3300008493: Human tongue dorsum microbial communities from NIH, USA - visit 2, subject 763901136 replicate 2 reassembly

Overview

Basic Information

• IMG/M Taxon OID: 3300008493
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0063646 | Gp0052910 | Ga0111009
• Sample Name: Human tongue dorsum microbial communities from NIH, USA - visit 2, subject 763901136 replicate 2 reassembly
• Sequencing Status: Permanent Draft
• Sequencing Center: Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 176086658
• Sequencing Scaffolds: 19
• Novel Protein Genes: 19
• Associated Families: 19

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Prevotellaceae	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → unclassified Porphyromonas → Porphyromonas sp. oral taxon 279	4
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae	3
All Organisms → cellular organisms → Bacteria	2
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	1
All Organisms → Viruses → Predicted Viral	2
Not Available	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → unclassified Eubacteriales → Clostridiales bacterium	1
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Myoviridae sp. ctYA416	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Oral Cavity → Tongue Dorsum → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal surface

Location Information

• Location: USA: Maryland: Natonal Institute of Health
• Coordinates
  • Lat. (^o): 39.0042816
  • Long. (^o): -77.1012173
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F032313	Metagenome	180	N
F040149	Metagenome	162	N
F041827	Metagenome	159	Y
F045567	Metagenome	152	N
F046431	Metagenome	151	Y
F047508	Metagenome	149	N
F063777	Metagenome	129	N
F068942	Metagenome	124	N
F078842	Metagenome	116	N
F080165	Metagenome	115	N
F080166	Metagenome	115	N
F081454	Metagenome	114	N
F084342	Metagenome	112	N
F089055	Metagenome	109	Y
F092230	Metagenome	107	N
F094006	Metagenome	106	Y
F097527	Metagenome	104	N
F099453	Metagenome	103	N
F105379	Metagenome	100	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0111009_1000837	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	19457
Ga0111009_1001109	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Prevotellaceae	15585
Ga0111009_1001281	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → unclassified Porphyromonas → Porphyromonas sp. oral taxon 279	14195
Ga0111009_1001577	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae	12273
Ga0111009_1001580	All Organisms → cellular organisms → Bacteria	12263
Ga0111009_1001636	All Organisms → cellular organisms → Bacteria	11993
Ga0111009_1002215	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	9700
Ga0111009_1002554	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → unclassified Porphyromonas → Porphyromonas sp. oral taxon 279	8746
Ga0111009_1003540	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae	6859
Ga0111009_1005282	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae	5111
Ga0111009_1007337	All Organisms → Viruses → Predicted Viral	3926
Ga0111009_1013014	Not Available	2411
Ga0111009_1013194	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → unclassified Porphyromonas → Porphyromonas sp. oral taxon 279	2379
Ga0111009_1014043	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → unclassified Eubacteriales → Clostridiales bacterium	2249
Ga0111009_1016293	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Myoviridae sp. ctYA416	1950
Ga0111009_1017039	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → unclassified Porphyromonas → Porphyromonas sp. oral taxon 279	1871
Ga0111009_1025293	All Organisms → cellular organisms → Bacteria → Terrabacteria group	1268
Ga0111009_1026037	All Organisms → Viruses → Predicted Viral	1232
Ga0111009_1036539	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium	873

