3300008415: Human buccal mucosa microbial communities from NIH, USA - visit 1, subject 765013792 reassembly

Overview

Basic Information

• IMG/M Taxon OID: 3300008415
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0063646 | Gp0053255 | Ga0115225
• Sample Name: Human buccal mucosa microbial communities from NIH, USA - visit 1, subject 765013792 reassembly
• Sequencing Status: Permanent Draft
• Sequencing Center: Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 63663195
• Sequencing Scaffolds: 13
• Novel Protein Genes: 20
• Associated Families: 19

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → unclassified Porphyromonas → Porphyromonas sp. oral taxon 279	4
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	4
Not Available	3
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Neisseriales → Neisseriaceae → Neisseria → Neisseria subflava	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Oral Cavity → Buccal Mucosa → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal surface

Location Information

• Location: National Institutes of Health, USA
• Coordinates
  • Lat. (^o): N/A
  • Long. (^o): N/A
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F018385	Metagenome	235	Y
F027205	Metagenome	195	N
F036281	Metagenome	170	N
F043991	Metagenome	155	N
F049707	Metagenome	146	N
F051214	Metagenome	144	N
F053092	Metagenome	141	N
F055792	Metagenome	138	N
F067847	Metagenome	125	N
F071328	Metagenome	122	N
F074985	Metagenome	119	N
F077404	Metagenome	117	N
F090517	Metagenome	108	N
F095632	Metagenome	105	N
F098763	Metagenome	103	N
F101360	Metagenome	102	N
F103431	Metagenome	101	N
F103434	Metagenome	101	N
F105376	Metagenome	100	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0115225_100022	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → unclassified Porphyromonas → Porphyromonas sp. oral taxon 279	97348
Ga0115225_100089	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	44539
Ga0115225_100092	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	44008
Ga0115225_100098	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → unclassified Porphyromonas → Porphyromonas sp. oral taxon 279	42868
Ga0115225_100241	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → unclassified Porphyromonas → Porphyromonas sp. oral taxon 279	23692
Ga0115225_100243	Not Available	23655
Ga0115225_101497	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	6251
Ga0115225_101727	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Neisseriales → Neisseriaceae → Neisseria → Neisseria subflava	5538
Ga0115225_103191	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	3214
Ga0115225_104665	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	2273
Ga0115225_105077	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → unclassified Porphyromonas → Porphyromonas sp. oral taxon 279	2103
Ga0115225_111413	Not Available	984
Ga0115225_115031	Not Available	756

