3300008739: Human tongue dorsum microbial communities from NIH, USA - visit 1, subject 737052003 reassembly

Overview

Basic Information

• IMG/M Taxon OID: 3300008739
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0063646 | Gp0053066 | Ga0114021
• Sample Name: Human tongue dorsum microbial communities from NIH, USA - visit 1, subject 737052003 reassembly
• Sequencing Status: Permanent Draft
• Sequencing Center: Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 149647688
• Sequencing Scaffolds: 27
• Novel Protein Genes: 29
• Associated Families: 23

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria	4
Not Available	7
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pasteurellales → Pasteurellaceae → Haemophilus → Haemophilus parainfluenzae	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Prevotellaceae	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Tannerellaceae	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	1
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Siphoviridae sp. ctHip2	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Prevotellaceae → Alloprevotella → Alloprevotella sp. oral taxon 473	1
All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria → Candidatus Saccharimonas → Candidatus Saccharimonas aalborgensis	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Prevotellaceae → Prevotella	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Prevotellaceae → Alloprevotella → unclassified Alloprevotella → Alloprevotella sp. OH1205_COT-284	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Prevotellaceae → Alloprevotella → Alloprevotella sp. oral taxon 473 → Alloprevotella sp. oral taxon 473 str. F0040	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Lactobacillales → Streptococcaceae → Streptococcus	1
All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria	1
All Organisms → Viruses → Predicted Viral	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas	1
All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria → unclassified Saccharibacteria → Candidatus Saccharibacteria bacterium	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Oral Cavity → Tongue Dorsum → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal surface

Location Information

• Location: USA: Maryland: Natonal Institute of Health
• Coordinates
  • Lat. (^o): 39.0042816
  • Long. (^o): -77.1012173
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F032313	Metagenome	180	N
F045567	Metagenome	152	N
F046431	Metagenome	151	Y
F046432	Metagenome	151	Y
F046433	Metagenome	151	N
F068942	Metagenome	124	N
F071328	Metagenome	122	N
F072446	Metagenome	121	N
F073671	Metagenome	120	N
F076191	Metagenome	118	N
F077404	Metagenome	117	N
F077405	Metagenome	117	N
F078842	Metagenome	116	N
F084362	Metagenome	112	N
F085820	Metagenome	111	N
F089055	Metagenome	109	Y
F092230	Metagenome	107	N
F097527	Metagenome	104	N
F099454	Metagenome	103	N
F103430	Metagenome	101	N
F103432	Metagenome	101	N
F103433	Metagenome	101	N
F105380	Metagenome	100	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0114021_100075	All Organisms → cellular organisms → Bacteria	100601
Ga0114021_100408	Not Available	35033
Ga0114021_100467	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pasteurellales → Pasteurellaceae → Haemophilus → Haemophilus parainfluenzae	32503
Ga0114021_100496	Not Available	30961
Ga0114021_100632	All Organisms → cellular organisms → Bacteria	25854
Ga0114021_100742	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Prevotellaceae	22960
Ga0114021_100805	All Organisms → cellular organisms → Bacteria	22009
Ga0114021_100889	All Organisms → cellular organisms → Bacteria	20652
Ga0114021_101135	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Tannerellaceae	17037
Ga0114021_101560	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	13479
Ga0114021_103040	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Siphoviridae sp. ctHip2	7750
Ga0114021_103074	Not Available	7684
Ga0114021_103245	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Prevotellaceae → Alloprevotella → Alloprevotella sp. oral taxon 473	7323
Ga0114021_104326	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria → Candidatus Saccharimonas → Candidatus Saccharimonas aalborgensis	5684
Ga0114021_104521	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Prevotellaceae → Prevotella	5490
Ga0114021_105759	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Prevotellaceae → Alloprevotella → unclassified Alloprevotella → Alloprevotella sp. OH1205_COT-284	4369
Ga0114021_106276	Not Available	4045
Ga0114021_107061	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Prevotellaceae → Alloprevotella → Alloprevotella sp. oral taxon 473 → Alloprevotella sp. oral taxon 473 str. F0040	3610
Ga0114021_111392	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Lactobacillales → Streptococcaceae → Streptococcus	2264
Ga0114021_113984	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria	1828
Ga0114021_114099	All Organisms → Viruses → Predicted Viral	1814
Ga0114021_115290	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae	1665
Ga0114021_116144	Not Available	1575
Ga0114021_117149	Not Available	1480
Ga0114021_127202	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas	904
Ga0114021_129489	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria → unclassified Saccharibacteria → Candidatus Saccharibacteria bacterium	827
Ga0114021_135554	Not Available	675

