3300008537: Human tongue dorsum microbial communities from NIH, USA - visit 1, subject 765337473 reassembly

Overview

Basic Information

• IMG/M Taxon OID: 3300008537
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0063646 | Gp0052938 | Ga0111051
• Sample Name: Human tongue dorsum microbial communities from NIH, USA - visit 1, subject 765337473 reassembly
• Sequencing Status: Permanent Draft
• Sequencing Center: Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 152506795
• Sequencing Scaffolds: 20
• Novel Protein Genes: 20
• Associated Families: 18

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae	3
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → unclassified Porphyromonas → Porphyromonas sp. oral taxon 279	2
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales	1
All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria	5
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Prevotellaceae → Alloprevotella → Alloprevotella sp. oral taxon 473	1
All Organisms → cellular organisms → Bacteria	2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae	1
All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria → Candidatus Saccharimonas → Candidatus Saccharimonas aalborgensis	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Prevotellaceae → Alloprevotella → unclassified Alloprevotella → Alloprevotella sp.	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Prevotellaceae → Prevotella	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pasteurellales → Pasteurellaceae → Haemophilus → Haemophilus parainfluenzae	1
Not Available	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Oral Cavity → Tongue Dorsum → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal surface

Location Information

• Location: USA: Maryland: Natonal Institute of Health
• Coordinates
  • Lat. (^o): 39.0042816
  • Long. (^o): -77.1012173
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F033081	Metagenome	178	Y
F041827	Metagenome	159	Y
F046433	Metagenome	151	N
F051213	Metagenome	144	N
F061926	Metagenome	131	N
F064819	Metagenome	128	N
F068942	Metagenome	124	N
F072446	Metagenome	121	N
F076191	Metagenome	118	N
F077404	Metagenome	117	N
F077405	Metagenome	117	N
F078842	Metagenome	116	N
F084342	Metagenome	112	N
F085820	Metagenome	111	N
F089055	Metagenome	109	Y
F092230	Metagenome	107	N
F095633	Metagenome	105	N
F097490	Metagenome	104	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0111051_100018	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae	232951
Ga0111051_100037	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → unclassified Porphyromonas → Porphyromonas sp. oral taxon 279	155118
Ga0111051_100262	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae	54836
Ga0111051_100293	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → unclassified Porphyromonas → Porphyromonas sp. oral taxon 279	50529
Ga0111051_100801	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales	25177
Ga0111051_100862	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria	23891
Ga0111051_101219	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae	17765
Ga0111051_101342	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Prevotellaceae → Alloprevotella → Alloprevotella sp. oral taxon 473	16366
Ga0111051_101376	All Organisms → cellular organisms → Bacteria	16005
Ga0111051_101684	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae	13101
Ga0111051_102129	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria → Candidatus Saccharimonas → Candidatus Saccharimonas aalborgensis	10714
Ga0111051_105521	All Organisms → cellular organisms → Bacteria	4617
Ga0111051_106995	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria	3674
Ga0111051_109548	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Prevotellaceae → Alloprevotella → unclassified Alloprevotella → Alloprevotella sp.	2698
Ga0111051_110392	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Prevotellaceae → Prevotella	2479
Ga0111051_110878	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria	2367
Ga0111051_112049	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pasteurellales → Pasteurellaceae → Haemophilus → Haemophilus parainfluenzae	2118
Ga0111051_118446	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria	1341
Ga0111051_118614	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria	1328
Ga0111051_119435	Not Available	1264

