3300008581: Human tongue dorsum microbial communities from NIH, USA - visit 2, subject 158944319 reassembly

Overview

Basic Information

• IMG/M Taxon OID: 3300008581
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0063646 | Gp0052950 | Ga0111080
• Sample Name: Human tongue dorsum microbial communities from NIH, USA - visit 2, subject 158944319 reassembly
• Sequencing Status: Permanent Draft
• Sequencing Center: Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 123014965
• Sequencing Scaffolds: 19
• Novel Protein Genes: 19
• Associated Families: 19

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Prevotellaceae → Alloprevotella → Alloprevotella sp. oral taxon 473	1
Not Available	4
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Negativicutes → Veillonellales → Veillonellaceae → Veillonella → Veillonella tobetsuensis	1
All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria → Candidatus Saccharimonas → Candidatus Saccharimonas aalborgensis	3
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae → Riemerella → Riemerella columbina	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae	2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Lactobacillales → Streptococcaceae → Streptococcus	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → unclassified Porphyromonas → Porphyromonas sp. oral taxon 279	1
All Organisms → cellular organisms → Bacteria	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → unclassified Porphyromonas → Porphyromonas sp.	1
All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria → Candidatus Saccharimonas → unclassified Candidatus Saccharimonas → Candidatus Saccharimonas sp.	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → Porphyromonas bobii	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Oral Cavity → Tongue Dorsum → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal surface

Location Information

• Location: USA: Maryland: Natonal Institute of Health
• Coordinates
  • Lat. (^o): 39.0042816
  • Long. (^o): -77.1012173
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F043235	Metagenome	156	N
F046433	Metagenome	151	N
F053092	Metagenome	141	N
F054110	Metagenome	140	N
F055792	Metagenome	138	N
F061926	Metagenome	131	N
F063777	Metagenome	129	N
F071326	Metagenome / Metatranscriptome	122	Y
F077404	Metagenome	117	N
F077405	Metagenome	117	N
F078842	Metagenome	116	N
F080164	Metagenome	115	N
F080165	Metagenome	115	N
F081454	Metagenome	114	N
F089055	Metagenome	109	Y
F090517	Metagenome	108	N
F095633	Metagenome	105	N
F103436	Metagenome	101	Y
F105378	Metagenome	100	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0111080_100136	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Prevotellaceae → Alloprevotella → Alloprevotella sp. oral taxon 473	42800
Ga0111080_100141	Not Available	42030
Ga0111080_100159	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Negativicutes → Veillonellales → Veillonellaceae → Veillonella → Veillonella tobetsuensis	38961
Ga0111080_100341	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria → Candidatus Saccharimonas → Candidatus Saccharimonas aalborgensis	23099
Ga0111080_100879	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria → Candidatus Saccharimonas → Candidatus Saccharimonas aalborgensis	12152
Ga0111080_101348	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae → Riemerella → Riemerella columbina	9281
Ga0111080_101783	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria → Candidatus Saccharimonas → Candidatus Saccharimonas aalborgensis	7790
Ga0111080_102317	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae	6577
Ga0111080_104662	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Lactobacillales → Streptococcaceae → Streptococcus	4067
Ga0111080_105019	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae	3860
Ga0111080_109335	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → unclassified Porphyromonas → Porphyromonas sp. oral taxon 279	2361
Ga0111080_110398	All Organisms → cellular organisms → Bacteria	2153
Ga0111080_117687	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium	1353
Ga0111080_117977	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → unclassified Porphyromonas → Porphyromonas sp.	1331
Ga0111080_120305	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria → Candidatus Saccharimonas → unclassified Candidatus Saccharimonas → Candidatus Saccharimonas sp.	1192
Ga0111080_128374	Not Available	871
Ga0111080_128484	Not Available	868
Ga0111080_136863	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → Porphyromonas bobii	681
Ga0111080_137098	Not Available	677