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0114021_100075	Ga0114021_10007525	F046432	MWGMTENELSEIISKYQMPEDRYSVEEEGSFGESEFFWVIKNQSTNKKYLLVNTYSHHGVESELECYREGGFDNLEAIPRKIETLENASDADDEISKYLFGMYSIFEMKS*
Ga0114021_100408	Ga0114021_1004088	F084362	MNCTFTVRWSDEKNKPHAKTYATEADAKRAKKWLLEHGVRDVDVAVKINNKSAGSLKDDKISGTEAEQKGFWWQE*
Ga0114021_100467	Ga0114021_10046728	F077405	LLVAKQRGVFYGFISLCQIKFVKKVFNWLKIIQK*
Ga0114021_100496	Ga0114021_10049610	F103430	MKLITIKAFIGSNNKTKKLEVDKIISTVNANHEAFTLQYPVIGCWKGEVEETAVLYLSGERQKVMNTLNELKEVLDQEAIAYQIENDLQLI*
Ga0114021_100496	Ga0114021_10049639	F084362	MNCAFTVRWSDEKNKPHAKTYVTEADAKRAKKWLLEHGVRSVDIAVRINNKPAGSLKDDKQSEAAAEQKGFWWEK*
Ga0114021_100632	Ga0114021_1006323	F103433	MKEWSKNKPGVVFFFVVWFILSISFIGNFFGTGLWNGWFDGFQKDSSAIIEKTAYCKNKYDYKGPLIAVDSKEMMSQDCNPSQVEPYVSQYGLQARVIAGLSPNDTSKIPAYIKRVSIFLALLTAFLLALVVQKIRALFGGITASVFVVMLAFSPWIAGYARNIYWIEPMLIAPFVISFVGYQYFKKSKKLWLFYIIESVAMFLKLLNGYEYVSTIAISVLVPIIFFELIHKNVKIINLWKQAVPVFAATVVAFFGAYWVNFVSLTDYYGSSDKAASAINAKASYRGISGIRSMRAYAVGNFKILRPETYNFINQIVNLDNMANNSGKTYKYIIVNVVNYLLLPAITLPVHINGMFGEFIQSILFWTILGYLIILSSRKIIGKKYSRPFLWSMNFSVIGAFCWLALMPGYALPHAHINGIIFYIPLLLFVYVLIGLWADYVVKRTVKYE*
Ga0114021_100742	Ga0114021_1007424	F071328	MSQKHWTFTHIIRYIEEYERNPLLIERMKWEFILEGEYIVEFVKLCKHLVLERTIDPKKHQAAAICLRYSSQLLLKKRRAIRRLGIEKEYVSAILRLYGIHYREYGDNEHRVFFLDTGINIYFSKHDQSSIYIIQRIEFSNEEYRSFILKVLPVKKSEW*
Ga0114021_100805	Ga0114021_1008052	F046432	MQMSESELSEVVSKYQMPEGRYLIEQEGSFGRGEFFWVIKNESTNKKYLLMNTYSHHGVEAELECYREGGFDNLEAIPRKIETLEKASDADDEIFKYLFGFYSIFEIKS*
Ga0114021_100889	Ga0114021_10088939	F046431	MKRISKIGITIILILSVIISYGSVIISMAAESELTLTPKPETNNIHLKWTGPQNSSYKVYQXXXXPGSSTFETIGLTDFSNNATDEEVKVLNVYPHSKNIGKLWEGSSAFQTLPMVNVTYLDGHTETIEKSALLKVWMEGRNSE*
Ga0114021_101135	Ga0114021_10113517	F085820	MRSTFYLFAVLFLATTFFSCETDEPAPRARREIVNPIEAFMYPRDIKVYADDDDGRRWLILVLPDSTKSSFAPTSKSTPAEVARYKELSKLVGNPTEPVVNECHFHRTWLTQGVKAIRVVRTQADGRDEEVTAQCGNLSFYTYKQIFDCQFKCGNRSIFAKPLGETVEADYLWLPGRDVFGLVAPLNPDHLKQRIVLRLADGTEIEKELSDKGKK*
Ga0114021_101560	Ga0114021_1015607	F092230	MRQAHKRMVDKLKTRLLKVFFPLFIVCIIFVAFFRQIGCGSDGDYAFQISEWGAKLKNIYGIDFINKEIIVRDNAVRVDGIQCLYAVNKNKDGLSIYLLLPGGDYLTHNYVGSSFVRFSNGSEYINMAYGEGSAEVSDSSSTGEVQNTEEKEARDKVDEAINSMRHLFASAIMVNLRVVELYKILTVCMILIAIAMTVGYYSYLKPETVYGFYCKLRRKEKYPSDVNLVKRIGFLIIILPPCMLFLLIV*
