NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300008922

3300008922: Microbial communities of nutrient treated water from Blanes Bay, Barcelona, Spain - NB2



Overview

Basic Information
IMG/M Taxon OID3300008922 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)
Gs0117944 | Gp0126076 | Ga0103487
Sample NameMicrobial communities of nutrient treated water from Blanes Bay, Barcelona, Spain - NB2
Sequencing StatusPermanent Draft
Sequencing CenterSodertorn University
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size59187279
Sequencing Scaffolds18
Novel Protein Genes22
Associated Families20

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Alphaproteobacteria incertae sedis → SAR116 cluster → Candidatus Puniceispirillum → Candidatus Puniceispirillum marinum1
All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Phycisphaerae → unclassified Phycisphaerae → Phycisphaerae bacterium1
Not Available9
All Organisms → cellular organisms → Bacteria2
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea → Oligotrichia → Strombidiidae → Strombidium1
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea → Oligotrichia → Strombidiidae → Strombidium → Strombidium inclinatum3
All Organisms → cellular organisms → Eukaryota → Sar1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameMicrobial Communities Of Nutrient Treated Water From Blanes Bay, Barcelona, Spain
TypeEnvironmental
TaxonomyEnvironmental → Aquatic → Freshwater → Unclassified → Unclassified → Bay Water → Microbial Communities Of Nutrient Treated Water From Blanes Bay, Barcelona, Spain

Alternative Ecosystem Assignments
Environment Ontology (ENVO)marine biomebaysea water
Earth Microbiome Project Ontology (EMPO)Free-living → Non-saline → Water (non-saline)

Location Information
LocationBarcelona, Spain
CoordinatesLat. (o)41.666Long. (o)2.8Alt. (m)N/ADepth (m)N/A
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000075Metagenome / Metatranscriptome2622Y
F000088Metagenome / Metatranscriptome2436Y
F000237Metagenome / Metatranscriptome1498Y
F000588Metatranscriptome1006Y
F000820Metagenome / Metatranscriptome878Y
F002691Metagenome / Metatranscriptome536Y
F009426Metagenome / Metatranscriptome318Y
F010466Metagenome / Metatranscriptome303N
F012347Metagenome / Metatranscriptome281N
F034583Metagenome / Metatranscriptome174N
F045106Metagenome / Metatranscriptome153N
F049451Metagenome / Metatranscriptome146N
F060807Metagenome / Metatranscriptome132N
F070840Metatranscriptome122Y
F073629Metatranscriptome120Y
F074917Metagenome / Metatranscriptome119N
F076148Metagenome / Metatranscriptome118Y
F090440Metagenome / Metatranscriptome108N
F099286Metagenome / Metatranscriptome103N
F101265Metagenome / Metatranscriptome102N