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0111051_100018	Ga0111051_100018158	F097490	MFLKTQKMNKKMNVFCKIILPLLCIISCSERKEIEVYNMKIDENKKEVLVEIRNNTENNYYLLSPFVDAMADHGLNHVTSEMIEGQMHYKKLDSIVCSVCIWDDICKEEYYAMRDIVLLPKKSVKTIKYKYNNEKEYKIDEFYTVFPYNGYYNEIGKKMQFMLKKKLDSSNIIKGYEFYNKDIETMTIKM*
Ga0111051_100037	Ga0111051_10003735	F051213	MRVSKILWAAVMALTFVFTSCDPFSKNEPIVEGDVDKYFDSNAQRKSFRVLTAEGKPYNHKVDWHIVGIMVPYSDTYLTKKVDTLSNGDLKISHDWVSFTVRENKSIIDVEVQKNETGKERSVTFRPSNSYKQAYLPKIRVIQRAN*
Ga0111051_100262	Ga0111051_10026229	F061926	MMIKTAKHIKTFLASVLLLIFVMNVSGLFVRLHHQETHQKTEKIAECSDKVCYHKAHLQTKSDCDCGFLCILNYFYILPEKPQIEIHVNEYFSYFSSYKIFVSERIILLWQSRAPPVLS*
Ga0111051_100293	Ga0111051_10029314	F084342	LRGYLAIPIRRPFFAQALKETLGQERSLGDAYDKDYQNEKALQWVHRRHILGICKEE*
Ga0111051_100801	Ga0111051_10080128	F064819	MILKDNQGKDRIKFLDIVRLNKEEPVFVKMKVRISTETMVSEEDLDIERSDLEDLTRELKDLCECKIRKFFFQNIDETIEIVFSINDIGTIAVEGKMYDESYMNSINFSFQTDLNGIATFSKEISQKLKKI*
Ga0111051_100862	Ga0111051_10086230	F076191	MKIIAENPAEEALLWRIKALSDELVNQDNRSTDMPMWTILDNNKAGKDYGAVTYFTGKAAERHIEENDHHYDNPTIYIRSAHDNRELKDVIHLLILAGGNEIPSNHYGVLRDA*
Ga0111051_101219	Ga0111051_1012192	F041827	MKHFLSALALGCLLLSCNRDLENNETPAPQNEKLVLLDELREGSTITFQYKNRNEIESVNIDGVGNSDIDYEYDTYGRIVKERRFHRRYDYGETNITYQYDSQGRLASSHAISTEFYPGTGLTPRCSVEKKHTYTYQGNKVTVKIEMGADTCSAIPETGKEKTITLLVENGRVTKTFDEQGNIKQTIEYYNTKNALRNIKGFPALVVEFYIRPLTYELPYYNLGIERIEDLRYIDNIKTRDFHDGDYWEYRYSYDKENTYNGDYPNGVGIHARVHNDPTYDEYLYEISADRSYIKDKK*
Ga0111051_101342	Ga0111051_10134211	F077404	MNILKTAFAFFFALCFMMGANSYAQKTESINAEASKRELKRNAIYIPPALEEYADTILLHQRFNVENKGNYLYTPFTEDNEPTIPFNYGFLHPLGERFYNCFMGKVDRILRPKADKGFIIFTNYLVVLGDTYAFDTSNKDTSKLADLKYLDFRHIKRDFSYGHPYQGFTDYDRVELSNFVQSYGRQAALETANAWVMASYPFSLQSTKFENRYTRGRKLILTDGKTTLYLYFLMTDSVALNFDTEVLPYIKGVFRFNRVQ*
Ga0111051_101376	Ga0111051_1013766	F033081	MAWLFGRAMPQDTRPTFVWPRLVTEIENAGYFSRRKFSILAVGLIIMTIATIKMLLFVPGLNQSAVSLLTRGLETFLPTRWATATAWTVGMAGVFLMGDLTNYTPSQKILHKIKATRYEVYNTILFLALLEEQAFRSGSERWNWRERVRASVCFGLLHIMNIWYNFATGIALSVTGFGFLLVYLWYYRKYRIQIIATAAAATVHALYNAIALSLIAVVLAIDIAKLL*
Ga0111051_101684	Ga0111051_1016847	F092230	MRQAHKRTVDKLKAYLLKVFFPLFIVCIILVAFFRQIGCGSEGEYAFQISEWGAKLKNIYGTDFINKEIIVRDNAVRVDGIRCLYAVNQNEDGLSIYLLLPGGDYLTHNYVGSSFVRFSNSSEYINMAHGEGSVEVSDSTSTGEVQNTEGKEARDKVDEAINSMRHLFASAIMVNLRVVELYKILTVCMILIVIAMAVGYYSYLKPETVYEFYCKLRRKEKYPSDVNLVKRIGFLVIILPPCMLFLLIV*
Ga0111051_102129	Ga0111051_1021296	F089055	LKVEKMNSTPECVTKTPEIEARKKEVRKKLDTIFSDAERRDNSKVNPELGKTAFDVANIPNNEAVDLCNQALGGYGKSLDHINNGPLEIVQTIGISLQRLREYKTEGSCR*
