3300008541: Human supragingival plaque microbial communities from NIH, USA - visit 2, subject 604812005 reassembly

Overview

Basic Information

• IMG/M Taxon OID: 3300008541
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0063646 | Gp0052941 | Ga0111054
• Sample Name: Human supragingival plaque microbial communities from NIH, USA - visit 2, subject 604812005 reassembly
• Sequencing Status: Permanent Draft
• Sequencing Center: Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 149202110
• Sequencing Scaffolds: 12
• Novel Protein Genes: 17
• Associated Families: 12

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → unclassified Porphyromonas → Porphyromonas sp. oral taxon 279	3
All Organisms → cellular organisms → Bacteria	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → Porphyromonas catoniae	2
All Organisms → Viruses	1
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	2
Not Available	1
All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Neisseriales → Neisseriaceae	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Oral Cavity → Supragingival Plaque → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal surface

Location Information

• Location: USA: Maryland: Natonal Institute of Health
• Coordinates
  • Lat. (^o): 39.0042816
  • Long. (^o): -77.1012173
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F022002	Metagenome	216	Y
F045567	Metagenome	152	N
F051211	Metagenome	144	N
F070224	Metagenome	123	N
F076191	Metagenome	118	N
F094006	Metagenome	106	Y
F095630	Metagenome	105	N
F098763	Metagenome	103	N
F101360	Metagenome	102	N
F103431	Metagenome	101	N
F103434	Metagenome	101	N
F105377	Metagenome	100	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0111054_100005	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → unclassified Porphyromonas → Porphyromonas sp. oral taxon 279	356710
Ga0111054_100006	All Organisms → cellular organisms → Bacteria	337530
Ga0111054_100008	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → unclassified Porphyromonas → Porphyromonas sp. oral taxon 279	246999
Ga0111054_100019	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → unclassified Porphyromonas → Porphyromonas sp. oral taxon 279	205566
Ga0111054_100025	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → Porphyromonas catoniae	182324
Ga0111054_100053	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → Porphyromonas catoniae	118145
Ga0111054_100172	All Organisms → Viruses	55826
Ga0111054_100276	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	43855
Ga0111054_106927	Not Available	3612
Ga0111054_107686	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	3250
Ga0111054_112496	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria	1939
Ga0111054_118541	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Neisseriales → Neisseriaceae	1262