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0111080_100136	Ga0111080_10013617	F080164	MVGLTLCAATQVTLRERALAFPLITEKDATEVDAPYAWRLPVVPLSLDNREIRNFAKYPLLPSLSGGILTVRVLVVGDTVAVHQDLMDDFAKRCRTTLGLGVRTAPKLFGIKGMHVYGVQKDGSRQAVDKQVTLHLPGFEKAEKPLHYKEQTGQLVLCEYYESHRGDLFLDVANAHPEIFGELCPVVDFHFPVELRRAYAWLLLEIELEDGTKLSTSLQHYDEQTSILDHPDRS*
Ga0111080_100141	Ga0111080_10014119	F105378	MKVSVYVDKLKKWVPISSDEILDRNKNLSDVKDKDAAITNLGLYDKFISKEALQSGFLPDVFTPENIQTDADHQFVSDSDKNNWNNKLNKPVEIQTNLEENQIGYDEVNEKFYIGLNNKNVLIGGASALDNIKIVNGFFSGNSQPTIIRNTKTREDGTLISPIFVDVQCVEYTGGDLGEVSVSYTSELINIYNTGSFTGAFQCMIVYPLGSVNR*
Ga0111080_100159	Ga0111080_10015929	F054110	VLDVNYQPTIKKLLKALQMNGRRYVVDVRQSWSKYDKPCKVYIVNRMYTEEEYKLTFPHKYKKGKTFKHGQLYKKESEYSSTKQHEVLLFLVKTYKGGD*
Ga0111080_100341	Ga0111080_1003411	F046433	MIELPTSPDALSELSPVAPPKLLLQAQDASRDNLMVYVEADDYLRTETSDPSFMKSRCETTEYKALNEFLYFMKMVEPYVPDHIKDDARELRNELVFLGMSELHFAATALAKRLRYHLEVDNKPVYIDVGNSLSQCRVKNEMKSSQYILSLVLSKFLDDEFEEYEGRLKVYGGRGEIDKSSKILFLDDWIINGSQVEERIAGFEVDNDPEDHEASVLVMAASSNYIDNGIGVDSLWGGEATYPVEAYYRLKNDHNDWGVSRVTGIHSSTDSAFGYEVDDIAYRAIEGGILKGERIDRLTLPALVNIVRPYRNGENFDGLSRFRQLLERE*
Ga0111080_100879	Ga0111080_1008795	F089055	LKVEKMSSTPECVTKTPEIEARKKEARKELAAIFPDAKRYDDNSGVKPKLGEAAVDGKDIKNIIKVNSADNGAVDFCNQALGSYEKSLDHINNGPLETVQTIGISLQRLREYKTERSCR*
Ga0111080_101348	Ga0111080_1013483	F061926	MMIKTAKHIKTFLASVLLLIFVMNVSGLFVRLHHQETHQKTEKIADCSDKVCYHKAHLQTKSDCDCGFLCTLNYFYILPEKPLTGFHVNEYFSYFSSYKIFVSERIILLWQSRAPPVLS*
Ga0111080_101783	Ga0111080_10178310	F078842	MIISSIYKTVDNDGLIAHIYEHLLAQYVLKRLQDNEFFVLSDIILSAKTYGDTCFMDAELYSSEAKKTYDEALREFDKLVISEDEILRAAGECGIEMNRNIVEVDRSELSKKLREVQISPWRKQIDMAYRKARNESSVNTLFRTSYIKYSKESDDLFRECVLEYSIDESHIQTPVDQALAAIVMQIVALNFLTVVREKYTVYDRGDQWSEASISVGYRMFLGLLKKDDKIINQLSYDFLEYIKNLSSSVFCDNLQKALVRCSDNHKQVILNRSTLNAILGGCIIGGKGWLEMADSARIGQMVNSIELDVYEVNS*
Ga0111080_102317	Ga0111080_1023175	F063777	LKVLNIKFSALPPENNSFWMKLLLFLCIPFLFIFAILLLIGWGIYSGISSIISAVKEDFFGIKDKTNIKTSKNILFENEQFKLKKEDYLPDENSQEYKIFNDFCAKSNEYLDDGYIFYKLTDEKSATDLNGAIISEFQEDIGNYILLQNLILEDNQLKNQLISFDKKTGKITVLADIKDFFWLDFDSETKTINGYNNKEQIEITISE*
Ga0111080_104662	Ga0111080_1046624	F103436	MITTSKDGFCEKSDTEILNSLKDWVSSCDVDFKREALKKIDSAFALWGARQYVSALRLLDENEVFLKKSDWPYYALGIEILRVRKHEFLNE*