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0111009_1000837	Ga0111009_10008374	F092230	MVDKLKTHLLKVILPLFIVCIILVAFFRQIGCGSEGEYAFQISEWGAKLKNIYGTDFINKEIIVRDNAVRVDDIRCLYAVNQNEDGLSIYLLLPGGDYLTHNYVGSSFVRFSNSSEYNNMAYGEGSVEVSDSTSTGEVQNTEEKEARDKVDEAINSMRHLFASAIMVNLRVVELYKILTVCMILIVIAMTVGYYSYLKPETVYEFYCKLRRKEKYPSDVNLVKRIGFLIIILPPCMLFLLIV*
Ga0111009_1001109	Ga0111009_10011099	F032313	MYRFLILIFAITLMACDNNTPQGKPHEQEKHEVPVPKPKPQFDEVGERIWYGRTPAMRLDSTDYGAGLTSVFGMRTSSIPKQRFDSLFKQTVWEIKDIRVVETDLSLAKKNPGIMGWITTTEFTCRNGVIVLHRQGVDVNHVDTVNYVYDEVGNEIVLEGTGIRWFVLRLNKNAVEFLQRGRTMWGPFDWYYGRNSGRSEVTLEAK*
Ga0111009_1001281	Ga0111009_10012819	F094006	MRGALEPAGPTGALYESAVCVEAHIGELQTGGIACRGLFAFGRRDLLAVAELGAEAPHAIDMYDIALCKPLSELFAEELEYAFNFGA*
Ga0111009_1001577	Ga0111009_10015778	F063777	NNSFWMKLLLYLCIPFLLIFGILLLIGWGIYSGISSIISAVKEDFFGIKDKTNIKTSKNILFENEQFKLKKEDYLPDENSQEYKIFNDFCAKSNEYLDDGYIFYKLTDEKSATDLNGAIISEFQEDIGNYILLQNLILEDNQLKNQLISFDKKTGKITVLADIKDFFWLDFDSETKTINGYNNKEQIEITISE*
Ga0111009_1001580	Ga0111009_100158018	F089055	LGEALELEATREELAAILSDAEQRDNSKVNPELGKTAFDVANIPNNEAVDFCNQALGGYEKRLDYIKNNPLKTVQTIGISLQRLREYKTEGSCR*
Ga0111009_1001636	Ga0111009_100163610	F078842	MIVSSIYKTADNDGLIAHIYEHLLAQYVLKRLQDNEFFILSDIILSAKTYGDTCFIDAELYSPEAKKTYDEALREFDKLVIPEDDILRAAGECGIEMNRNIVEVDRSELSKKLREVQISLWRKQIDMAYRKAHDESSVNTLFRTSYIKYSKESDDLFRECVLEYSIDESHIQTPVDQALAAIVMQIVALNFLTVVREKYTVYDRGDQWSEASISVGYRMFLGLLKKDDKIINQLSCDFLEYIKILSSSVFCDNLQKALVRCSDNHKQVILNRSVLNAILGGCIIGGKGWLEMADSARIRQMINSIELDIYEVNS*
Ga0111009_1002215	Ga0111009_10022157	F068942	MIRKILSLPTLALCFTLCTALFAGCGEKNDGFVTEVRWSNVKNPEYGEYINIRLKAEGETFTTVGDHSWISFSNDASTLDTFTRHRFPEMDKDTAYYKDIVIYMTRNERERTTTLKLVAPPNRTQQPKQFKFSVSVTPPAMYMFKVHQPALPAKAQ*
Ga0111009_1002554	Ga0111009_10025542	F045567	MVTEDVVHTSTHRVEDALLPVDGDILTPRDGTHIVQTERVVVVLVSQEDSIDTIDTETCGLVVEVWTTVDEDTLPTLGDDEGRGAQTTVTSIRAMAHRAATAYLGDTSAGARTEKNYLHVSRRESYHGKEIPSLSSERGCAVERVVR*
Ga0111009_1003540	Ga0111009_10035404	F041827	MKHFLSALALGCLLLSCNRDLENNETPAPQNEKLVLLDKLREGSTVTFQYKNRNEIESVNIDGVGKSDIDYEYDTYGRIVKERRFHRRYDYGETNITYQYDGQGRLASSHAISTEFYPGTGLTPRCSVEKKHTYTYQGNKVIVKIEMGADTCSAIPETGKEKTITLLVENGRVTKTFDEQGNIVQTIEYYNTKNALRNIKGFPALVVEFYIRPLTYELPYYNHGIERIEDLRYIDNIKTRDFHDGDYWEYRYRYDKENTYNGDYPNGVGIHARSHNDPTYDEYLYQISADRSYIKEE*