Ga0114021_103040	Ga0114021_1030409	F105380	KQGRIFKKFDSNLLDSYMDGRQNNYNINLAELDDQISDGIVYADRNGKMIYKFGAKKIIQTAITNGLEISGLNKDLEMKHYSFWVPDLYFVSFYSFNPNEDLYIAYRSKDEEFICLTNIWPDGSSYAEDYFPNGDRLTLKRLCKGSMMSDVSSSDYDAWRNNAVTRASQFVNKFVSARGNSDLDFVGSALRSKVPSHNIKKCAVFLGTITKEQENVNTYEEFMEWTKNTKWFK*
Ga0114021_103074	Ga0114021_10307411	F076191	MKIIAENPAEEALLWRIKALSDEIVRQDNRYTSMPVWTILDNNKAGKDYGAVMYFTGKAAEQHIKENDHHYDNPMISVRSAHDNRELKDIVHLLILAGGNEIPSNHYGVLRDV*
Ga0114021_103245	Ga0114021_1032454	F077404	MNMLKTVFAFFFALCFMMGANSYAQKTDSINAEASERVLNRNAIYIPPALEQYADTTLLHQRFNVENKGNYLYTPFTEDNEPSILFNYGFLHPLGERFYNCFMGKVDRILRPKADKGFIIFTNYLVVLGDTYAFDTSNKDTSKLADLKYLDFRHIKRDFSYGHPYQGFTDYDRVELSNFVQSYGRQAALETANAWIMASYPFSLQSTKFENRYTRGRKLILTDGHSTLYLYFLMIDSVALNFDTEVLPYIKGVFRFNRFR*
Ga0114021_104326	Ga0114021_1043264	F089055	LKVEKMNSTPECVTKTPEIEAREKLAAIFSDAERRDDNSKVNPELGRAAIDGKDIKNIIKVNSADNGAVDLCNKALGSYGKSLDRIKNSPIEAVWAIGNSLQRLREYKTKEICE*
Ga0114021_104521	Ga0114021_1045211	F032313	MYRLLILLFAITLMACDNDTPQEKPREQEKHEVPVPKPKPQFDEVGERIWYGQTPAMRLDSTDYGAGLTWVLEMRTSSIPKQRFDSLFKQTVWEIKDICAVETDLSLAKKIPKFVGGSITKEFTCRNGVILRHMQGIDINLVDTVNYVYNEDLNEIVLEGTGIRWYVLRLNKYAVEFLQQGHNIWGPFDWYYGRNSGRSEVMLEAK*
Ga0114021_104521	Ga0114021_1045212	F032313	MYRFLILLFAITLMACDNNTPQEKPHEQEKHEVPVPKSKPQFDEVGERIWYGRTPAMRLDSTDYGAGLTSVFGMRTSSIPKQRFNSLFKQTVWEIKDIRVVETDLSLAKKNPGIMGWITTTEFTCRNGVIVLHRQGIDVNHVDTVNYVYDEVGNEIVLEGTGIRWFVLRLNKNAVEFLQRGRTMWGPYDWYYGRNSGRSEVTLEAK*
Ga0114021_105759	Ga0114021_1057595	F068942	MIRKILSLPTLALCFTLCTALFAGCGEKNDGFVTEVRWSNVKNPEYGEYINIRLKAEGETFTTVGDHSWISFSNDASTLDTFTRHRFPEMDKDTAYYKDIVIYMTRNERERTTTLKLVAPPNRTQQPKQFKFSVSVTPPAMYMFKVHQPALPAKAR*
Ga0114021_106276	Ga0114021_1062764	F068942	MIRKILSLPTLALCFTLCTALFAGCNENYIEGFVTKVRWSNVKNPKYGDYINITLKAEGETFTTVGDHSRISFSGSVSTLDTFTRHDFSESDKDTAYYKDIVIYLTRNESKGTATLKLVAPPNRTQQPKQFDFSIEVTPPSLYIFKVRQPALPAKAQ*
Ga0114021_107061	Ga0114021_1070611	F072446	MKKLLFLLSGLCLYCLAACDNDHEPTKPVRPFHGDTLAQIAWNFRFIVENHYHSIPGIVPEGTTYRVPVIPRSVEDRTEKEYNDMELGKEAHLVFRATVHGDTINRHKKELKALSLQLNRLTETSIGTSPVLCGVKSIEAVGIAENGNTYDLSWEIKLRIRDYFGRVKHRSSGIVTLDCEDTQSKTAKYVVPLGRIREYELAEHIQPELKFYLPVKRCMDFSSIRFAITLFNGEVLSFQHKLPSKSVLQELPNKSVLENYQQYGFIPESTYFTTLWPLPDYKYNEREL*
Ga0114021_111392	Ga0114021_1113921	F097527	MIYFKMEKIGNSTHKKEKKTRSENLVFNTIPAAGGGPARPFGDLAF
Ga0114021_113984	Ga0114021_1139842	F046433	MIELPTSPNALSELSPVAPPKLLSQAQDASRDNLMVYVKADNYLGTETSDPSFMKSRYKTTEYEAINDFVQFIEMTKHYLPDYMEYCAKELIDELAFLGMPELNFAANALAKRLRHHLEVDNKPVYIDVGNSLSQCRVKNEMKSSQYILSLVLSKFPDDEFEEYEGRLKVYGGRGEIDKSSKILFIDDWIIGGDQVRERISVFGAYNNPGAHKVSVLVMAASSEYIDNGIVADSLWGEATYPVEAYYRLKNDHNDWGVSRVTGIHSSTDSAFGYEVDDIAYRAIEGGVLKGERIDRLTLPALVNIVRPYRNGEDFDGLSRFRQLLEKG*
Ga0114021_114099	Ga0114021_1140993	F078842	MIISSIYKTVDNDGLIAHIYEHLLAQYVLKRLQDNEFFVLSDIILSAKTYGDTCFMDAELYSPEVKKTYDEALREFDKLIIPEDDILRAASECGIEMNRNIVEVDRSELSKKLREVQISPWRKQIDMAYRKAHDESSVNMLFRTSYIKYSKESDDLFRECVLEYSIDESHIQTPVDQALAAIVMQIVALNFLTVVREKYTVYDRGDQWSEASISVGYRMFLGLLKKDDKIINQLSCDFLEYIKSLSLSVFCDNLQKALVRCSDNHKQVILNRSTLNAILGGCVIGGKGWLEMADSARIRQMINSIELDIYEVNS*
Ga0114021_115290	Ga0114021_1152903	F045567	MRQRDGRDTLTEKLEGGITPLLYRAEGEARRPWVRMVTEDVVHTSTHRVEDALLPVDGDILTPRDGTHIVQTERVVVVLVSQEDSIDTIDTETCGLVVEVRATVDEDTLPTLGDDEGRGAQTTVTSIRAMAHRAATAYLGDTSAGARTEKNYLHVSRRESYHGKEIPSLSSERGCVVERVVR*
Ga0114021_116144	Ga0114021_1161443	F103432	MKLIHSLFSLSLLLALGGLFCTTACQDDVEPTQRAGLISTDSLIHAAEVYDGKAFEHVVSTTATGLRVSEPRRVVPMLPRQLHVEMEGKTLFRRHNLPSVSAYSLQVVAVGDTIYRQKESDAQFNADLDALFRQSIGIAPRLFGVRELSVAGIDRKGKPRDLGNYSCPLLQGKRRNVNFRTKEGVFHEYFEAASVDTFSVKSNWLLKTKAEPSLYAPSFRLLVWEQPAEGCTKLRFTLTLVDGRSLVAEVPLY*
Ga0114021_117149	Ga0114021_1171492	F032313	MACDNDTPQEKPREQEKHEVPVPVPKPQFDEVGERIWYGRTPAMRLDSTDYGAGLISVFGMLTSKIPKQRFDSLFKQTVWEVKDIRVVETDLSLAKKNPGILGWVTTTEFTCRNGVILLHWQGIDVNHVDTVNYVYDEVDNEIVLEGTGIRWSVLRLNKNAVEFLQRGRTMWGPFDWYYGRNSGRSEVTLEAK*
Ga0114021_127202	Ga0114021_1272021	F099454	MKASKLLWAVVMALTFVLTSCDRVTDEPTIEGKMNKFFDSQAQRKSFRVLTASGKPYNHKIDWHIIGILDPKSETYLTKKIDTLSNGDLKISYDWVAFIVRENKSVIDVEVQKNETGQDRSVDFVAQDNHKGLASPSMTVIQRAK*
Ga0114021_129489	Ga0114021_1294891	F046432	IISKYQLPMDDYLVEVDGAFGRGEFFWVIKNQSTNKKYLLVNTYSHHGVEAEVEYYREEGFDNLEAIPRRIETLENASDADDEISNYLFGMYSIFEMKP*
Ga0114021_135554	Ga0114021_1355543	F073671	MNKEQAEHELAELHAQERSLEKALEIVREKIRELVNYTDKNKGQK*