Ga0111080_105019	Ga0111080_1050196	F081454	MKTFKLVLLLFITSASLVFGQEKRYFFKHEFQPNSKYLIKYKTDMDGGYKFVGSKEVIDKIGMDGVKMTINSDIESAISTQKKQGNNVPFILEYTKYFYKAEINGETVNRKIPLQGVKLIGDIVNGKKMEVKNVEGNIDEDTKKILTESIKQFSAIDTDFPKEGLKIGDSFDVVVPYKQSTQWGDIEMIMNIKYTLLKVEKEEAYFDMLIDFVMGDKNVKNMDLSASGGGKGFLLFDMKNNYFTNQNIDMTINLKLKTELLTLENTSKAKSVITQQ
Ga0111080_109335	Ga0111080_1093353	F053092	MQSDQGLILCLTHALLVLGALILEPAEMEDTMDDHTVQLFGVLVAKELGITTHRIKADEHVPRDHIPLTLVEGDDIGIVVMIEEVLIGLQDALITTELIAELADTAVIAGSDLTDPVAKDTLSEARLLDVFVSIVSYKLRFFRHK*
Ga0111080_110398	Ga0111080_1103983	F055792	VEIAGEALDSTSAVAHRILLLTTQLGESLLASLGAENGVIAEAMVSGALERDLAIDCALEEVRPVLIDKGDDGTEAGTTWGRYPLETLQKESNILFEGSMLPCEARRVDPRCSVKSLDLEPRIIGKAIEAVALPDVTCLDESIPLQRIGGLRDLLVTPDVSETDHLQTPREEGTDLLQLMGIIARKYQLFHTFVS*
Ga0111080_117687	Ga0111080_1176872	F080165	IKILLLLLSLTACNNKTKTISTLDLEKTIIDYKDLPSKVKERVFYGEAMKLGEEDEERFQALQETNNPKKYEYYTKQNPQLAWVHYPYIRNKKTKQEYSIDKDGPMGSRYIIYGDSLYISNHYNIYEEDSLRYTFTRYILR*
Ga0111080_117977	Ga0111080_1179772	F043235	MDEVVPSDEGHLLIDLCDDDPRRLRSGLGIVTRHPEGAIALFIGLAHRDQCDIDRIDTIPKEVWEFMEVTREIVDTLIQVSGAAILVKEVKDGMYMPYHLWAEVPRLGKVQHVEGFHVREALAIIVEGFGEAAGGCHSMAKDQEVPALYCRSHGFEGGRSMASNVLLPGSAH*
Ga0111080_120305	Ga0111080_1203051	F095633	MGNYENSTEVGRGEGLTEGELRTMGALAVEATEKLRKTTVRKETVLLGSVPFGSWDEFAKAVQEMAAHSYEPIPVEINTKRLIATAFLDDEGEMSVEERFVPEEVFIDLSRTRCDAEEDRNHKSYEFTCPVLKKYPDGKLYPTREAYVISAIDIDANGSQEVDFNIIYGGLN*
Ga0111080_128374	Ga0111080_1283741	F077404	PTQIGNTKNPFAMNTLKTIFTFFFTLCFMMVANGYAQKTDSINTEAGKSVLHRNAIYIPPALEQYADTTLLHQRFNVENKGNYLYTPFTEDNEPTIPFNYGFLHPLGERFYNCFMGKVDRILRPKADKGFIILTSYLVVLGDSYTFDTSNKDTSKLADLKYLDFRHIKRDFSYGHPYQGFTHNDRIELSNFVQSYGRQAALETANAWVMASYPFSLQSTKFENRYTRGRKLILTDGHSTLYLYFLMIDSVAPNFDTEVLPYIKGVFRFNRFW*
Ga0111080_128484	Ga0111080_1284841	F077405	PWQGRALPTELFPRLLVAKQRGVFYGFISLCQIKFVKKSFD*
Ga0111080_136863	Ga0111080_1368631	F090517	MNRRILSFCGLLLGLLFLASSCKKDTPRLQLSSVELRQTVWNGTLEYKSAKYGPYSVYLSFVSDSVVEVSTFTTTDLTAAHDLEAPCSYTMDDRILTLRTQGDLYLRVSIDRSSWYLIRKEPSLLVFQANAGNPAAEATLTLRKKL*
Ga0111080_137098	Ga0111080_1370982	F071326	ENMASRSVERSNKFYKATLKTIKAQLAMLGTKFIVLRPKENSKWKNVFGGSYSSDSTLENDYDEFTTTLIINQNEMKDVWNRNRDSVEAITNDGSLEVGDELQYTRDKRTYRFKITLKQGYSETGDTLFSYTLMSIIETLDM*