Ga0111009_1005282	Ga0111009_10052822	F081454	MKAFKFILLLFITSASLVFGQEKRYFFKHEFQPNSKYLIKYKTDMDGGYKFVGSKEVIDKIGMDGVKMTINSDIESAISTQKKQGNNVPFILEYTKYFYKAEINGETVNRKIPLQGVKLIGDIVNGKKMEVKNVEGNIDENTKKILIESIKRFSAIDTDFPKEGLKIGDSFDVVVPYKQSTQMGDIEMKMNIKYTLLKVEKEEAYFDMLIDFVMGDKNVKNMDLSASGDGKGFLLFDMKNNYFTSQNIDMTINLKLKTELLTLENTSKAKSVITQQKIK*
Ga0111009_1007337	Ga0111009_10073372	F105379	MVIHFPLSQSDIESLLSISKLLKCDKILYDRSYVNPIIGVGPEKSYFQTTSYMVDLSPHINNLLVNISDLKNLGKITQLEPSKENPEIAIHKPVVSVFNWDAEYVKACMNSLREYQIDDNIIARTDEFHNTDYYNELMAGSASSGAFRINVGGYMIDIPKSAIPTLKSDHVVATVYNAPNKDFNVLRFKITKRNGIIVNQSMLFLPY*
Ga0111009_1013014	Ga0111009_10130142	F084342	LGGYLAVPIRRPFFAKALKETLGQERGLGDTYDKDYQNEKALQWVHRRHILGICKEE*
Ga0111009_1013194	Ga0111009_10131943	F040149	VADEEAEELRGEVLIEEQGIPVLFVEVVAWYDGRVSSSEILRSVGIALEREPRLAPVWSHNSEDAIDYFVYDISVPEGHTLTAVRERETVVAQLLNIHRYVYYP*
Ga0111009_1014043	Ga0111009_10140431	F046431	NRGKRKKMYKFKKILVTITLVIIMLTYTQTLVFAAESELTLTPKPETNNIHLKWTGPQNSSYKVYQKKPGASTFETIGLTDFSNNATDEEVKVLNVYPNSKNESQSAYPGSHSFQTLPMVNVTYLNGQTETIEKSALLKVWMEGRNSK*
Ga0111009_1016293	Ga0111009_10162932	F099453	MLRRKDMNRFDIIELAQETLIFVYNTFNGKVNTLDPYTRLNFVAGYLDTKTNIARTTPYGCIYISLEAFADTVEAHKFIDTDQIRNLALEIIIHELTHVDQLIDYKYIKFNNGYRDEIELQCVKQSCQWILDNIQYIRSFGLVVIPEVYQTRLANLTNVVYTPKYPMAIAMGKLEYMLGKKFREFSNNNIEIEYVDRLKTHYTFMVCENRIYINSANLNDLGERLLNDKQYTVEYLEYGNSKLVIKITQGA*
Ga0111009_1017039	Ga0111009_10170393	F047508	MLGHRLVEGRVKYPYLRDLGEHLRHGFDTEDISWVVKRSELCALMEHIYYLWGDTYALSKALCTVYEAVTDGVDLIEGLYEVLFFENVEDNLYAACVVRNVKVALNLLAFGVAEGDEGVVDPYALFVPRGQDLVVGELDEGELQGGAATVEDQDFHKVLYYMVRCELILSSP*
Ga0111009_1025293	Ga0111009_10252931	F097527	MIYFKMEKIGNSTLNKEKKTRSENLVFNTIPAAGVEPARPCGH
Ga0111009_1026037	Ga0111009_10260371	F080166	NIIKRINTEIKENFHTEYVVGANKLTTNLRYRYRMRLSPRGETVGVIIDWDNYDDLCTIIDEAIDICDPNNKTSPFKRMYSTAGDLLDIKCDSLKVRYLHLDDRFGNRLDLMPFVLIDDHNGTLTEAMKFRFNNDLIFDVPVSRLKGFRRFLMTYNPLLHAGSMARYMAITPLLGNNRQNMMR*
Ga0111009_1036539	Ga0111009_10365391	F080165	KYKIMKNIKILLLLLSLTACNNKTKTISTLDLEKTIIDYKDLPSKVKERVFYGEAMKLGEEDEERFQDFQETNNPKKYEYYTKQDPQLAWVHYPYIRNKKTKQEYSIDEDGPMGSRYIIYGDSLYISNHYNIYEKDSLKYTFTKYILK*