3300008615: Human buccal mucosa microbial communities from NIH, USA - visit 1, subject 675950834 reassembly

Overview

Basic Information

• IMG/M Taxon OID: 3300008615
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0063646 | Gp0052975 | Ga0111231
• Sample Name: Human buccal mucosa microbial communities from NIH, USA - visit 1, subject 675950834 reassembly
• Sequencing Status: Permanent Draft
• Sequencing Center: Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 101487259
• Sequencing Scaffolds: 13
• Novel Protein Genes: 17
• Associated Families: 16

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales	1
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → unclassified Porphyromonas → Porphyromonas sp. oral taxon 279	1
All Organisms → Viruses	1
All Organisms → cellular organisms → Bacteria	2
All Organisms → Viruses → Predicted Viral	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales	1
Not Available	2
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → unclassified Porphyromonas → Porphyromonas sp.	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas	1
All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Oral Cavity → Buccal Mucosa → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal surface

Location Information

• Location: USA: Maryland: Natonal Institute of Health
• Coordinates
  • Lat. (^o): 39.0042816
  • Long. (^o): -77.1012173
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F022002	Metagenome	216	Y
F040149	Metagenome	162	N
F045567	Metagenome	152	N
F049707	Metagenome	146	N
F051213	Metagenome	144	N
F053092	Metagenome	141	N
F055792	Metagenome	138	N
F067846	Metagenome	125	Y
F089055	Metagenome	109	Y
F090517	Metagenome	108	N
F092232	Metagenome	107	N
F095631	Metagenome	105	N
F095632	Metagenome	105	N
F098763	Metagenome	103	N
F101358	Metagenome	102	Y
F105377	Metagenome	100	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0111231_1000001	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales	237766
Ga0111231_1000048	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	44157
Ga0111231_1001237	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → unclassified Porphyromonas → Porphyromonas sp. oral taxon 279	5728
Ga0111231_1002467	All Organisms → Viruses	3592
Ga0111231_1002556	All Organisms → cellular organisms → Bacteria	3515
Ga0111231_1003542	All Organisms → cellular organisms → Bacteria	2822
Ga0111231_1003679	All Organisms → Viruses → Predicted Viral	2741
Ga0111231_1006188	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales	1965
Ga0111231_1006839	Not Available	1845
Ga0111231_1007321	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → unclassified Porphyromonas → Porphyromonas sp.	1767
Ga0111231_1021342	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas	922
Ga0111231_1024258	Not Available	852
Ga0111231_1040599	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria	608

