3300008742: Human tongue dorsum microbial communities from NIH, USA - visit 2, subject 159814214 reassembly

Overview

Basic Information

• IMG/M Taxon OID: 3300008742
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0063646 | Gp0053331 | Ga0115672
• Sample Name: Human tongue dorsum microbial communities from NIH, USA - visit 2, subject 159814214 reassembly
• Sequencing Status: Permanent Draft
• Sequencing Center: Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 140209855
• Sequencing Scaffolds: 11
• Novel Protein Genes: 11
• Associated Families: 11

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria	3
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → unclassified Porphyromonas → Porphyromonas sp. oral taxon 279	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Lactobacillales → Streptococcaceae → Streptococcus	1
All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria	2
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae → Chryseobacterium group → Chryseobacterium	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → unclassified Eubacteriales → Clostridiales bacterium	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pasteurellales → Pasteurellaceae → Haemophilus → Haemophilus parainfluenzae	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Oral Cavity → Tongue Dorsum → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal surface

Location Information

• Location: National Institutes of Health, USA
• Coordinates
  • Lat. (^o): N/A
  • Long. (^o): N/A
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F040149	Metagenome	162	N
F046431	Metagenome	151	Y
F046433	Metagenome	151	N
F051211	Metagenome	144	N
F054109	Metagenome	140	N
F055792	Metagenome	138	N
F071328	Metagenome	122	N
F077405	Metagenome	117	N
F081454	Metagenome	114	N
F094006	Metagenome	106	Y
F097527	Metagenome	104	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0115672_100246	All Organisms → cellular organisms → Bacteria	35921
Ga0115672_100681	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → unclassified Porphyromonas → Porphyromonas sp. oral taxon 279	20162
Ga0115672_103609	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Lactobacillales → Streptococcaceae → Streptococcus	6926
Ga0115672_106161	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria	4604
Ga0115672_107480	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales	3880
Ga0115672_109689	All Organisms → cellular organisms → Bacteria	3054
Ga0115672_110098	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae → Chryseobacterium group → Chryseobacterium	2938
Ga0115672_115270	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → unclassified Eubacteriales → Clostridiales bacterium	1900
Ga0115672_122880	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pasteurellales → Pasteurellaceae → Haemophilus → Haemophilus parainfluenzae	1199
Ga0115672_124686	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria	1096
Ga0115672_145072	All Organisms → cellular organisms → Bacteria	528

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0115672_100246	Ga0115672_10024620	F054109	MVGRPKSKRGVKVHTAFKIYPDDKARAQAMAEKLDMSLSSYINKAVLEKVVRDEKSEN*
Ga0115672_100681	Ga0115672_10068112	F055792	VEIAGEALDSTSAVAPRILLLTTQLGESLLASLRTEDGVIAEAMVTGALERDLAIDCALEEVRPVFVDESDDGTEAGTTWSRHPLETLQKEGYILFEGSMLPCKACRVDPRCSVKSLDLEPRIIGEAIEPVALPDVTRLDESIALQGIGSLRDLLMTPDVSETDYLQTSREEGTDLLQLMSIIARKYQLFHTFVS*
Ga0115672_103609	Ga0115672_10360912	F097527	MIYFKMEKIGNSTHNKEKKTRSENLVFITIPAAGGEPARPCGHW
Ga0115672_106161	Ga0115672_1061612	F051211	MRVKKAIKVFEKIRDLPYGTSGSDEVWSCYQKCVLLKQELQHIGVTSQLLIGVFDWQDLQIPEHILKIRRQQYERHVILRVFIDEFAYDVDPSIDIGLTPMLPMACWDGKSSTTTMAPLRRLRVYRPHSLHERILSQLRRKIFRSNPESFYTAIDIWLATIRVS*
Ga0115672_107480	Ga0115672_1074804	F094006	MRGALEPAGPTGALHEPAVSVEAHIAYLQAGGIARRGLFAFGGSNLFAVAELGAEAPHAIDMYDIALCKPLSELFAEELE
Ga0115672_109689	Ga0115672_1096893	F071328	MKWKFIPEGECIVEFVELCKHLVLERTIDSKEPLTTALYLRYSSQLLLKKKRAIRRLGIEKENISAILRQGGRHYKEYGDDEHRVFFLDTDVNIYFCKHYQLPMYIIQRIEFSNKESRPFILKVLPVKRSEW*
Ga0115672_110098	Ga0115672_1100983	F081454	MKVFKLVLLLFITSASLVFGQEKRYFFKHEFQPNSKYLIKYKTDMDGGYKFVGSKEVIDKIGMDGVKMTINSDIESAISTQKKQGNNVPFILEYTKYFYKAEINGETVNRKIPLQGVKLIGDIVNGKKMEVKNVEGNIDENTKKILIESIKQFSAIDTDFPKEGLKIGDSFDVVVPYKQSTQMGDIEMIMNIKYKLLKVEKEEAYFDMLIDFVMGDKNVKNMDLSASGDGKGFLLFDMKNNYFTNQNIDMTIN
Ga0115672_115270	Ga0115672_1152702	F046431	MLTYTQTLVFAAESELTLTPKPETNNIHLKWTGPLNSKYRVYQKKPGSNNFETIGLTDFNNVDEEVKVLNVYPDNQSVNTILWNTTEFNIPTVHVRYNDGEEKDILKSASLKAWMEGRYYNRR*
Ga0115672_122880	Ga0115672_1228801	F077405	ALPTELFPRLLVAKQRGVFYGFISLCQIKFVKKSFD*
Ga0115672_124686	Ga0115672_1246861	F046433	HNIGMIELPTSPDALSELSPVAPPKLLSQAQDASRDNPVTYVVDDGYMGTRTSDPCFRKMRRGTTEYKALNEFLYFMKMVEPYVPDHIKDNARELRNELVFLGMSELHFAATALAKRLRCHLEVDSQYILSLVLSKFPDDEFEEYKGRLKVYDGRGEIDERSKILFLDDWIIGGDQVRERISVFEAYNNPGAHKVSVLVMAASSNYIDNGIGADSLWGEATYPVEAYYRLKNDHNDWGVSRVTGIHSSTDNTFGYEVDGIAYCAIERGILKGEGIDELSLPALANIVRPYRNGENFDGLSRFRQLLEKE*
Ga0115672_145072	Ga0115672_1450722	F040149	RWEVLIEEQGIPVLFVEVEAWYDGRVSSSEILRSVGVALEREPRLTPVWSHDSEDAIDYFIYDVLVPEGHALTAVGERETVVAQLLNIHRYVYYP*