3300008472: Human tongue dorsum microbial communities from NIH, USA - visit 2, subject 159551223 reassembly

Overview

Basic Information

• IMG/M Taxon OID: 3300008472
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0063646 | Gp0053283 | Ga0115373
• Sample Name: Human tongue dorsum microbial communities from NIH, USA - visit 2, subject 159551223 reassembly
• Sequencing Status: Permanent Draft
• Sequencing Center: Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 158364712
• Sequencing Scaffolds: 18
• Novel Protein Genes: 22
• Associated Families: 19

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Prevotellaceae → Alloprevotella → Alloprevotella sp. oral taxon 473	1
Not Available	3
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Prevotellaceae	2
All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria → Candidatus Saccharimonas → Candidatus Saccharimonas aalborgensis	1
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	2
All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Neisseriales → Neisseriaceae → Neisseria	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → unclassified Eubacteriales → Clostridiales bacterium	2
All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria	1
All Organisms → Viruses → Predicted Viral	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group	1
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Siphoviridae sp. ctHip2	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Oral Cavity → Tongue Dorsum → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal surface

Location Information

• Location: National Institutes of Health, USA
• Coordinates
  • Lat. (^o): N/A
  • Long. (^o): N/A
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F018385	Metagenome	235	Y
F027205	Metagenome	195	N
F032313	Metagenome	180	N
F033081	Metagenome	178	Y
F036281	Metagenome	170	N
F043991	Metagenome	155	N
F045567	Metagenome	152	N
F046431	Metagenome	151	Y
F051213	Metagenome	144	N
F073671	Metagenome	120	N
F077405	Metagenome	117	N
F080164	Metagenome	115	N
F085820	Metagenome	111	N
F089055	Metagenome	109	Y
F097527	Metagenome	104	N
F103431	Metagenome	101	N
F103432	Metagenome	101	N
F105378	Metagenome	100	N
F105380	Metagenome	100	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0115373_1000897	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Prevotellaceae → Alloprevotella → Alloprevotella sp. oral taxon 473	19467
Ga0115373_1001205	Not Available	16026
Ga0115373_1001841	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Prevotellaceae	11727
Ga0115373_1002596	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria → Candidatus Saccharimonas → Candidatus Saccharimonas aalborgensis	9242
Ga0115373_1003979	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Prevotellaceae	6668
Ga0115373_1004425	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	6152
Ga0115373_1007604	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Neisseriales → Neisseriaceae → Neisseria	3822
Ga0115373_1015485	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas	1879
Ga0115373_1016452	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae	1767
Ga0115373_1016777	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	1731
Ga0115373_1017835	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → unclassified Eubacteriales → Clostridiales bacterium	1625
Ga0115373_1020109	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria	1428
Ga0115373_1024626	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → unclassified Eubacteriales → Clostridiales bacterium	1153
Ga0115373_1027788	All Organisms → Viruses → Predicted Viral	1017
Ga0115373_1033523	Not Available	831
Ga0115373_1034290	All Organisms → cellular organisms → Bacteria → Terrabacteria group	812
Ga0115373_1035271	Not Available	789
Ga0115373_1037725	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Siphoviridae sp. ctHip2	734