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0111231_1000001	Ga0111231_1000001110	F095631	MASDAVSANTVARSYSDTVINTVKNDTMLNANIYDINQYIENIKKKYISEDDLTLSMGIFGYLGDVNSNALQNAVSMAAEYSNEAIPIKAKFEKNVISHALSLGINKIYAEPSTMNAMLIFYENELILNTVNDTFRLDREVKIMVGDYEFHIPYDLIIKRILLPTGDYVYTGMYDTTQVNPIITRNSKDVDPYLKPTIKSEIDGQPVIMCLVELRQYEFSTIHKTIVTSNPLESKMMQFEFDNQLAGFDVDVKEYGNPVRKLKPVYNGLNTDGVNDFCNYTFIDSSTIRIMFDNASYLPTANTEVTVNLYTSQGSKGNIKYKDTIYFRVNSSNINYDRLNLLVVPTGEAQYGLDKKSISDLKKLIPKEALARGSVTNSTDINNYFNTIADEDNKIFFFKKMDNPLSRLYYAFLLMDTTTNIIPTNTIPVECIRRDFDNISDSNYILTAGNSIKYDGKTNASVVYNASKDELKKISNESFLYMNPFMCIINKKPLYVSYYLNIMDVSKILEFTYVNQDSKVQFITNNMNWKRSYLTKRDTYVCDISILQNIQSNIGIIHRDDPYDPNKITGADLKVIAVFYSDDKYQVPYRWAEAKFVNYDESSYSFDYRFELNTDNKIDKNVRLKVNDVHEMKATADKFEPGYMLNNMPMKIFVYCKNVFEYDAGRNKTEQYFADGFLDGYSLTNEYTVKYGIDFLYNYSDLIESVIKIKKQDNGQISYYIDRVPVIGYDYVNTEEKIQNFINELEKKRIHILDCLEVLEDSFGIDIKFFNTYGPSKIFYIENSVPINRVNLSLKFKIKLLTASDKYIIDYIKNDIRKYIEDKSKITDVHIPNIITYITQKYADSITYFEFLDFNGYGPGYQHIYRKDESIVGKIPEFLNINSTNTDDNKLDISIIIA*
Ga0111231_1000001	Ga0111231_100000114	F092232	MINQAKFIADYNERNRPKFNDKFFQKSDDDIIEDLKDVILSCQRDKFYTIRVEKFEVIDDYAEIQRLLTGEETPTISIKDSDLKILKVTYYTAIGNQEDTFDVLIAVPRVIDGAYIHLNGNDYFPLFQLVDGSTYNNTSSASAKTQSITLKTNSNAVKMLRNFFEFKLSDGETFKKLASFSVYLFDHKVTLFEYYLARFGWYKTISEFKFDHVIKVTEEDPQDDEYDTFVVQNSHMKTPIYISAVRSVLDADRILQSFVASFIISINKYATKKFTLDNIYNTDFWVCKLGFNFVSSETSVFTKGNAIIESLENSYDIPTQKRLRLPDEIKSNIYSVLKWMASEFSYIRLKDNLDASSKRIRWSEYIAAMYIMIINLKLRRLPEKPDPNVEVLRIKQQLNTPPMALIAELQKSNLKGFRNMVNDRDSFLQLKYTIKGPSGPGEGNGKKVAQNIRAVDISQLGIIDVNTSSASDPGVGGMLCPLNDKVFEYNSFTNEPEPNTWDANFDELLKIYRDQKGYTSAIALAEDAGLELTDDRSPESVAFDTEYLGNLIGKIAPTKAFETQLRPAFINMEDSGSIIFED*
Ga0111231_1000048	Ga0111231_100004811	F095632	MRPLKKGTTMSFKETTGYKVVNFVASTTASITAGAVVSALCPPAGVALTVVYSLGSGVLGSYVGDKAGQQYAENFAETIDSIKTPSNN*
Ga0111231_1000048	Ga0111231_100004847	F049707	VVSEYKSPHNDGHDPYILIWEYGSEVQQAEFIERWAEYEPDTGWTMWYFRLEDGKVMKFRALEWEQKDDVNHLTTIYFTPRKEQQ*
Ga0111231_1001237	Ga0111231_10012371	F051213	MKASKLLWAVVVALTFVLTSCDRVTDEPTIEGKVNKFFDSQAQRKSFRVLTASGKPYNHKIDWHIIGILDPKSETYLTKKVDTLSNGDLKISYDWVSFTVRENKSVIDVEVQKNETGKVRAVYLNTNTSGRHITLPDMRVTQRAK*
Ga0111231_1002467	Ga0111231_10024673	F105377	VRDFDKLPLLTPEEAFERAWEEGGAAHPVFDRGYQVRNLNDWKAIETLLRQNDVPDITIASFGLKRFEEILDALAMLHERGWRLWQTSANVYVDGEKRPVQAIRAHYRGI*