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0111054_100005	Ga0111054_10000540	F098763	MDRRASLRILSPALYLATKLFEAVVRTTISYDPSDEVEGKGGMNAIPTTVDE*
Ga0111054_100006	Ga0111054_100006204	F095630	MRYSPLYKTSKDNGLLAHVYEHLLAQYILKYLQDRGFFISSDIILTAKTYGDTCYMDVELYNPAAPNAYNEALQAFDKHTIPEKAVRRAVSECGIEMNRAVLELKQDELMSNLSRVQSSDWRQQSEMTYRKSYDKSSVNTLFCVPYLKYGKKSKKLFPEYVLEYSIDEEYINSPIDQALAAIVMQAVALNFLVAVRENYTVYDRGDQWSEASLSVGYRMFLGLAKEDKRITSQLKHEFTAYIQYLLKSPFCSNLQKALLRCSHNLEQVLLGRSTLNNILGGCVIGGRGWLEMADDARIKQMIAAIQLDVYDI*
Ga0111054_100006	Ga0111054_100006234	F051211	MRVKKAIKIFEKIRDLPYGTSGSDEVWSCYQKCVLLKQELQHIGITSQLLIGVFDWQDLPIPEHVLSLRRQRHERHVILRVFIDGSTYDIDPSIDIGLAPTLPIAHWDGTSSTATMASLKHLRVYRPHSLHERILSRLRRKLFRGNPKEFYTAIDKWLADTRAHQSS*
Ga0111054_100008	Ga0111054_10000867	F094006	MRGTLEPTGPTGALYESTVCVEAHIGYLQAGSIARLALFAFGGRHLLAVAEFGAEAPHAIDMYDIAVCEPLSELFAEELEYAFNFGA*
Ga0111054_100019	Ga0111054_10001958	F045567	MVTEDVVHTSTHRVEDALLAVDGDILTPRDGTYIVQTERVVVVLVSQEDRIDTIDTETCGLVVEVRATVDEDTLPALGDDEGRGAQTTVTSIRAMAHRAATAYLGDTSAGARTEKNYLHVSRRESYHGKEMPSLSRERGCVVERVVR*
Ga0111054_100025	Ga0111054_100025120	F022002	MSRRLALTLGLLLALLLSLPSHAQDGRSKVPINRTISGFTLGVTTPAQARAIIQRQGGKIIRAEGTQAGSDEQAYAVKGLKYARRSTLLAGLYFYKGHLRRIFFIFDDLDVLEQIESELEDKYGMMIESEGTSKSKGKGFFDAFTTLEVVRNFEYEGHSMFKDAYIAYTDEELDRAHSAEKESEI*
Ga0111054_100025	Ga0111054_100025121	F022002	MKNIYSPSSRSMSSRLALTLGLLLALLLSLPSYAQDGQSKEPINRTISGFTLGVTTPAEARAIIQRQGGEIEETQAWSDEVVYAITGLKYARRPTLSVRLYFYKGHLRSISFTFGDLKIFEQIESGLENKYGTMAEGKATSKMRVKGIADAFTSLEVVVHSFEYDGHVGFAYAYISYTDLELDRAYSAENEI*
Ga0111054_100025	Ga0111054_100025122	F022002	MSRRLALTLGLLLALLLSLPSYAQDGRSKVPINRTISGFTLGVTTPAEARAIIQLQGGKIILEVGVHAGSKDASYIVSGLNYARRPTQTVDMFFYKGHLRSIYFGFDGWDVLEQIESELEDKYGKMIESEGMFKKKGIVDAFTSLEVVRTFEYEGHVRIDHAYIAYTDEELERARSAEKESEN*
Ga0111054_100053	Ga0111054_10005394	F070224	MKRLLFLLLTLLHCTAWSQGYNAPDSIYVASGAVYIPPISGEPIYLLASPLRPVKTRGRKIRTRDWVKVDYSNRNNLIIIGFGDSSVIENLFVYYAAGFPGMKEYELYYKGTGEEITKEDFDSIKFTRMPTALREIKKYKLPRTRRSLGEVDRWQHPHLFVVEHDKKAGRYYKYRIALVIYMDYNHPEAYHPGICIIH*
Ga0111054_100053	Ga0111054_10005395	F070224	MKRLLFLLLTLLHCSAWSQVYNAPDSIYVASGAVYIPPISGEPIYLLASPLKSGHTPGSKIRTRDWVKADYSNQNNLIVRKVGGSLIIENRFAYYAAGFPEMEEYELYYKGTGEEITKEDFDAIKFTRMPTALREIKKYKLPRTRRSSGEVDRWQHLHLFVVEHDKKADRYYKYRIALVIYMDYDHPGICIIH*
Ga0111054_100172	Ga0111054_10017225	F105377	VRAEVRDFNELPLLTPEEAFERAREMGWNRPLFDHGYRVRGLADWKSIETLLRQYDAEDAVIASFGLKRFEEIFDALAMLSERGWNLWQTVANVYVGGELRAVPAIRAHYRGD*
Ga0111054_100276	Ga0111054_10027618	F103434	VVEVTLAVVKEGRTGRRFERGDTFTIDKVLVQPSAGNALRATENRVIRGDLTDETTLKIFGTGRKWPGGPHSWVKIVKGPDSLVGKTFQQAGEPLTYDASPMTRHWSVRCDTLGTESR*
Ga0111054_100276	Ga0111054_10027647	F101360	MNKEDALRRAAVAAHIAKVASQEKKRALAELEEVMAPGDTSRPMIDGNQIGTVSVSIPAPKYQVVNEKALVAWLEWNKPDAVHKVPAPWFTAAAALDGFIKQTGEIPDGVEVVQGDPRISVRISAAQAEAIQELIASGDIRMIEVGDD*
Ga0111054_106927	Ga0111054_1069276	F076191	MKIIAENPAEEALLWRIKALSDEVVRQDNRYTSMPVWTILDNNKAGKDYGAVMYFTGKAAERHIEENDHHYDNPTTCIRSAHDNRELKDVIHLLILAGGNEIPSNHYGVLRDA*
Ga0111054_107686	Ga0111054_1076862	F101360	MSKENALRKAAIAAHIAKVASQEKKKALTELEEYMAPGDTSKPMVDGLQVGTVSVSAPQPRYQVVDEKALVAWLEWNKPDAVHKVPAPWFVATAALDGFIKQTGEVPDGVEVVQGDPRISVRISTAQEEAIRELISTGDISILEIESGDA*
Ga0111054_112496	Ga0111054_1124961	F095630	MYSSLYKISKDNGLLAHVYEHLLAQYVLKYLQDKGFFISSDITLTAKTYGDTCFMDAKFHNPEAQDAYNEALRLFDKRDIPGSAALRAAAECGIEMNRLVTELVQDKLLHKLSSVQSSAWRQQSDITYRKADDKSSVNTLFCMPYIKYGVESKNLFPEYVLEYSVDEKYIQSPVDQALAAVVIQAVALNFLVMIREKHTVYDRGDQWSEASKSVGYRMFLGLIKKDDNIVDQLKREFMEYMQFLSASSFCDNLQAALVRCSHNYEQVLLGRDTLNSILGGCVIGGEGWLKMADNKLIGQILKAIEIDVYDI*
Ga0111054_118541	Ga0111054_1185413	F103431	MIDLDALVVRMLFFIQLFLQGIAWRVAIAHFLYAERRNAAAAAFDGAFGENIADCHAEDDNDKNTESQKEGFHVCIPRG*