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0115373_1000897	Ga0115373_10008972	F085820	MYPRDLKVFAAGEEGRRWLILVVPDSTKSSFAPTSKSTPAEVARYKELSQLVGNPTEPVVNECHFHRTWLTQGVKAIRVVRTQADGRDEDVTAQCGNLYFYTDKQIFDCQFKCGDRSIFAKPLGETVEADYLWLPGRDVFGLVAPLNPDHLKQRIVLRLADGTEIEKELSEKGKK*
Ga0115373_1001205	Ga0115373_100120510	F105378	MNVKVYVDKIKKWVQISSDEVLDVNKNLSDLKDKEAAITNLGLYEKFISKEALESGFLPDVFTPDNIVTDSTHQFVTDEEKNKWNNKLNAPITMQDHLENNQIGYDSANSKFYIGLNNQNVLLGGSSCFDNIIVVNGFFSGNSQPTVIRNNKFNEAGQLITPLFVDVQCVEYTAGDLGEVSVSYTADSISIYNTGSFTGSFQCLIVYPLGSVNE*
Ga0115373_1001841	Ga0115373_10018411	F032313	MYRFLILIFALTLMACDNNTPQEKPHEQEKHEVPVPKPKPQFDEVGERIWYGRTPAMRLDSTDYGAGLTWVLEMRTSSIPKQRFDSLFKQTVWEIKDICAVETDLSLAKKIPRFVGGSIAKEFTCRNGVILRHMQGIDINCVDTVNYVYNEDLNEIVLEGTGIRWYVLRLNKNAVEFLQQGHNIWGPFDWYYGRNSGRSEVTLEAK*
Ga0115373_1001841	Ga0115373_10018412	F032313	MACDNNTPQEKPHEQEKHEVPXXXXKPQFDEVGERIWYGRTPAMRLDSTDYGAGLISVFGMLTSKIPKQRFDSLFKQTVWEVKDIRVVETDLSLAKKNPGILGWVTTTEFTCRNGVILLHWQGIDVNQVDTVNYVYDEVDNEIVLEGTGIRWSVLRLNKNAVEFLQRGRTMWGPFDWYYGRNSGRSEVTLEAK*
Ga0115373_1002596	Ga0115373_100259610	F089055	HKRTFWHLKVEKMNSTPECVTKTPEIKAREKEAREKLAVIFSDAEQRDNSKVNPELGKTAFDVANIPNNAAVDLCNKALGSYGKSLDRIKNSPLEAVWAIGTSLQHLRDEYKTEESCG*
Ga0115373_1003979	Ga0115373_10039791	F103432	MKKLIHSLFSLSLLLALSGLFCTTACQDDAEPTQRAGLISTDSLIHAAEVYDGKAFEHVVSTTATGLRVSEPRRVVPMLPRQLHVTMDSTTMFRRHTLPSVSAYSFQVVAVGDTIYRQKESDAQFNADLDALFQQSIGIAPRLFGVRELSVLGIDSRGKTRDLGNYSCPLLQGKRRNANFRTTEGVFHEHYEAASVDTFSVKSNWLLKTKAEPSLYAPSFRLLVWEQPAEGCTKLRFTLTLVDG
Ga0115373_1004425	Ga0115373_100442512	F018385	MADLINSWLPYQELSIEKDRDPVTDDEIIYGSNVKHFTLTVYSPEGRVSKYWNARILKDQVGYCRVACPREKKILCFNWVNWTAYMFTHDGMNELVFMPDARRRTVSQLSFDN*
Ga0115373_1004425	Ga0115373_10044255	F036281	MITLIKVDEGPVDIYELRMQYLAKLKQTDGVMLPTFIYRNKDLFVTEFKPTCDDQWIMYMTNAEGLITKMRIKNGDLMSNGSVLFLAEERKTYNAKEYYDYWTAREGKPAPFFYELRQYHVKSFMRVPGSTDLWITAEREHGRWYTFRMSDDQKSKFTRHTMTNEKGHQTYDWVLENVEWAADTIRYF*
Ga0115373_1004425	Ga0115373_10044256	F027205	VASRLIVSADDILKAVKESEEFERKALNEARKRDRAEGKEPRETLYPNPDLKPGREIVLDYIKNPERRRTPRCSVHLEKRTANNSYRFIVDVSQVRNRELADEIEKDLFAFMDYLLDEYDIPRRIKRSTK*
Ga0115373_1004425	Ga0115373_10044259	F043991	MSKKNPSVIDYFDLNGDLNEEAYEFEDVKLDEYIDKRSNVKPSWVGKYSHQMHFDLPDDTEVSFYKGLGIVYADINFPNGIRTILFKCRQKKNLTRFISRVLELAQGDSSNIHPDFRA*
