVYADLHKTNQHIYLTIEDAEDEFNNSEHYKQYCHIVKLIACLDG
Ga0315289_106116395	3300032046	Sediment	MTEFYVIMLKRQDGKVYADLHKTNEVIYLTIEDAYEKWNNTEHYKEYYHIVKLIACLPETLDELAQE
Ga0315295_107895213	3300032156	Sediment	MTEFYVIMVKRQDGKVYADLHKTNEVIYLTIEDAYEEWNNTEHYKEYYHIVKLIASLEDK
Ga0334982_0408536_65_259	3300033981	Freshwater	VGRMTEFYVIMLKRQDGKVYADLHKTTQDIYLTIEDAYEEWNNTEHYKEYYHIVKLIASLEDEE
Ga0334995_0119244_132_296	3300034062	Freshwater	MLKRQDGKVYADLHKTTQDIYLTIEDAYEEWNNTEHYKEYYHIVKLIASCEDEE
Ga0334995_0683272_199_381	3300034062	Freshwater	MTEFYVIMLKRQDGKVYADLHKTNQHIYLTIEDAYEEWNNSEHYKQYFHIVKLIASLPDE
Ga0310127_249703_14_202	3300034072	Fracking Water	MTEFYTIMLKRQDGKVYADLHKTNQHIYLTIEDAEDEFNKSEHYKQYCHIVKLIASLEKEND
Ga0335020_0000056_19396_19581	3300034082	Freshwater	MTNFWVIMQKRRDGKVYTDLHKTNEIMYLSYEDAVEHFNNSEHYKEYYHIVKLLATLDEE
Ga0335020_0369427_330_521	3300034082	Freshwater	MTNFWVIMQKRRDGKVYTDLHKTNEIMYLTYEDAVEHFNNSEHYKEYYHIVKILATLDEEEND
Ga0335020_0510605_36_221	3300034082	Freshwater	MTNFWVIMQKRRDGKVYTDLHKTNEIMYLNYEDAVEHFNNSEHYKEYYHIVKILATLDEE
Ga0335010_0582333_83_277	3300034092	Freshwater	VGRMTEFYVIMLKRQDGKVYADLHKTNQVIYLTIEDAYEEWNNTEHYKEYYHIVKLIASLEDEE
Ga0335031_0322096_47_208	3300034104	Freshwater	MLKRQDNKVYADLHKSNQVIYLTKEDAEVDFNYSDHYKQYYHIVKLIASLPNE
Ga0335036_0000008_70080_70280	3300034106	Freshwater	MTNKVGHEFWVIMTKRQDREVYADLHKTNQKIYLEYEDALEDFYYDAHFKENYHIVKMIAYLDEEL
Ga0335036_0741748_142_330	3300034106	Freshwater	MTEFYVIMLKRQDGKVYADLHKTNQVIYLTIEDAYEELNNTEYFKENYHIVKLIACLDDLKK
Ga0335058_0114489_694_885	3300034121	Freshwater	MTNFWVIMLKRRDGKVYADLHKTNEIMYLTYEDAVEHFNNSEHYKEYYHIVKMIATLDEEEND
Ga0335048_0078561_210_401	3300034356	Freshwater	MTTFYVIMQKRQDGKVYTDLHKTNKIIYLNYEDASCDLNKKDHFKKYYHIVKLLATIDEEDDD

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F083877

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences