3300008728: Human stool microbial communities from NIH, USA - visit 2, subject 763840445 reassembly

Overview

Basic Information

• IMG/M Taxon OID: 3300008728
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0063646 | Gp0053334 | Ga0115675
• Sample Name: Human stool microbial communities from NIH, USA - visit 2, subject 763840445 reassembly
• Sequencing Status: Permanent Draft
• Sequencing Center: Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 195331089
• Sequencing Scaffolds: 8
• Novel Protein Genes: 8
• Associated Families: 8

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Bacteroidaceae → Bacteroides → Bacteroides thetaiotaomicron	1
All Organisms → cellular organisms → Bacteria	2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	3
Not Available	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → unclassified Oscillospiraceae → Ruminococcaceae bacterium LM158	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal surface

Location Information

• Location: National Institutes of Health, USA
• Coordinates
  • Lat. (^o): N/A
  • Long. (^o): N/A
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F051936	Metagenome	143	N
F067720	Metagenome	125	Y
F068855	Metagenome	124	N
F074899	Metagenome / Metatranscriptome	119	N
F076190	Metagenome	118	Y
F081354	Metagenome	114	Y
F087335	Metagenome	110	N
F090515	Metagenome	108	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0115675_100291	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Bacteroidaceae → Bacteroides → Bacteroides thetaiotaomicron	75210
Ga0115675_102201	All Organisms → cellular organisms → Bacteria	11642
Ga0115675_103128	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	8281
Ga0115675_104357	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	5993
Ga0115675_108493	Not Available	3167
Ga0115675_112986	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → unclassified Oscillospiraceae → Ruminococcaceae bacterium LM158	2094
Ga0115675_114787	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	1847
Ga0115675_115589	All Organisms → cellular organisms → Bacteria	1755

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0115675_100291	Ga0115675_1002917	F051936	MKQEGTGQVLFFPLALRGKALGFSVLQEHAVMIPVISIFFATLIIRYLSIHISIKK*
Ga0115675_102201	Ga0115675_1022015	F087335	MPELYFNDANLLPESCEEEQYAEAVLNDILAGKTANTEMCILPCFYHAPMCKGMLINLDDGTTLRIEPFLNKEGEPELLIGCVTEETVEEVYQRVSNYDFDEPCAGSMPS*
Ga0115675_103128	Ga0115675_10312810	F074899	MSGRKQWNKQAATSSFLDKKTPQSLIQQGLEGSTAVGKDEVTSSNLVSSSRT
Ga0115675_104357	Ga0115675_1043574	F090515	VTTCCKAGPKAALQGTAPGRVACLEFAGEEKRKTNIAADYAVKALAFTALLCRHIGSIRTFLKS*
Ga0115675_108493	Ga0115675_1084935	F067720	MASTTYRHLGDVTEMYAAQEQFRDLTKTYHLGNVPVMVRNAGQLPQPFWLGAACGGGSGGAAR
Ga0115675_112986	Ga0115675_1129864	F068855	VPTVEAQGPQVRKSLAPQGLQAEKERENANVQNAGWLHSFDADYHYRGSDLHYHVNVSAALSE*
Ga0115675_114787	Ga0115675_1147873	F081354	LIFGQTKRALDLVRENQQSSAHNFVKDFSSFFPESRRRSPLKKGAVATIPLEYGKAEVQILFEPLQATISSMELPKNFENKKLPNTLRRLAFLP
Ga0115675_115589	Ga0115675_1155894	F076190	ITIFVKNVFTAASRVLGRVWSLVRITVPNDLKFVRIRVEKPQNNSLYPYFQREPL*