Ga0111051_105521	Ga0111051_1055216	F078842	MIISSIYKTVDNDGLIAHIYEHLLAQYVLKRLQDNEFFVLSDIILSAKTYGDTCFMDAELYSSEVKKTYDEALREFDKIVIPEDDILRAASECGIEMNRNIVEVDRSELSKKLREVQISPWRKQIDMAYRKAHDESSVNTLFRTSYIKYSKESDDLFRECVLEYSIDESHIQTPVDQALAAIVMQIVALNFLTVVREKYTVYDRGDQWSEASISVGYRMFLGLLKKDDKIINQLSYDFLEYIKNLSSYVFCDNLQKALVRCSDNHKQVILNRSTLNAILGGCVIGGKGWLEMADSARIRQMVNSIELDIYEVNS*
Ga0111051_106995	Ga0111051_1069954	F078842	MMISSIYKTVDNDGLIAHIYEHLLAQYVLKNLQDNKFFVLSDIILSAKTYGDTCFMDAELYDPEAKKTYDEALREFDKLVIPEDDILRAASECGIEMNRSIVEVDRSELSKKLREVQISPWCKQIDMAYRKAHDESSVNTLFRTSYIKYSKESDDLFRECVLEYSIDESHIQTPVDQALAAIVVQIVALNFLTVVREKYTVYDRGDQWSEASISVGYRMFLGSLKKDDKIINQLGCDFLEYIKILSSSVFCDNLQKALVRCSDNHKQVILNRSVLNAILGGCVIGGKGWLEMASSAQIRRMINSIELDVYEVDL*
Ga0111051_109548	Ga0111051_1095484	F072446	MRKHKKNKFNPPTHPQMKKLVFLLFGLCLYCFTACDSDHEPTKPVRPFNGDTLAQIAWNFPYIVEEHYHSIPGILPEGTTYRVPVIPRSVEDRTKKEYNEQDVDKVAHLVFRATVHGDTINRHKKEFETLARQLHALTLPTVGTSPVLCGVKSIKAVGVAENGRTYDLSWEMKLRIRDYKSRRKYDSGRIVTLECEDTESMTARYVVVLGEIRKTELAEHIQPELKFYLPVKRCMDFSSIRFDITLFNGEVLSFQHKLPSKSVLQELPNNSVLENYKQYGFEREATYFTTMWPLPEKEIER*
Ga0111051_110392	Ga0111051_1103922	F068942	MIRKILSLPTLAFCFTLGSAFFAGCNEDYIKDTKVRWSNVKNPEYGDPINITLKAEGETFTTMGDYPWISFRSDVSTLDTFTSHSFSEADKDTAYYKDIVIYLTRNKRERTTTLKLVAPPNRTQQPKQFDFSIGVTPLGTYIFKVRQPALPAKAQ*
Ga0111051_110878	Ga0111051_1108781	F095633	MRNYENSTEVGCREGLTEGELRTMGTLAMEATEELKKTTISKEAVLLGGVPFNSWDEFAKAVQEMAAHSYEPIPVKINTKRLIATAFLDDRGEMSVEENSVPEEVFIDLSRTRCVVNMDRSHKSYKFTCPVLKKYPSGELYPIREAYVISAIDVNGSQEVDFKVI*
Ga0111051_112049	Ga0111051_1120492	F077405	VVGWQGRALPTELFPRLLVAKQRGVFYGFILLCQIKFVKKFFDWLKIIQKQKVRLK*
Ga0111051_118446	Ga0111051_1184462	F046433	MIELPTSPDALSELSPVAPPKLLLQAQDANRDNLMVYVKADDYLRTETSDPSFMKSRCETTEYKALNEFLYFMKMVEPYVPDHIKDDARELRSELVFLGMSELHFAATALAKRLRHHLEVDNKPVYIDVGNSLSQCRVKDEMKSSQYILSLVLSKFLDDEFEEYEGRLKVYGGRGEIDKSSKILFLDDWIINGSQVEERIAGFEVDNDPEDHEASVLVMAASSNYIDNGIGVDSLWGEATYPVEAYYRLKNDHNDWGVSRVTGIHSSTDSAFGYEVDDIAYRAIEGGILKGERIDRLTLPALVNIVRPYRNGEDFDGLSRFRQLLEKG*
Ga0111051_118614	Ga0111051_1186142	F089055	LKVEKMNSTPECVAKTPEIEAREKLAAIFSDAEQRDNSKVNPELGKTAIDIENTSRINSADNEAVDLCNQTLGSYGKSLDYIRNNPLKTVQTIGISLQRLREGETEERCK*
Ga0111051_119435	Ga0111051_1194351	F085820	MKSSFLTLFAMLFLATTFSSGETDEPAPRATWGEIVNPIKAFMYPRDLEVSEDQYDSRRWHILVVPDSTKSSFAPTSKSTPAEVARYKELSRLVGNPTEPVVNECNFRRTWLTQGVKAIRVVRTQADGRDEEVTAQCGNLYFYTYKQIFDCHFKCGDRSIFAKPLGEVVEADYLWLPGIDEFGLVTPPNPDHLKQRIVLRLADGTEIEKELSAKGKK*