Ga0115373_1007604	Ga0115373_10076042	F103431	MIDLDALVVGMLFFTQLFLQGIAWRIAIAHFLHTERGNAAAAAFDGAFGENIADCHAEDDKDKDTESKEEGFHVCIPEG*
Ga0115373_1015485	Ga0115373_10154851	F051213	MKASKLLWAVIVAFTFVFTSCDRVGDEPTIEGKLDKFFDSQAQRKSFRILTGSGKPYNHKVDWHIIGITDPYSDTYLTKKVDTLSNGDLKISYDWVSFTVRENKSVIDVEVQKNETGKVRAVYLNTSTSGRQITLPDMRVTQRAE*
Ga0115373_1016452	Ga0115373_10164521	F045567	GLDSLNMGDVAPLADTIAYDWERAMRQRDGRDTLTEELKGGITPLLYRAEGEARRPWVGMVTEDVVHTSTHRVEDALLPVDGDILTPRDGTHIVQTERVVVVLVSQEDSIDTIDTETCGLVVEVRATVNEDTLPTLGDDEGRGAQTTVTSIRAMAHRAATAYLGDTSAGARTEKNYLHVSRRESYHGKEIPSLSSERGCVVERVVR*
Ga0115373_1016777	Ga0115373_10167772	F018385	MMAEYENQWGPYKEHSIEKDRDPVLDDPIIYGVNVKHFTVTVYSQDGRVNKYWNARILKDDLGYCRIACPRDGKILCFNWVHWTAYMFTHDGLNELVFMPGSSRKTISRLYHEEVK*
Ga0115373_1017835	Ga0115373_10178354	F046431	VIISRAAESELTLTPKPETNNIHLKWTGPQNSSYKVYQKKPGSNNFETIGLTDFSNNATDEEVKVLNIYPQESNADGRLWPTLNPSDVANIAKVIPKVQVTYLDGQTETIQKSALLKVWMEGRNSKRR*
Ga0115373_1020109	Ga0115373_10201092	F033081	MYPPYLIMVHRPQKGVMAWLFKKGMPQDPKPVFVWPRLVTEIENAGYFSRRKFSILAVGLIIMTIATIKMLLLVPGLNQSVVSLLTRGLETFLPTRWATVTAWTVGMAGVFLMGDLTNYTPSQMFLHKIKATRFEVYNIILFLALLEEQAFRSGSERWNWRERVRASVCFGLLHIANIWYSFAAGIALSVTGFGFLLVYLWRYRKYRSQIIATAAATTVHALYNAIALSLIAVVLAIDIAKLL*
Ga0115373_1024626	Ga0115373_10246261	F046431	KMTIVSILLIIMLTYTQTLVFAAESELTLTPKPETNNIHLKWTGPQNSSYKVFQKKPGATQFETIGLTDFSNTDEEVRVLNVYPVSIAEYNTPYVNVTYLDGTSEDIPKSALLKVWMEGRNSK*
Ga0115373_1027788	Ga0115373_10277882	F073671	MNKEAEHELAELHEKERSLEKALELVREKIRELINYTNKNKAAR*
Ga0115373_1033523	Ga0115373_10335231	F077405	RLLVAKQRGVFYGFILLCQIKFVKNFFDWLKIIQKQKVRLK*
Ga0115373_1034290	Ga0115373_10342902	F097527	MIYFKMEKIGNSTYNKEKKTRSENLVFITIPAAGV
Ga0115373_1035271	Ga0115373_10352711	F080164	GLTLCAAPQVTLRERANAFPLITEKDESEIDAPYAWRLPVVPLSLDNREIRNFAKYPLLPSLSGGKLTVRVLVVGDTVAVHQDLMDDFAKRCRTTLGFGVRTAPKLFGIKGMHVYGVQKDGSRQAVDKQVTLHLPGFEKAEKPLLYKGQEGRLVLCEYYESHRGDLLLNAANAHPEIFGELCPVVDFHFPVELRRAYAWLLLEMELEDGTKLSTSLQHYDEQTSILDHPDRS*
Ga0115373_1037725	Ga0115373_10377251	F105380	VKQGRIFKKFDSNLLDSYMDGRQNNYNINLAELDDQISDGIVYADRNGKMIYKFGAKKIIQTAITNGLEISGLSKDLEMKHYSFWVPDLYFVSFYSFNPNEDLYIAYRSKDEEFICLTNIWPDGSSREESYFPNGKRLKLKRLCKGSMMSDVSSSDYDAWRNNAVTRASQFVNKFVSARGNSDLDFVGSALRNKVPSHNIKKCAVFLGTITKEQENVNTYEEFMEWTKNTKWFK*