3300008982: Combined Assembly of De NOVO T5 (live) Tyne Sediment Benzoate Gp0125094, Gp0125095, Gp0125096

Overview

Basic Information

• IMG/M Taxon OID: 3300008982
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0117429 | Gp0125094 | Ga0116011
• Sample Name: Combined Assembly of De NOVO T5 (live) Tyne Sediment Benzoate Gp0125094, Gp0125095, Gp0125096
• Sequencing Status: Permanent Draft
• Sequencing Center: Shell Corporation
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 189266441
• Sequencing Scaffolds: 4
• Novel Protein Genes: 4
• Associated Families: 4

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Proteobacteria	1
Not Available	1
All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanotrichales → Methanotrichaceae → Methanothrix → unclassified Methanothrix → Methanosaeta sp. PtaU1.Bin112	1
All Organisms → cellular organisms → Archaea → environmental samples → uncultured archaeon	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Syntrophic Microbial Communities From An Anoxic Layer Of The Sediment Of River Tyne Near Scotswood, United Kingdom
• Type: Environmental
• Taxonomy: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Sediment → Syntrophic Microbial Communities From An Anoxic Layer Of The Sediment Of River Tyne Near Scotswood, United Kingdom

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Sediment (non-saline)

Location Information

• Location: UK (Newcastle upon Tyne)
• Coordinates
  • Lat. (^o): 54.971158
  • Long. (^o): -1.703654
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F050029	Metagenome / Metatranscriptome	146	Y
F059489	Metagenome / Metatranscriptome	134	Y
F064732	Metagenome / Metatranscriptome	128	Y
F091072	Metagenome / Metatranscriptome	108	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0116011_1002508	All Organisms → cellular organisms → Bacteria → Proteobacteria	3393
Ga0116011_1008567	Not Available	1545
Ga0116011_1019228	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanotrichales → Methanotrichaceae → Methanothrix → unclassified Methanothrix → Methanosaeta sp. PtaU1.Bin112	879
Ga0116011_1116113	All Organisms → cellular organisms → Archaea → environmental samples → uncultured archaeon	561

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0116011_1002508	Ga0116011_10025084	F050029	MIRTRGENMATIVIHWKDKEIPPMELKAAAYKGADSSIIKITSNGKDYWFNWGECWFLETTSTE*
Ga0116011_1008567	Ga0116011_10085674	F064732	AALAAARERCTMPPAQSAERHVRFPSSPMDPGRFIAAIVTRSTSPPGRPEDTDQIDALSDLFLSEYHLMGI*
Ga0116011_1019228	Ga0116011_10192281	F091072	MAGTVKETIAPICKETEEDIKALLKGTDVAWAQYKRCHGTKVTDTKELDEFLDSL*
Ga0116011_1116113	Ga0116011_11161131	F059489	MTQSNDQHAVDVDTYISKNSRVKSFVYDRGEIRTIAENLGFKTDHVRTELRKLGYSLIKNSSHGRMIWK