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0103487_1000448All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Alphaproteobacteria incertae sedis → SAR116 cluster → Candidatus Puniceispirillum → Candidatus Puniceispirillum marinum4114Open in IMG/M
Ga0103487_1002073All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Phycisphaerae → unclassified Phycisphaerae → Phycisphaerae bacterium1645Open in IMG/M
Ga0103487_1005681Not Available900Open in IMG/M
Ga0103487_1006335All Organisms → cellular organisms → Bacteria847Open in IMG/M
Ga0103487_1008572Not Available709Open in IMG/M
Ga0103487_1009102Not Available684Open in IMG/M
Ga0103487_1010028All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea → Oligotrichia → Strombidiidae → Strombidium647Open in IMG/M
Ga0103487_1010219Not Available640Open in IMG/M
Ga0103487_1010496All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea → Oligotrichia → Strombidiidae → Strombidium → Strombidium inclinatum630Open in IMG/M
Ga0103487_1010526All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea → Oligotrichia → Strombidiidae → Strombidium → Strombidium inclinatum629Open in IMG/M
Ga0103487_1011354All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea → Oligotrichia → Strombidiidae → Strombidium → Strombidium inclinatum602Open in IMG/M
Ga0103487_1012322All Organisms → cellular organisms → Bacteria573Open in IMG/M
Ga0103487_1012774Not Available561Open in IMG/M
Ga0103487_1013055Not Available554Open in IMG/M
Ga0103487_1013295Not Available548Open in IMG/M
Ga0103487_1013684All Organisms → cellular organisms → Eukaryota → Sar539Open in IMG/M
Ga0103487_1014820Not Available515Open in IMG/M
Ga0103487_1015345Not Available505Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0103487_1000448Ga0103487_10004481F074917MRFAETKRQKPTSFLTTKAKNKLDTIRQNPINQQKKQCGDRCHYKHSQCSSAGFTPRRPGNPVDFLTDLSNKLCGRHFSHRYLPIQVLINQDTAISTLRFPWVFDQANGQHLMKSIPAIFTLKG
Ga0103487_1002073Ga0103487_10020737F045106NVLFIEEFIEILGGDNFFLCDSIHQEQLFTMQDKLAKLIADHANNGTSVARHLVPLLPNTFNVE*
Ga0103487_1002991Ga0103487_10029911F000237MVLHYFTP*YYLYLVQLHVMFCHES*DTDSGETTYEDKSGSYVS*FYDAFLKEIQDA*Y*VIFVFSYFFIHHFDGSTVNYFFFER*NISELDEIRFYGVAPH*YFRPLMGILTIAPTHYEGLMWFAL*LVLLASLPLLNTFYNPYNKYLSVIPTQNSVLQTIFFILFMMSLYCAANMLPCGRYYYEDEGGYVGNP*VKFSYQYGYLYLMWIVHHLDTLDHYIFQFNQTLKRKYIMKSAPERSVA*
Ga0103487_1005681Ga0103487_10056812F012347MNRIKHGNINKWTATKAGQVIEFASSKPRHVKFEITANSNIEIWVADNNKMSDAVLVGTSNGKTEIQYTAPATTYVQIKAEKSADVFVNIPDLDQAVENTDNPSFTSIEPRVNNSTEFDRMVQFMKHNETQRNAQLEAERAALRAEVAKIKAEAETVVEAPIEAETEDAGETPE*
Ga0103487_1006335Ga0103487_10063353F034583PPFVVCESSVSLLLFFWTLIFLFVYILVPLIKLRFVIVSEKNSSHELEKTCTPFYGNTFKFNDTIV*
Ga0103487_1008572Ga0103487_10085721F073629EEDSSFMQGVLRHGQMAAAEREDTKNTAKDARKDATAKLMETATNMMKNGVTPDVVQFIETTITEVNSEVLGAIVDEHHRDQGIINAILDDFDAAIAEMEACAESVRGQHVERELLSHAHQLCRSDEAIKCARSRKCEEELEELWERVKIEEEEMRRIHWAIHGEWCEGSAPGHPSLADPFQWQIGESWEGPETSQSTDPYPAIDLSADVIEFRRFSVEYFGLYIAQKPRVELAWE
