3300008749: Human buccal mucosa microbial communities from NIH, USA - visit 1, subject 763759525 reassembly

Overview

Basic Information

• IMG/M Taxon OID: 3300008749
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0063646 | Gp0053337 | Ga0115681
• Sample Name: Human buccal mucosa microbial communities from NIH, USA - visit 1, subject 763759525 reassembly
• Sequencing Status: Permanent Draft
• Sequencing Center: Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 56677023
• Sequencing Scaffolds: 13
• Novel Protein Genes: 13
• Associated Families: 13

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → unclassified Porphyromonas → Porphyromonas sp. oral taxon 279	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → unclassified Porphyromonas → Porphyromonas sp.	3
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae	2
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Cytophagia → Cytophagales	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Neisseriales → Neisseriaceae → Neisseria	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium	3
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Oral Cavity → Buccal Mucosa → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal surface

Location Information

• Location: National Institutes of Health, USA
• Coordinates
  • Lat. (^o): N/A
  • Long. (^o): N/A
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F030786	Metagenome	184	N
F040149	Metagenome	162	N
F041827	Metagenome	159	Y
F043235	Metagenome	156	N
F045567	Metagenome	152	N
F047508	Metagenome	149	N
F053092	Metagenome	141	N
F061926	Metagenome	131	N
F080165	Metagenome	115	N
F084342	Metagenome	112	N
F098763	Metagenome	103	N
F099454	Metagenome	103	N
F103431	Metagenome	101	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0115681_102067	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → unclassified Porphyromonas → Porphyromonas sp. oral taxon 279	3281
Ga0115681_105267	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → unclassified Porphyromonas → Porphyromonas sp.	1664
Ga0115681_105705	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae	1560
Ga0115681_106527	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → unclassified Porphyromonas → Porphyromonas sp.	1402
Ga0115681_106723	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Cytophagia → Cytophagales	1371
Ga0115681_107760	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → unclassified Porphyromonas → Porphyromonas sp.	1225
Ga0115681_109294	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Neisseriales → Neisseriaceae → Neisseria	1070
Ga0115681_112312	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas	860
Ga0115681_112628	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae	842
Ga0115681_113249	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium	812
Ga0115681_114710	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales	744
Ga0115681_115668	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium	707
Ga0115681_119108	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium	604

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0115681_102067	Ga0115681_1020673	F053092	MQSDQGLILCLTHALLVLGALILEPAEMEDTMDDHTVQLFGVLVAKELGITTHRIKADEHVPRDHIPLTLVEGDDISIVVMIKKVLIGLQDALITTELIAELADTAVIAGSDLTDPVAKDTLSEARLLDVFVSIVSYKLRFFRHK*
Ga0115681_105267	Ga0115681_1052672	F047508	MLGHRLVEGRVKYPYLRRIGEYLRHSFDTEDVGWVVKRSKLCALMEHIYYLWGDTYALSKALCTVYEAVTDGVDLIEGLYEVLFFENVEDNLYATCVVRNVKVALNLLSFGVTEGDEGVVDPYALFVPRGQDLVVGELDEGELQGGAATVEDQDFHKVLYYMVRCELIPSSP*
Ga0115681_105705	Ga0115681_1057052	F045567	LEGSITPLLYRAEGEARRPWVRMVTEDVVHTSTHRVEDALLPVDGDILTPRDGTHIVQTERVVVVLVSQEDRIDMIDTETCGLVVEVRATVDEDTLPTLGDDEGRGAQTTVTSIRAMAHRAATAYLGDTSAGARTEKNYLHVSRRESYHGKEKPRLTEREGAW*
Ga0115681_106527	Ga0115681_1065272	F098763	MDRRTSLRVLSTALYLATKLFKAVVRTTISYDPSDEVEGKGRVNAIPTAVDE*
Ga0115681_106723	Ga0115681_1067233	F030786	QMLVVMIVTSSLQLLLKNGSATKGGNAMGAKKISLTDIVDGDDSETGVLKVKYFDDGADKIFENNNNRILNTINSQHISYNSQSAEYSKPQLFLLYQSLKVDC*
Ga0115681_107760	Ga0115681_1077602	F040149	VADEGAEELRWEVLIEEQGIPVLFVEVEAWYDGWVSSSEILRSVGIALEREPRLTPVWSHDSEDAIDYFIYDVLVPEGHALTAVREREAVVAQLLNIHRYVYYP*
Ga0115681_109294	Ga0115681_1092942	F103431	MIDLDALIVGMLFFIQLFLQGIAWRITIAHFFHAERGNAAAAAFDGAFGENIADCHAEDDNDKDAESQKEGFHVCIPEG*
Ga0115681_112312	Ga0115681_1123121	F099454	MKASKLLWAVVMALTFVLTSCDRLTDEPTLEDRGYYKYFDSTAQHKSFRVVTASGKPYNHKIDWHIIGIRDSKSDTYLTKKVDTLSNGDLKISYDWVSFTVRENKSVIDVEVQENETGKVRAVYLNTNTSGRHITLPDMRVTQRA
Ga0115681_112628	Ga0115681_1126281	F084342	VSGQCGAKLFLLGGYLAIPICRPFFAQALKETLGQERGLGDAYDKDYQNEKALQWIHRRHILGICKEE*
Ga0115681_113249	Ga0115681_1132491	F061926	FGNLDYICVRYQIMMIKTAKHIKTFLASVLLLIFVMNVSGLFVHLHHQETHQKTEKIAECSDKVCYHKAHLQTKSDCDCGFLCTLNYFYILPEKPLTEIHVNEYFSYFSSYKIFVSERIILLWQSRAPPVLS*
Ga0115681_114710	Ga0115681_1147101	F043235	VTRYPEGAIALFIGLAHRDQCDIDRIDTIPKEVWEFMEVTREIVNTLIQISGAAILIKEVKDGMYMPHHLWAEVPRLGKVQHVEGFHVREALAIIVEGFGEAAGGCHSMAKDQEVPALYCRSHGFEGGRSMASNVLLPGSAH*
Ga0115681_115668	Ga0115681_1156681	F041827	QKEKLVLLKQLSEGSTVTFQYKNRNEIESVNIDGVGNSDIDYEYDTYGRIVKERRFHRRYDYGETNITYQYDNQGRLVSSHAISTQYYPDTGYTPRCSVEKKHTYTYQGNKVTVKIEMGTDTCSAIPETGKEKTITLFVENGKVVKSLDENNQIIETIEYLNTKNTLRNMKGFPALVVEFYIRPFTYELPFYNGIEHIEDLRFIDNIKTRDFHNGSYWEYRYSYDKGKSHDNDYL
Ga0115681_119108	Ga0115681_1191082	F080165	LLLLLSLTACNNKTKTISTLDLEKVVINYKELPAPVKKKVFPPNNGLITFGEENREEYESFQETNNPKKYEYYTKQDPQLAWVHAPYIRNKKTKQEYSIDKDGPMGSRYIIYGDSLYISNHYNIYEEDSLRYTFTRYILR*