Ga0111231_1002556	Ga0111231_10025564	F101358	MTEKYSASHGAENQAPPPLPPQPEHLLTQPITTDGMPQERATHPDTHSIPKRQDVPRHQWNVLRSSGQLDEGWIDREIIDKDGTVLVRMTKLVNRSNIHQLEKCVPLAVLQEQNIDFTNAYLQRAYGVMMEDGKLQPVADTTHTTHQNDSTDEQETEVLPTQSGNTYDHLGGDSACQLVGSVAAKASDTEVDNNLLVERVLGRVKQ*
Ga0111231_1003542	Ga0111231_10035421	F055792	VEGQGVEIAGEALDSTSAVAHRILFLTTQLGESLLASFGTEDGVIAETMVTGALERDLAIDCALEEVRPVFVDESDDSTEAGTTWSRYPLETLQQEGYILFEGSMLPCEACGVDSRSSVKSLDLEPRIIGKAIEAVALPHMTCLDESISLQGIGGLRDLLVTPDVSETDHLQTSREEGTDLLQLMGIIARKYQLFHTFVS*
Ga0111231_1003542	Ga0111231_10035422	F040149	VADEGAEELRWEVLIEEQGIPVLFVEVEAWYDGRVSSSEILRSVGVALEREPRLAPVWSHDSEDAIHDFIYDTSVPKGHTLTAVRERETVVAQLLNIHRYVYYP*
Ga0111231_1003679	Ga0111231_10036793	F053092	MQSDQGLILCLTHALLVLGALILEPAEMEDTMDDHTVQLFGVLVAKELGITTHRIKADEHVPRDHIPLTLVEGDDIGIVVMIEKVLIGLQDALITTELIAELADTAVIAGSDLTDPVAKDTLSEARLLDVFVSIVSYKLRFFRHK*
Ga0111231_1006188	Ga0111231_10061882	F090517	MNRRIFSFSGLLLGLLFLASSCKKDTPRLRLSSVELRQTVWNGTLEYKSAKYGSYSVYLSFVSDSVVEVSTSTTTDLTAAHDIQAPCSYTMDDRILTLRARDEPYLNVSIDRNSWYLIRKEPSLLVFQANAGNPDREATLTLRKKL*
Ga0111231_1006839	Ga0111231_10068392	F067846	MSIIEDWERQEFNKWDKQCSKEDDYNRAIEMEIESIKEDITNCDDDVICAFREKMLDYDEVINAFDDDTFNDDEFIKAVALGTDYEEMRIKILTAMAEDRLEQLEKDYRNGYRLSAYSTTDRKR*
Ga0111231_1007321	Ga0111231_10073212	F045567	MRQRDGHDTLTEELEGSITPLLYRAEGEARRPWVRMVTEDVVHTSTHRVEDALLPVDGDILTPRDGTHIVQTERVVVVLVSQEDRIDMIDTETCGLVVEVRATVDEDTLPTLGDDEGGGAQTTVTSIRAMAHRAATAYLGDTSAGARTEKNYLHVSRRESYHGKKRPRLTERECVCVVERVVR*
Ga0111231_1021342	Ga0111231_10213422	F098763	MDRRASLRVLSPALYLATKLFKAVVRTTISYDPSDEVEGKGGMNAISTAVDE*
Ga0111231_1024258	Ga0111231_10242581	F022002	MSSRLALTLGLLLALLLSLPSHAQDGRSKVPINRTISGFTLGVTTPAEARAIIQRQGGEIEETQAWSDEVVYAITGLKYARRPTLSVRLYFYKGHLRSISFTFDDLKILEQIESGLENKYGTMAEGKATSKMRVKGIADAFTSLEVVVHSFEYDGHVGFAYAYISYTDLELERAYSAENENEI*
Ga0111231_1040599	Ga0111231_10405992	F089055	LKVEKMNSMSECVTKTPEIEARKKEAREKLAAIFSDAERCDNSKVNPELGKTAIDIENTSRMNSADDGAIDLCNKALGSYGKSLDRIKNSPIEAVWAIGASLQHLRDKYKTEESCR*
Ga0111231_1045607	Ga0111231_10456071	F022002	GIHAGSNDVDYTVTGLNYARRPTQTVCMFFYKGHLRRIVFIFNDLDVLEQIESELEDKYGTMAEGVGTSKMKSKVVFDAFTRLLIVRGFKHEGHFGFKDAYITYSDDELDRARSAEKESEI*