Ga0103487_1009102Ga0103487_10091021F070840RKMLETLGSYRGENKRAGLGTLPDVPVGGHPGNDHFYKQVEMAVRLTVMLSLIGCMVWLPEQTKAVGMARFAPFAGLAGCLMCFFSTFSIGGVLNTASAGISGCFVACFNIWLLRGFFPDGVTPGMGFTSAASLTGWVDLAIFNLLVLGFNCRMGFRMTSMAVNVGFMMCFLNPADKTLFSKNFKINPNGAAVSTFIGVCVGSLCAVLSVVLPYPMGWASSNMKAAGK
Ga0103487_1009389Ga0103487_10093891F000237HES*DTDSGETTYEDKSGSYVSWFYDAFLKEIQDAWYWVIFVFTYFFMHHFDGGTVNYFFFER*NISELDEVRFYGVAPHWYFRPFMGVLTISPTHYEGLMWFAL*LILLAFLPVINTFYNPYNRYLSVIPMQNSLLQSIFFILFMASLYCAASMLPCGRYYYEPEGGYVGNP*VKFSYQYGYLYLM*IVHHLDALDHYIFQFGQTLKRKYFTRGSSRTDLN*
Ga0103487_1010028Ga0103487_10100281F076148TLAVAALLGLASYNEVNAITIFSNRGDKLYVEVSSSSDSSSSDDDAENIQLGDDEEVDHSNEFFLPGQHEMLGGGGYERVTPARFAADTDDIFMRSMIEQYALEQKNKDGTPSGKFWMDEAATRAAAREVLETNCGVKAAARDSWLNTYFGKAWNHFDVNRTGKVEVIKMPQLMRFLCSDQQMYLW*
Ga0103487_1010219Ga0103487_10102191F049451KNLSSMKTLLMKPLFTFLFILCFSASYGQQLQLKEKYNSRNHRTLSFKTDRVKGSIKGSNASLSLTLKNTSEEAMDLSNIQLALVDATGRGAKLCGNTKILKPGRKTTLHLEACNGNDGLFMLNKAYSSRQAFKEDAFFLRNKEWQLRIGQDVVTFYTDF*
Ga0103487_1010496Ga0103487_10104961F000088IIAVACLLGYTEAATVAQKSSFAPPALGPYASDTDHLSAECYGGDEDDIMYDVFERYRVEERNPVGAGTGIWKLPKASGPQWAADIVRRFHVMDDDKVNSYVAANFDNFWKKYDNNGTGEIYESEGEVFMRALLGPNNRFRLAPGALSDMDSASLHVQNEFSATPDLLPYRHRYELALQNYPDGRTALQ*
Ga0103487_1010526Ga0103487_10105261F002691MRVSGFNGADEDEIMDNIYSRYSEEGRTTSGHKTGQKLLMKDQARLAAGTVLEAAHKLSPADVPKYLEANFEASWNHFDQNHEGWIRYEETHTFQRYLNGKLNKFNAAPGSITDLTSGGVNYALSYPAGSEQTPIRQV*
Ga0103487_1011354Ga0103487_10113541F000820DNLSTLFDSNVTRGALKNLVTDKPSPITTKLAQKTDGDILSALFDANVTRGALKNLVTDKPSPITQKLAQKNDGDILSALFDANVTRGALKNLITDKPSPITTKLAQVIRSDADILSALFDANVTRGALKNLVTDKPSPITTKLAQKSDGDILSALFDANVTRGALKNLVTDKPSPITQKLAQKTDSDILSALFDANVTR
Ga0103487_1012322Ga0103487_10123221F099286VFCLFFFNCNKNNSCEFLDDHNQLLKPVVLKKFEDDVLKVFKNAGLEVTINAFLINEELDSVSKNYYTANLISNYSNQSMSQYSSAFLEIYCDSIARIRSKPVSRFEFEELYNQSVD*
Ga0103487_1012774Ga0103487_10127741F010466VVFLLVQLNVFAQSAELEVGYDLAQEMLQWEELNPTHKAESDRYLKSMNYAFGYNGPDVEEVYHLLSDVDGAIPTKIEDSYDGRRKTWRATSVFVSLALHSEGEKRMFYLDMANHIARTDSDQTYAAVLLLEYVESIGSSGVDKRRSKILAYVQAYEEEIGIEFAERIYAFLGEN*
Ga0103487_1013055Ga0103487_10130553F101265ELRLKRNYHCRITDVGEDYDLRVIISKSIGGYFVKTSSSEIAETN*
Ga0103487_1013295Ga0103487_10132952F060807QYRGVLGQVQETLAKQEQEQYRANASVGDPFFKPGVERIKPEQKTDSASYGNKSIFSPRQNSYGDYIFGNQEERQRSMPVRGNVEGPLAMKDQNGDGKITQGDVIKARVEGYKK*
Ga0103487_1013309Ga0103487_10133091F000075LVAAVSATQYDSMTEDELLVNLESTLNSAQRSEARGDGDAAVAKTAAIKNIQKALTARILKRLDDGQPLVEVARKMKAIEGMQPQINDMERRLGIMQSVEPVLENAIKTLQKVVDVRGMGKK*
Ga0103487_1013684Ga0103487_10136841F000588EYFIMKVIALVLMLVCTPAVVAEESNPLGKVFELMSALEAKITKEGEAEAKAFNDYVEWCDDASANLHNEIKTGGEKKEELDATISKCKADIESSSVKIEDLSGSIAADEKELKEATAVRNKEVATFKASEAELVDAIDTLDRAVGILQKEMSKSPASLAQVNTASLDSVLNGLSVVIN
Ga0103487_1014820Ga0103487_10148201F090440EISGLKLATDLRLKRVYHCRITDVGEDDDLRIIIRKSIGG*
Ga0103487_1015286Ga0103487_10152861F000075LALIAAVAATKYDHMTEDELLVSLSNTLSSALESEARGDGDAAVAKTAAIKNIQKSLTARILKRLDDGQPLVEVARKMKAIEGMQPQINDMERRLGIMQSVEPVLENAIKTLQKVVDVRGMGKK*
Ga0103487_1015345Ga0103487_10153451F009426AKVNKDVKLSLNMILGEISYTIIFFMTTSPCVISAGAARETLFEGKADYCMIVCE*

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