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0115225_100022	Ga0115225_10002241	F055792	MEIASQALDSTSAVTHRILLLTTQLGESLLASFGAEDGVIAEAMVTRALKRDLAIDSTLEEVRTVFVDESDDGAEASTTWSRYPLETLQKEGYILFEGRMLTCEARGVDSRSSVKSLDLEPRIIGEAIEPVALPHVARLDESIALQGIGGLRDLLVTPDVSETDHLQTSREEGTDLLQLMSIIARKYQLFHTFVS*
Ga0115225_100089	Ga0115225_10008933	F067847	MFSHIIRVRGIFDDEPTTKKLYFHMSRREMFDFIKRYDNVANFEKWLQAAIDNEDLYTMMKFFDDLIGTSYGERQGERFVKSEQIKESFLNSPEYEELFDQLMDNPSLVREFYNGILPEKIMKQVQQDPKYKELDDKLKETELKNL*
Ga0115225_100089	Ga0115225_10008940	F018385	MMAEYENQWGPYKEHSIEKDRNPALDDPIIYGVNVKHFTVTVYSQDGRVNKYWNVRILKDDLGYCRIACPRDGKILCFNWVHWTAYMFTHDGLNELVFMPGSNRKTISRLYHEEVK*
Ga0115225_100089	Ga0115225_10008943	F051214	MPGKIVAHDTHLRIDTEFIELNDCFEAFRRGVEYREKNDVDDILVICNAPDIIEYQLKNGDSFIVTYDPIHRIIVMRVFLHDEDITIKPIYIYNNREYQIACEFLRQVMHDKIDLKDEWIA*
Ga0115225_100089	Ga0115225_10008944	F043991	MSKKNPSVVDYFDLNGDLNEEAYEFEDVKLEEYIDKRSNVKPSWVGKYSHQMHFDLPDDTEVSFYKGLNIVYADINFAGGIRTILFKCRQKKNLTRFISRVLEIAQGDPSNVHPDFRA*
Ga0115225_100089	Ga0115225_10008947	F027205	VASRLIVSADDILKAVKESEEFERKALGEARKRDRAEGKEPRETLYPNPDLKPGREIVLDYIKNPERRRTPRCSVHLEKRTANNSYRFIVDVSQVRNRELADEIEKDLFAFMDYLLDEYDIPRRIKRSTK*
Ga0115225_100089	Ga0115225_10008948	F036281	MITLIKVDEGPVDIYELRMQYLAKLKETDGVMLPTFIYRNKDLFVTEFKPTCDDRWIMYMTNAEGLITKMRIKNGDLMSNGSVLFLAEERKTYSAKEYYDYWAAREGKPAPFFYESRQYHVKSFMRVPGSTDLWITAERETGHWYTFRMSDDQKSKFTRHTMTNEKGHQSYDWVLENVEWAADTIRYF*
Ga0115225_100089	Ga0115225_10008949	F074985	MELTDGGWYKTPRIIKGTDFLAHIHDTYASGNAMYAEFKASEGEVRILEYQRLYEVDTESAVLFTINTYPQESILLKNIEEYEFIQYRPQQAWKAIHMGSTKRFNLEQFDQLWLDQTFKKLHPVIVNHDGKFWHVMGLKLDVDADGSFWGLYLKRQDSDFMKEIRMPLTQKFIYNPISGSWSLDDPTQEIKDLEEIKQTLRADAILDVTVSGVPMKLIRVQEIAKGVLFFVFQDEEKNKRYYYNRPAIKLRIVTDSETGEQKYLLDHIKAMHID*
Ga0115225_100092	Ga0115225_1000922	F101360	VSKKSAARRAAIAAHIAKVASQEKKKALKELEEYMEPGDTTKPQVDGLQVGTVSVSAPQPRYQVVDEKALVAWLEWNKPDAVHKVPAPWFVAAAALDGFIKQTGEVPDGVEVVQGDPRISVRISTAQEEAIRELISTGDISILEIEGGDA*
Ga0115225_100092	Ga0115225_10009231	F103434	VVEVTLAVVKEGRTGRRFERGETFTIDKVLVQPSAGNALKATENRVIRGDLTDETTLKVFGTGRKWPGGPHSWVKIIKGPESLVGKTFQQAGEPLTYDASPMTRHWSVRCDTLGTEAR*
Ga0115225_100098	Ga0115225_10009826	F053092	MQSDQGLILCLTHALLVLGALILEPAEMEDTVDDHTVQLFGVLVAKELGIATHRIKADEHVPRDHIPLTLVEGDDISIVVMIEKVLIGLQDALITTELVAELADTTVIARSDLTDPVAKDTLSEARLLDIFVCIVSYKLRFFRHK*
Ga0115225_100241	Ga0115225_1002414	F090517	MNRRILSFCGLLLGLLFLASSCKKDTPLPPQLSEGELRQTVWNGTLEHKNAKRDSYSVYLNFLSDSEVEVSGYDLKDPTYPRDVQVRYYYTITDRILTLKAQVNRELHPPMDQNTWYLIRKEPSLLVFQANAGNPDREATLTLRRKL*
Ga0115225_100243	Ga0115225_10024315	F105376	MDNTDKEVSAKEFGALGADVIHIKESVDRHTVTLERIENIARANVTQAQLKAYIAEHEKESEEKYVKRTEIEGVMNFWSLVTSNLAKLFAIALVGLAIYATNNLIQQNKAVTELQEEVQQTQVRRK*
Ga0115225_101497	Ga0115225_1014977	F103434	MVGHRPRRGRFLENGPHAVEVTVAVVKEGRTGRRYERGETFYVDKVLVQPSAGNALKATENRVIRGDLTDETTLKVLGTGRKWPGGPHSWVKIIKGPASLEGKTFQQAGEPLTYDASPMTRHWAVRCDTLGTDAK*
Ga0115225_101727	Ga0115225_1017277	F103431	MNKYSTTTLMIDLDALIVGMLFFIQLFLQGIAWRIAIAHFLHTERGNAAAAAFNGAFGENIADCHAEDDKDKDTESKEEGFHVCIPEG*
Ga0115225_103191	Ga0115225_1031913	F049707	VVSEYKSPHNDGHDPYILIWEYGNDIRRAEFTERWATFDETGWTVWYFRLVDGGIMTFSSREWEQKDDVNHLTTIWMKPSLYDIERKVS*
Ga0115225_104665	Ga0115225_1046652	F095632	MTMSFKETTGYKVVSLVASTSASITAGAVVGALCPPAGVVLTAIYGLGSSVLGTYVGDKAGRQYAETLAETIDSMKTPQTN*
Ga0115225_105077	Ga0115225_1050773	F098763	MDRRASLRILSPALHLTMKLFEAVVRTTISYDPSDEVESKRGMNAIPTAVDE*
Ga0115225_111413	Ga0115225_1114131	F077404	LHRNAIYIPPALEQYADTTLLHQRFNVENKGNYLYTPFTEDNEPTIPFNYGFLHPLGERFYNCFMGKVDRILRPKADKGFIILTSYLVVLGDSYAFDTSNKDTSKLADLKYLDFRHIKRDFSYGHPYQGFTPNDRIELSNFVQSYGRQAALETANAWVMASYPFSLQSTKFENRYTRGRKLILTDGHSTLYLYFLMIDSVAPNFDTEVLPYIKGVFRFNRFW*
Ga0115225_115031	Ga0115225_1150311	F071328	MKWEFILEGEYIVEFVKLCKHLVLERTIDPNKHQAAAIYLRYSSQLLLKKRRAIRRLGIEKKYVSAILRQYGIHYIEYGDNEHRVFFLDRGINLYFSKHDQSSIYIIQRIEFSNEEYRSFILKVLPVKKSEW*